Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99938 * 2 1 4 4 H 1.08996 * 109.47216 * 34.64531 * 3 2 1 5 5 C 1.53001 * 109.47157 * 154.64505 * 3 2 1 6 6 S 1.81403 * 109.46780 * 300.00285 * 5 3 2 7 7 C 1.81406 * 103.00030 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47476 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47042 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99672 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00391 * 180.02562 * 10 9 8 13 13 N 1.31524 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00285 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47035 * 90.00026 * 14 12 10 16 16 H 1.48501 * 109.46769 * 210.00101 * 14 12 10 17 17 H 1.48503 * 109.46983 * 329.99932 * 14 12 10 18 18 C 1.53006 * 109.47231 * 274.64336 * 3 2 1 19 19 C 1.52995 * 117.51515 * 105.94816 * 18 3 2 20 20 C 1.52996 * 60.00042 * 107.47865 * 19 18 3 21 21 H 1.08997 * 109.47357 * 184.98630 * 1 2 3 22 22 H 1.08995 * 109.47066 * 304.99356 * 1 2 3 23 23 H 1.09009 * 109.46702 * 64.98829 * 1 2 3 24 24 H 1.09005 * 109.46897 * 59.99969 * 5 3 2 25 25 H 1.08990 * 109.47557 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.46895 * 300.00411 * 7 6 5 27 27 H 1.08999 * 109.46805 * 59.99135 * 7 6 5 28 28 H 1.08994 * 109.46803 * 299.99925 * 8 7 6 29 29 H 1.09000 * 109.46909 * 59.99898 * 8 7 6 30 30 H 1.08995 * 109.47811 * 300.00194 * 9 8 7 31 31 H 1.09000 * 109.47143 * 60.00297 * 9 8 7 32 32 H 0.96996 * 120.00184 * 179.97438 * 13 12 10 33 33 H 1.08999 * 115.54807 * 320.25009 * 18 3 2 34 34 H 1.08997 * 117.49894 * 214.96954 * 19 18 3 35 35 H 1.09001 * 117.50396 * 359.97438 * 19 18 3 36 36 H 1.09003 * 117.50422 * 252.50844 * 20 19 18 37 37 H 1.09001 * 117.49707 * 107.48511 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3857 1.9813 0.5842 5 6 3.4085 1.2412 0.6177 6 16 3.2890 0.6324 2.3223 7 6 5.0167 0.6257 2.8753 8 6 5.0878 0.1288 4.3206 9 6 6.5450 0.1225 4.7867 10 6 6.6149 -0.3663 6.2105 11 1 5.7105 -0.6451 6.7307 12 6 7.8335 -0.4577 6.8490 13 7 8.9349 -0.1178 6.2156 14 14 7.9202 -1.0643 8.6136 15 1 8.0851 -2.5401 8.6222 16 1 9.0772 -0.4330 9.2977 17 1 6.6672 -0.7021 9.3237 18 6 2.1110 1.8190 -1.4378 19 6 1.1217 2.9021 -1.8725 20 6 2.5921 3.2569 -1.6423 21 1 -0.3634 -1.0237 0.0893 22 1 -0.3633 0.5893 0.8418 23 1 -0.3633 0.4345 -0.9314 24 1 4.0331 0.5654 0.0335 25 1 3.8517 2.2370 0.6182 26 1 5.6007 -0.0349 2.2344 27 1 5.4202 1.6366 2.8187 28 1 4.5039 0.7897 4.9611 29 1 4.6841 -0.8821 4.3775 30 1 7.1286 -0.5386 4.1461 31 1 6.9490 1.1333 4.7298 32 1 9.7921 -0.1817 6.6649 33 1 2.4059 1.0789 -2.1817 34 1 0.7659 2.8746 -2.9024 35 1 0.3985 3.2488 -1.1344 36 1 2.8365 3.8372 -0.7526 37 1 3.2036 3.4628 -2.5208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424163298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = -62.082884 kcal Electronic energy + Delta-G solvation = -14997.067480 eV Core-core repulsion = 12479.158174 eV Total energy + Delta-G solvation = -2517.909306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.89135 -37.16216 -36.36435 -34.04736 -32.23788 -29.42691 -27.34590 -25.64943 -24.89342 -23.22032 -22.12853 -21.32716 -18.56865 -18.08838 -17.24112 -16.71583 -16.47707 -16.23847 -15.91667 -15.55096 -14.86397 -14.50846 -14.39025 -14.28749 -13.66936 -13.48575 -13.11407 -12.77115 -12.74156 -12.55733 -12.43871 -12.28702 -12.18921 -11.66109 -11.43623 -11.35653 -11.23177 -11.01376 -10.83820 -10.56786 -10.50648 -8.61029 -8.21563 -6.32780 0.67718 1.40318 1.41734 1.53117 1.68278 2.40983 2.69363 2.82660 3.11679 3.75453 3.83355 3.94415 4.02997 4.03324 4.10570 4.25011 4.31914 4.49020 4.50257 4.58723 4.61866 4.76279 4.80813 4.81443 4.89342 4.96561 4.99297 5.12651 5.17526 5.22890 5.48116 5.67353 5.81445 6.21855 6.24080 6.82685 7.36418 8.90314 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.050216 B = 0.003488 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.454333 B = 8026.101664 C = 8421.318875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.395 6.395 3 C 0.142 3.858 4 H 0.069 0.931 5 C -0.074 4.074 6 S -0.285 6.285 7 C -0.069 4.069 8 C -0.080 4.080 9 C 0.031 3.969 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.185 4.185 19 C -0.167 4.167 20 C -0.170 4.170 21 H 0.091 0.909 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.053 0.947 30 H -0.004 1.004 31 H -0.002 1.002 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 5.872 -16.764 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C 0.083 3.917 4 H 0.087 0.913 5 C -0.222 4.222 6 S -0.057 6.057 7 C -0.217 4.217 8 C -0.119 4.119 9 C -0.008 4.008 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.188 1.188 18 C -0.205 4.205 19 C -0.204 4.204 20 C -0.207 4.207 21 H 0.110 0.890 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.946 5.424 -16.180 24.049 hybrid contribution 1.435 0.164 0.192 1.457 sum -15.511 5.587 -15.988 22.965 Atomic orbital electron populations 1.22900 0.79747 1.03458 1.00648 1.87963 1.21199 1.27290 1.94954 1.21288 0.91870 0.85125 0.93444 0.91263 1.23520 1.00627 1.04712 0.93359 1.86926 1.13962 1.88793 1.16019 1.23351 0.93852 1.04287 1.00214 1.21162 0.98210 1.00200 0.92330 1.18981 0.91407 0.95374 0.95034 1.21666 0.93293 1.44091 0.99331 0.92324 1.25974 0.95307 0.95453 1.02990 1.70089 0.98620 1.49364 1.39167 0.85430 0.78029 0.78566 0.78939 1.19735 1.20510 1.18810 1.22731 1.07625 0.93261 0.96887 1.23115 0.92790 1.01206 1.03316 1.23027 0.97729 0.95861 1.04122 0.89005 0.93877 0.92612 0.89684 0.87514 0.90554 0.90083 0.92587 0.92851 0.98605 0.98396 0.92658 0.87258 0.87351 0.88328 0.88401 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.84 113.37 1.23 1.73 16 2 O -0.39 -9.59 9.96 -148.98 -1.48 -11.07 16 3 C 0.14 2.96 2.34 30.60 0.07 3.03 16 4 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 5 C -0.07 -1.78 5.56 71.98 0.40 -1.38 16 6 S -0.29 -9.13 21.38 -56.49 -1.21 -10.34 16 7 C -0.07 -2.48 5.94 71.98 0.43 -2.05 16 8 C -0.08 -3.50 5.16 30.59 0.16 -3.34 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 14 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 C -0.18 -2.99 5.30 -10.79 -0.06 -3.04 16 19 C -0.17 -2.04 10.18 30.59 0.31 -1.73 16 20 C -0.17 -2.24 9.82 30.59 0.30 -1.94 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 0.73 7.97 -2.39 -0.02 0.71 16 23 H 0.06 0.78 8.12 -2.38 -0.02 0.76 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.11 2.22 7.67 -2.40 -0.02 2.20 16 26 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.10 1.30 7.96 -2.39 -0.02 1.28 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.73 323.15 4.31 -61.43 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.00 Total: 8.00 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 3.68 Total: -38.03 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.89 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.48 Total: -11.07 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.21 Total: -10.34 kcal Total: -65.73 4.31 -61.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.657 kcal (2) G-P(sol) polarization free energy of solvation -65.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds