Wall clock time and date at job start Mon Mar 30 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47605 * 2 1 4 4 C 1.50707 * 109.46571 * 239.99856 * 2 1 3 5 5 H 1.08002 * 119.99669 * 240.00297 * 4 2 1 6 6 C 1.37875 * 119.99905 * 60.00362 * 4 2 1 7 7 N 1.31513 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99737 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46804 * 60.00479 * 8 6 4 10 10 H 1.48495 * 109.46858 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47189 * 300.00307 * 8 6 4 12 12 C 1.52998 * 109.46879 * 120.00300 * 2 1 3 13 13 S 1.81391 * 109.47123 * 299.99616 * 12 2 1 14 14 C 1.81408 * 103.00225 * 180.02562 * 13 12 2 15 15 C 1.53175 * 109.53974 * 65.44209 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85182 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 1.09007 * 109.47238 * 300.00447 * 1 2 3 21 21 H 1.09008 * 109.47262 * 59.99845 * 1 2 3 22 22 H 1.08998 * 109.47706 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47412 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47305 * 300.00047 * 3 2 1 25 25 H 1.08996 * 109.46816 * 59.99792 * 3 2 1 26 26 H 0.97001 * 119.99608 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47186 * 179.97438 * 12 2 1 28 28 H 1.09009 * 109.47317 * 59.99848 * 12 2 1 29 29 H 1.08997 * 109.61050 * 305.22577 * 14 13 12 30 30 H 1.09006 * 109.52647 * 296.75482 * 15 14 13 31 31 H 1.08998 * 109.52537 * 56.94374 * 15 14 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 33 33 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 34 34 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 35 35 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 36 36 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 37 37 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6530 -1.5887 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3222 -1.1197 -4.0080 9 1 1.8275 -2.5199 -4.0082 10 1 1.8276 -0.4193 -5.2204 11 1 3.8072 -1.1193 -4.0078 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1338 2.7303 14 6 2.1331 -0.8518 4.0840 15 6 3.6604 -0.7374 4.0666 16 6 4.2357 -1.5075 5.2582 17 8 3.6830 -0.9895 6.4700 18 6 2.2624 -1.1127 6.5628 19 6 1.6079 -0.3268 5.4237 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9562 0.8899 26 1 0.7095 1.1618 -3.4844 27 1 3.1299 -0.7217 1.2490 28 1 1.6765 -1.7490 1.2492 29 1 1.8443 -1.8959 3.9630 30 1 4.0469 -1.1598 3.1391 31 1 3.9480 0.3116 4.1378 32 1 5.3196 -1.3940 5.2753 33 1 3.9820 -2.5635 5.1653 34 1 1.9247 -0.7148 7.5198 35 1 1.9827 -2.1635 6.4870 36 1 1.8540 0.7305 5.5222 37 1 0.5264 -0.4556 5.4666 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572986709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:37 Heat of formation + Delta-G solvation = -84.892199 kcal Electronic energy + Delta-G solvation = -16139.234827 eV Core-core repulsion = 13620.336435 eV Total energy + Delta-G solvation = -2518.898392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13659 -37.84614 -34.70567 -33.53402 -32.11726 -28.06197 -27.57786 -27.15532 -25.98374 -24.49817 -21.45697 -20.76842 -18.04404 -17.65488 -16.96297 -16.69209 -16.54730 -15.90302 -15.55601 -15.11356 -15.06840 -14.74154 -14.28613 -13.66000 -13.39844 -13.20538 -13.10507 -12.79848 -12.65681 -12.47429 -12.32391 -12.23050 -12.06494 -11.88132 -11.47212 -11.37208 -11.24546 -11.10528 -10.53976 -10.40134 -10.20854 -8.47602 -8.01129 -6.19531 0.85993 1.43835 1.44333 1.51548 1.83702 2.45645 2.95400 3.21508 3.64914 3.67773 3.99621 4.13087 4.26903 4.29653 4.37701 4.44404 4.53451 4.63408 4.73516 4.77661 4.80511 4.93462 5.03859 5.05626 5.07742 5.21630 5.23864 5.24174 5.44897 5.64880 5.65072 6.08866 6.20037 6.22591 6.40505 6.85732 7.48314 8.97594 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.044858 B = 0.005352 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.045795 B = 5229.975193 C = 5559.536316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.072 3.928 3 C -0.118 4.118 4 C -0.526 4.526 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.043 4.043 13 S -0.289 6.289 14 C -0.058 4.058 15 C -0.147 4.147 16 C 0.067 3.933 17 O -0.398 6.398 18 C 0.067 3.933 19 C -0.129 4.129 20 H 0.031 0.969 21 H 0.057 0.943 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.259 0.741 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -4.564 15.084 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 C -0.176 4.176 4 C -0.566 4.566 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.191 4.191 13 S -0.058 6.058 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.011 4.011 17 O -0.317 6.317 18 C -0.011 4.011 19 C -0.168 4.168 20 H 0.050 0.950 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.574 -3.445 15.125 15.725 hybrid contribution 0.748 -1.432 -1.652 2.311 sum 3.322 -4.877 13.473 14.709 Atomic orbital electron populations 1.21683 0.97703 0.98485 0.99823 1.17961 0.92764 0.92483 0.89678 1.21672 0.97782 0.98393 0.99788 1.21318 1.31795 1.12211 0.91276 0.93135 1.25570 0.95128 0.95585 1.01304 1.69959 1.37127 1.23535 1.23630 0.85746 0.78686 0.78767 0.79195 1.19917 1.21084 1.19931 1.23464 1.01500 1.00128 0.94012 1.86845 1.71128 1.45761 1.02017 1.23262 0.98053 1.01272 0.96066 1.22479 0.93697 1.02498 0.99990 1.22675 0.99202 0.96585 0.82671 1.87904 1.21755 1.83160 1.38916 1.22731 0.80005 0.99730 0.98636 1.22003 1.01703 1.01116 0.91938 0.95007 0.92448 0.96070 0.96101 0.92461 0.95054 0.93105 0.91717 0.92019 0.89582 0.91214 0.91107 0.87250 0.91952 0.86503 0.91759 0.91245 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.01 71.98 0.58 -5.28 16 2 C 0.07 3.53 0.52 -52.93 -0.03 3.51 16 3 C -0.12 -5.84 8.01 71.98 0.58 -5.26 16 4 C -0.53 -28.09 8.01 25.60 0.21 -27.88 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.02 1.27 5.15 84.65 0.44 1.71 16 7 N -0.90 -50.36 9.35 21.45 0.20 -50.16 16 8 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 C -0.04 -1.77 4.60 71.98 0.33 -1.44 16 13 S -0.29 -10.35 18.21 -56.49 -1.03 -11.38 16 14 C -0.06 -1.54 2.74 30.71 0.08 -1.46 16 15 C -0.15 -3.65 5.30 30.68 0.16 -3.49 16 16 C 0.07 1.33 6.84 72.01 0.49 1.83 16 17 O -0.40 -8.78 10.77 -148.98 -1.60 -10.39 16 18 C 0.07 1.19 6.84 72.01 0.49 1.69 16 19 C -0.13 -2.83 5.43 30.68 0.17 -2.67 16 20 H 0.03 1.45 6.92 -2.38 -0.02 1.43 16 21 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 22 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 25 H 0.03 1.44 6.91 -2.39 -0.02 1.42 16 26 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.06 2.61 7.26 -2.39 -0.02 2.60 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 1.81 7.10 -2.38 -0.02 1.80 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -58.10 296.58 4.11 -53.99 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.02 Total: 11.95 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.50 Total: -38.75 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.20 Total: -50.16 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.60 Total: -10.39 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.03 Total: -11.38 kcal Total: -58.10 4.11 -53.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572986709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.903 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds