Wall clock time and date at job start Mon Mar 30 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47605 * 2 1 4 4 C 1.50707 * 109.46571 * 239.99856 * 2 1 3 5 5 H 1.08002 * 119.99669 * 240.00297 * 4 2 1 6 6 C 1.37875 * 119.99905 * 60.00362 * 4 2 1 7 7 N 1.31513 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99737 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46804 * 60.00479 * 8 6 4 10 10 H 1.48495 * 109.46858 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47189 * 300.00307 * 8 6 4 12 12 C 1.52998 * 109.46879 * 120.00300 * 2 1 3 13 13 S 1.81391 * 109.47123 * 299.99616 * 12 2 1 14 14 C 1.81408 * 103.00225 * 180.02562 * 13 12 2 15 15 C 1.53175 * 109.53974 * 65.44209 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85182 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 1.09007 * 109.47238 * 300.00447 * 1 2 3 21 21 H 1.09008 * 109.47262 * 59.99845 * 1 2 3 22 22 H 1.08998 * 109.47706 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47412 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47305 * 300.00047 * 3 2 1 25 25 H 1.08996 * 109.46816 * 59.99792 * 3 2 1 26 26 H 0.97001 * 119.99608 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47186 * 179.97438 * 12 2 1 28 28 H 1.09009 * 109.47317 * 59.99848 * 12 2 1 29 29 H 1.08997 * 109.61050 * 305.22577 * 14 13 12 30 30 H 1.09006 * 109.52647 * 296.75482 * 15 14 13 31 31 H 1.08998 * 109.52537 * 56.94374 * 15 14 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 33 33 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 34 34 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 35 35 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 36 36 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 37 37 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6530 -1.5887 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3222 -1.1197 -4.0080 9 1 1.8275 -2.5199 -4.0082 10 1 1.8276 -0.4193 -5.2204 11 1 3.8072 -1.1193 -4.0078 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1338 2.7303 14 6 2.1331 -0.8518 4.0840 15 6 3.6604 -0.7374 4.0666 16 6 4.2357 -1.5075 5.2582 17 8 3.6830 -0.9895 6.4700 18 6 2.2624 -1.1127 6.5628 19 6 1.6079 -0.3268 5.4237 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9562 0.8899 26 1 0.7095 1.1618 -3.4844 27 1 3.1299 -0.7217 1.2490 28 1 1.6765 -1.7490 1.2492 29 1 1.8443 -1.8959 3.9630 30 1 4.0469 -1.1598 3.1391 31 1 3.9480 0.3116 4.1378 32 1 5.3196 -1.3940 5.2753 33 1 3.9820 -2.5635 5.1653 34 1 1.9247 -0.7148 7.5198 35 1 1.9827 -2.1635 6.4870 36 1 1.8540 0.7305 5.5222 37 1 0.5264 -0.4556 5.4666 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572986709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:37 Heat of formation + Delta-G solvation = -70.747269 kcal Electronic energy + Delta-G solvation = -16138.621457 eV Core-core repulsion = 13620.336435 eV Total energy + Delta-G solvation = -2518.285022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.20189 -35.91890 -33.67634 -31.55194 -31.16041 -26.35285 -25.59064 -25.10822 -24.96357 -23.53177 -20.39329 -18.90001 -16.67096 -16.07358 -15.93164 -15.35022 -14.92030 -14.74577 -14.20440 -13.93408 -13.46395 -13.18275 -12.57580 -12.32693 -12.12747 -11.51455 -11.39454 -11.29672 -11.21336 -10.89507 -10.79466 -10.70747 -10.40587 -10.24079 -10.11701 -9.75357 -9.48739 -9.43533 -9.15092 -8.53958 -8.36306 -6.98744 -5.98203 -4.09922 2.24177 3.28889 3.29525 3.34202 3.37708 3.79325 4.40414 4.65571 4.72046 4.93313 5.13589 5.15174 5.27329 5.35315 5.42550 5.56543 5.61952 5.76282 5.94355 6.00489 6.08763 6.16094 6.25231 6.57186 6.86156 7.01062 7.08416 7.18758 7.19661 7.42657 7.66771 7.72253 8.09076 8.20275 8.42818 8.89100 9.55150 11.02466 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.044858 B = 0.005352 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.045795 B = 5229.975193 C = 5559.536316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.053 0.947 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.052 4.052 13 S -0.262 6.262 14 C -0.070 4.070 15 C -0.149 4.149 16 C 0.064 3.936 17 O -0.384 6.384 18 C 0.066 3.934 19 C -0.132 4.132 20 H 0.021 0.979 21 H 0.082 0.918 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.082 0.918 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -3.445 13.674 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.200 4.200 13 S -0.031 6.031 14 C -0.198 4.198 15 C -0.189 4.189 16 C -0.015 4.015 17 O -0.303 6.303 18 C -0.013 4.013 19 C -0.171 4.171 20 H 0.040 0.960 21 H 0.101 0.899 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.101 0.899 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.022 -2.324 13.717 14.059 hybrid contribution 0.931 -1.791 -1.303 2.402 sum 2.953 -4.115 12.414 13.408 Atomic orbital electron populations 1.21846 0.97424 0.99007 1.00640 1.17953 0.92964 0.92516 0.88519 1.21837 0.98202 0.98206 1.00645 1.20995 1.31707 1.12056 0.90004 0.92884 1.24880 0.94898 0.94931 0.98708 1.69820 1.36428 1.22577 1.23272 0.86660 0.79163 0.79758 0.82404 1.20354 1.21230 1.20345 1.23818 1.01663 1.00554 0.93930 1.86877 1.70443 1.44537 1.01250 1.23142 0.97521 1.01842 0.97325 1.22519 0.94437 1.02834 0.99080 1.22624 0.98423 0.96374 0.84066 1.87909 1.20748 1.82940 1.38699 1.22591 0.81048 0.99045 0.98591 1.21986 1.01044 1.01454 0.92609 0.96049 0.89893 0.95813 0.95791 0.89915 0.96019 0.92927 0.91724 0.91918 0.90319 0.90585 0.89889 0.88752 0.93338 0.88668 0.93244 0.90232 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.01 37.16 0.30 -2.91 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.13 -3.20 8.01 37.15 0.30 -2.90 16 4 C -0.51 -13.50 8.01 -34.44 -0.28 -13.78 16 5 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.25 9.35 55.43 0.52 -23.74 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C -0.05 -1.08 4.60 37.16 0.17 -0.91 16 13 S -0.26 -4.82 18.21 -107.50 -1.96 -6.78 16 14 C -0.07 -0.99 2.74 -26.55 -0.07 -1.07 16 15 C -0.15 -1.98 5.30 -26.59 -0.14 -2.12 16 16 C 0.06 0.72 6.84 37.21 0.25 0.97 16 17 O -0.38 -4.80 10.77 -35.23 -0.38 -5.18 16 18 C 0.07 0.69 6.84 37.20 0.25 0.95 16 19 C -0.13 -1.61 5.43 -26.59 -0.14 -1.76 16 20 H 0.02 0.48 6.92 -51.92 -0.36 0.12 16 21 H 0.08 2.21 6.07 -51.92 -0.32 1.89 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 25 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.32 7.26 -51.93 -0.38 0.94 16 28 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.04 7.10 -51.93 -0.37 0.67 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -27.55 296.58 -8.19 -35.74 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.29 Total: -0.44 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 0.47 Total: -19.88 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.52 Total: -23.74 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.38 Total: -5.18 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -4.82 SS G_CDS: -1.96 Total: -6.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.55 -8.19 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572986709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.008 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds