Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99938 * 2 1 4 4 H 1.08996 * 109.47216 * 34.64531 * 3 2 1 5 5 C 1.53001 * 109.47157 * 154.64505 * 3 2 1 6 6 S 1.81403 * 109.46780 * 300.00285 * 5 3 2 7 7 C 1.81406 * 103.00030 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47476 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47042 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99672 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00391 * 180.02562 * 10 9 8 13 13 N 1.31524 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00285 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47035 * 90.00026 * 14 12 10 16 16 H 1.48501 * 109.46769 * 210.00101 * 14 12 10 17 17 H 1.48503 * 109.46983 * 329.99932 * 14 12 10 18 18 C 1.53006 * 109.47231 * 274.64336 * 3 2 1 19 19 C 1.52995 * 117.51515 * 105.94816 * 18 3 2 20 20 C 1.52996 * 60.00042 * 107.47865 * 19 18 3 21 21 H 1.08997 * 109.47357 * 184.98630 * 1 2 3 22 22 H 1.08995 * 109.47066 * 304.99356 * 1 2 3 23 23 H 1.09009 * 109.46702 * 64.98829 * 1 2 3 24 24 H 1.09005 * 109.46897 * 59.99969 * 5 3 2 25 25 H 1.08990 * 109.47557 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.46895 * 300.00411 * 7 6 5 27 27 H 1.08999 * 109.46805 * 59.99135 * 7 6 5 28 28 H 1.08994 * 109.46803 * 299.99925 * 8 7 6 29 29 H 1.09000 * 109.46909 * 59.99898 * 8 7 6 30 30 H 1.08995 * 109.47811 * 300.00194 * 9 8 7 31 31 H 1.09000 * 109.47143 * 60.00297 * 9 8 7 32 32 H 0.96996 * 120.00184 * 179.97438 * 13 12 10 33 33 H 1.08999 * 115.54807 * 320.25009 * 18 3 2 34 34 H 1.08997 * 117.49894 * 214.96954 * 19 18 3 35 35 H 1.09001 * 117.50396 * 359.97438 * 19 18 3 36 36 H 1.09003 * 117.50422 * 252.50844 * 20 19 18 37 37 H 1.09001 * 117.49707 * 107.48511 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3857 1.9813 0.5842 5 6 3.4085 1.2412 0.6177 6 16 3.2890 0.6324 2.3223 7 6 5.0167 0.6257 2.8753 8 6 5.0878 0.1288 4.3206 9 6 6.5450 0.1225 4.7867 10 6 6.6149 -0.3663 6.2105 11 1 5.7105 -0.6451 6.7307 12 6 7.8335 -0.4577 6.8490 13 7 8.9349 -0.1178 6.2156 14 14 7.9202 -1.0643 8.6136 15 1 8.0851 -2.5401 8.6222 16 1 9.0772 -0.4330 9.2977 17 1 6.6672 -0.7021 9.3237 18 6 2.1110 1.8190 -1.4378 19 6 1.1217 2.9021 -1.8725 20 6 2.5921 3.2569 -1.6423 21 1 -0.3634 -1.0237 0.0893 22 1 -0.3633 0.5893 0.8418 23 1 -0.3633 0.4345 -0.9314 24 1 4.0331 0.5654 0.0335 25 1 3.8517 2.2370 0.6182 26 1 5.6007 -0.0349 2.2344 27 1 5.4202 1.6366 2.8187 28 1 4.5039 0.7897 4.9611 29 1 4.6841 -0.8821 4.3775 30 1 7.1286 -0.5386 4.1461 31 1 6.9490 1.1333 4.7298 32 1 9.7921 -0.1817 6.6649 33 1 2.4059 1.0789 -2.1817 34 1 0.7659 2.8746 -2.9024 35 1 0.3985 3.2488 -1.1344 36 1 2.8365 3.8372 -0.7526 37 1 3.2036 3.4628 -2.5208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424163298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = -45.597115 kcal Electronic energy + Delta-G solvation = -14996.352603 eV Core-core repulsion = 12479.158174 eV Total energy + Delta-G solvation = -2517.194429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.10756 -36.43403 -34.40656 -31.98625 -31.33228 -27.47277 -26.53013 -24.46530 -23.24278 -22.63072 -20.72226 -20.09951 -17.28305 -16.47580 -16.15650 -15.57564 -15.16342 -14.76086 -14.56316 -14.46009 -13.94174 -13.27213 -13.19554 -12.55682 -12.31641 -11.97538 -11.85546 -11.72818 -11.45596 -11.39759 -10.86098 -10.83352 -10.69311 -10.53912 -10.35884 -9.80178 -9.75066 -9.60292 -9.24876 -9.06571 -8.34504 -7.30267 -5.99618 -4.01950 1.92944 2.97303 3.33716 3.38841 3.39567 3.43704 3.58054 4.43083 4.47403 4.53444 4.65321 4.84563 5.02747 5.14843 5.24222 5.27063 5.30679 5.36294 5.37031 5.54968 5.56862 5.57343 5.70407 5.74767 5.77099 5.84935 6.18802 6.60489 6.76762 7.04616 7.06244 7.66336 7.78980 7.99724 8.41858 9.04607 9.62129 11.11802 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.050216 B = 0.003488 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.454333 B = 8026.101664 C = 8421.318875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.084 4.084 6 S -0.266 6.266 7 C -0.075 4.075 8 C -0.094 4.094 9 C 0.027 3.973 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.175 4.175 19 C -0.178 4.178 20 C -0.172 4.172 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.163 5.446 -16.369 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.080 3.920 4 H 0.086 0.914 5 C -0.233 4.233 6 S -0.037 6.037 7 C -0.223 4.223 8 C -0.133 4.133 9 C -0.012 4.012 10 C -0.558 4.558 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.196 4.196 19 C -0.215 4.215 20 C -0.210 4.210 21 H 0.103 0.897 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.777 4.998 -15.784 22.870 hybrid contribution 1.118 0.275 0.156 1.162 sum -14.659 5.272 -15.628 22.066 Atomic orbital electron populations 1.22760 0.81200 1.02731 0.99727 1.88009 1.19485 1.26367 1.94707 1.21281 0.93083 0.85429 0.92182 0.91412 1.23380 0.99109 1.04208 0.96577 1.86917 1.16038 1.88168 1.12603 1.23622 0.92077 1.04135 1.02447 1.21453 1.01591 1.00294 0.89994 1.19105 0.88706 0.97354 0.96018 1.21233 0.92888 1.43698 0.97979 0.92540 1.25025 0.95785 0.95505 0.98164 1.69967 0.97966 1.48533 1.37130 0.86569 0.77617 0.78920 0.84772 1.20628 1.21227 1.19814 1.22892 1.05502 0.92664 0.98494 1.23025 0.92932 1.03087 1.02504 1.22935 0.97144 0.97205 1.03671 0.89663 0.94012 0.94242 0.89540 0.89127 0.90589 0.90757 0.92469 0.92360 0.96428 0.96462 0.92992 0.86918 0.88642 0.88779 0.88420 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.84 101.05 1.10 1.40 16 2 O -0.37 -4.67 9.96 -35.23 -0.35 -5.02 16 3 C 0.14 1.56 2.34 -26.73 -0.06 1.50 16 4 H 0.07 0.75 7.58 -51.93 -0.39 0.35 16 5 C -0.08 -1.07 5.56 37.16 0.21 -0.86 16 6 S -0.27 -4.34 21.38 -107.50 -2.30 -6.64 16 7 C -0.07 -1.35 5.94 37.16 0.22 -1.13 16 8 C -0.09 -2.03 5.16 -26.73 -0.14 -2.17 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.18 -1.59 5.30 -90.62 -0.48 -2.07 16 19 C -0.18 -1.32 10.18 -26.74 -0.27 -1.59 16 20 C -0.17 -1.34 9.82 -26.73 -0.26 -1.60 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.38 7.97 -51.93 -0.41 -0.03 16 23 H 0.04 0.31 8.12 -51.92 -0.42 -0.11 16 24 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 25 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 26 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 27 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.10 0.76 7.96 -51.93 -0.41 0.35 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -30.85 323.15 -8.96 -39.80 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.65 Total: -3.79 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.24 Total: -19.69 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.30 Total: -6.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.85 -8.96 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.793 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds