Wall clock time and date at job start Mon Mar 30 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.53002 * 109.47079 * 270.00099 * 3 2 1 6 6 S 1.81396 * 109.47219 * 64.99622 * 5 3 2 7 7 C 1.81394 * 103.00015 * 180.02562 * 6 5 3 8 8 C 1.50704 * 109.47216 * 180.02562 * 7 6 5 9 9 H 1.07994 * 119.99877 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99871 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99865 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00294 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47432 * 89.99626 * 12 10 8 14 14 H 1.48504 * 109.47248 * 209.99911 * 12 10 8 15 15 H 1.48502 * 109.46981 * 329.99672 * 12 10 8 16 16 C 1.52997 * 109.47264 * 150.00012 * 3 2 1 17 17 C 1.54262 * 110.03655 * 57.90646 * 16 3 2 18 18 C 1.54958 * 104.16417 * 217.13856 * 17 16 3 19 19 C 1.54894 * 102.77834 * 37.88761 * 18 17 16 20 20 C 1.53882 * 110.03107 * 300.68657 * 16 3 2 21 21 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 22 22 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 23 23 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47011 * 184.99710 * 5 3 2 25 25 H 1.09005 * 109.46847 * 304.99836 * 5 3 2 26 26 H 1.09005 * 109.47357 * 299.99889 * 7 6 5 27 27 H 1.08992 * 109.47352 * 60.00080 * 7 6 5 28 28 H 0.97001 * 120.00067 * 180.02562 * 11 10 8 29 29 H 1.09004 * 110.01604 * 179.30022 * 16 3 2 30 30 H 1.09003 * 110.48282 * 335.78680 * 17 16 3 31 31 H 1.09000 * 110.48623 * 98.42335 * 17 16 3 32 32 H 1.08999 * 110.71910 * 279.57351 * 18 17 16 33 33 H 1.08997 * 110.92433 * 156.29342 * 18 17 16 34 34 H 1.08997 * 110.48541 * 203.40941 * 19 18 17 35 35 H 1.08992 * 110.59750 * 80.81620 * 19 18 17 36 36 H 1.09000 * 110.03492 * 238.56671 * 20 16 3 37 37 H 1.09004 * 110.03201 * 359.95651 * 20 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 16 0.6065 1.9634 -2.2535 7 6 1.0533 2.5105 -3.9243 8 6 -0.1990 2.7180 -4.7366 9 1 -1.1668 2.5390 -4.2921 10 6 -0.1091 3.1373 -6.0471 11 7 -1.2019 3.3179 -6.7561 12 14 1.5648 3.4476 -6.8157 13 1 2.0614 2.1963 -7.4424 14 1 1.4459 4.5061 -7.8505 15 1 2.5181 3.8872 -5.7652 16 6 3.3589 1.2634 0.7212 17 6 4.2934 0.2455 0.0354 18 6 5.0702 -0.4057 1.2075 19 6 3.9916 -0.5165 2.3137 20 6 3.1673 0.7796 2.1694 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.7412 2.7274 -1.4438 25 1 2.8099 1.0319 -1.9815 26 1 1.6062 3.4480 -3.8639 27 1 1.6745 1.7524 -4.4010 28 1 -1.1387 3.6126 -7.6781 29 1 3.8161 2.2529 0.7156 30 1 3.7123 -0.5049 -0.5006 31 1 4.9794 0.7538 -0.6422 32 1 5.8902 0.2358 1.5303 33 1 5.4402 -1.3923 0.9287 34 1 4.4579 -0.5643 3.2977 35 1 3.3611 -1.3900 2.1484 36 1 3.5324 1.5338 2.8665 37 1 2.1133 0.5756 2.3586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:05 Heat of formation + Delta-G solvation = -72.579548 kcal Electronic energy + Delta-G solvation = -15898.602651 eV Core-core repulsion = 13380.238176 eV Total energy + Delta-G solvation = -2518.364475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.22856 -36.63547 -33.03223 -31.91040 -29.34277 -28.80820 -27.59690 -26.27453 -23.05033 -22.00565 -20.62792 -19.55918 -16.93230 -16.49178 -16.12147 -15.80180 -15.09441 -14.70806 -14.17757 -14.03336 -13.38364 -13.29443 -13.00008 -12.72883 -12.42559 -12.30081 -12.06444 -11.40400 -11.16726 -11.07850 -11.04900 -10.83627 -10.64162 -10.61661 -10.51998 -10.30488 -10.12142 -9.63068 -9.38730 -8.73950 -8.67085 -6.77482 -6.18164 -4.19908 2.49096 3.20989 3.28331 3.29468 3.66532 3.93621 4.30956 4.49316 4.67721 4.71720 5.10594 5.13342 5.22074 5.30850 5.43740 5.55346 5.56293 5.60438 5.66161 5.70206 5.75710 5.86861 5.88086 5.95041 6.04343 6.10018 6.24474 6.27306 6.31002 6.43509 6.60638 6.71169 7.41600 7.43867 8.30456 8.84275 9.38074 10.94000 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.038696 B = 0.005198 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.421630 B = 5385.221826 C = 5878.615893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.374 6.374 3 C 0.116 3.884 4 H 0.066 0.934 5 C -0.122 4.122 6 S -0.267 6.267 7 C 0.041 3.959 8 C -0.513 4.513 9 H 0.083 0.917 10 C 0.079 3.921 11 N -0.892 5.892 12 Si 0.878 3.122 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.114 4.114 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.841 -5.465 16.521 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.292 6.292 3 C 0.057 3.943 4 H 0.084 0.916 5 C -0.270 4.270 6 S -0.039 6.039 7 C -0.106 4.106 8 C -0.551 4.551 9 H 0.101 0.899 10 C -0.125 4.125 11 N -0.530 5.530 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.106 4.106 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.152 4.152 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.867 -5.733 16.737 20.257 hybrid contribution 1.781 0.724 -1.198 2.265 sum 11.648 -5.009 15.539 20.055 Atomic orbital electron populations 1.23145 0.80834 1.02497 1.01400 1.87829 1.19927 1.26647 1.94841 1.21806 0.94554 0.85347 0.92612 0.91629 1.24039 1.00209 1.03698 0.99086 1.86517 1.11785 1.89141 1.16477 1.21469 1.00868 0.97882 0.90392 1.20492 0.91910 1.46767 0.95973 0.89926 1.24865 0.96705 0.94467 0.96488 1.69869 1.27588 1.46081 1.09462 0.86800 0.84618 0.78602 0.79475 1.19894 1.20811 1.19167 1.21922 0.94042 0.99795 0.94806 1.22396 0.97354 0.98418 0.97347 1.22484 0.97495 1.00335 0.95833 1.22292 0.97167 0.98164 0.98079 1.22094 1.00727 0.97039 0.95309 0.94913 0.90632 0.90206 0.90339 0.90004 0.94955 0.95279 0.92258 0.90082 0.90168 0.92076 0.92012 0.91876 0.92349 0.91419 0.92271 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.57 101.05 1.07 1.33 16 2 O -0.37 -5.59 8.77 -35.23 -0.31 -5.90 16 3 C 0.12 1.62 1.86 -26.73 -0.05 1.57 16 4 H 0.07 0.92 7.79 -51.93 -0.40 0.51 16 5 C -0.12 -1.99 5.33 37.16 0.20 -1.79 16 6 S -0.27 -5.60 18.38 -107.50 -1.98 -7.58 16 7 C 0.04 1.01 4.77 36.01 0.17 1.19 16 8 C -0.51 -14.80 9.68 -34.44 -0.33 -15.13 16 9 H 0.08 2.61 7.96 -52.49 -0.42 2.19 16 10 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 11 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 12 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 16 C -0.09 -0.98 2.83 -89.50 -0.25 -1.23 16 17 C -0.12 -1.33 5.30 -25.04 -0.13 -1.47 16 18 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 19 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 20 C -0.11 -1.17 6.22 -25.61 -0.16 -1.33 16 21 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 22 H 0.08 1.27 4.87 -37.59 -0.18 1.08 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 1.35 7.39 -51.92 -0.38 0.96 16 26 H 0.03 0.78 7.20 -51.92 -0.37 0.41 16 27 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.05 7.02 -51.93 -0.36 0.69 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.74 7.40 -51.93 -0.38 0.35 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -30.03 301.98 -7.86 -37.89 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.30 Total: -1.78 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 0.07 Total: -17.37 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.31 Total: -5.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.98 Total: -7.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.03 -7.86 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.694 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds