Wall clock time and date at job start Mon Mar 30 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.53002 * 109.47079 * 270.00099 * 3 2 1 6 6 S 1.81396 * 109.47219 * 64.99622 * 5 3 2 7 7 C 1.81394 * 103.00015 * 180.02562 * 6 5 3 8 8 C 1.50704 * 109.47216 * 180.02562 * 7 6 5 9 9 H 1.07994 * 119.99877 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99871 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99865 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00294 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47432 * 89.99626 * 12 10 8 14 14 H 1.48504 * 109.47248 * 209.99911 * 12 10 8 15 15 H 1.48502 * 109.46981 * 329.99672 * 12 10 8 16 16 C 1.52997 * 109.47264 * 150.00012 * 3 2 1 17 17 C 1.54262 * 110.03655 * 57.90646 * 16 3 2 18 18 C 1.54958 * 104.16417 * 217.13856 * 17 16 3 19 19 C 1.54894 * 102.77834 * 37.88761 * 18 17 16 20 20 C 1.53882 * 110.03107 * 300.68657 * 16 3 2 21 21 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 22 22 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 23 23 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47011 * 184.99710 * 5 3 2 25 25 H 1.09005 * 109.46847 * 304.99836 * 5 3 2 26 26 H 1.09005 * 109.47357 * 299.99889 * 7 6 5 27 27 H 1.08992 * 109.47352 * 60.00080 * 7 6 5 28 28 H 0.97001 * 120.00067 * 180.02562 * 11 10 8 29 29 H 1.09004 * 110.01604 * 179.30022 * 16 3 2 30 30 H 1.09003 * 110.48282 * 335.78680 * 17 16 3 31 31 H 1.09000 * 110.48623 * 98.42335 * 17 16 3 32 32 H 1.08999 * 110.71910 * 279.57351 * 18 17 16 33 33 H 1.08997 * 110.92433 * 156.29342 * 18 17 16 34 34 H 1.08997 * 110.48541 * 203.40941 * 19 18 17 35 35 H 1.08992 * 110.59750 * 80.81620 * 19 18 17 36 36 H 1.09000 * 110.03492 * 238.56671 * 20 16 3 37 37 H 1.09004 * 110.03201 * 359.95651 * 20 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 16 0.6065 1.9634 -2.2535 7 6 1.0533 2.5105 -3.9243 8 6 -0.1990 2.7180 -4.7366 9 1 -1.1668 2.5390 -4.2921 10 6 -0.1091 3.1373 -6.0471 11 7 -1.2019 3.3179 -6.7561 12 14 1.5648 3.4476 -6.8157 13 1 2.0614 2.1963 -7.4424 14 1 1.4459 4.5061 -7.8505 15 1 2.5181 3.8872 -5.7652 16 6 3.3589 1.2634 0.7212 17 6 4.2934 0.2455 0.0354 18 6 5.0702 -0.4057 1.2075 19 6 3.9916 -0.5165 2.3137 20 6 3.1673 0.7796 2.1694 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.7412 2.7274 -1.4438 25 1 2.8099 1.0319 -1.9815 26 1 1.6062 3.4480 -3.8639 27 1 1.6745 1.7524 -4.4010 28 1 -1.1387 3.6126 -7.6781 29 1 3.8161 2.2529 0.7156 30 1 3.7123 -0.5049 -0.5006 31 1 4.9794 0.7538 -0.6422 32 1 5.8902 0.2358 1.5303 33 1 5.4402 -1.3923 0.9287 34 1 4.4579 -0.5643 3.2977 35 1 3.3611 -1.3900 2.1484 36 1 3.5324 1.5338 2.8665 37 1 2.1133 0.5756 2.3586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:04 Heat of formation + Delta-G solvation = -89.883858 kcal Electronic energy + Delta-G solvation = -15899.353022 eV Core-core repulsion = 13380.238176 eV Total energy + Delta-G solvation = -2519.114846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22863 -37.62187 -35.21762 -33.01358 -31.44680 -29.62803 -28.62279 -27.40786 -24.86955 -23.39804 -21.41869 -20.49614 -19.10518 -17.61301 -17.31232 -17.13889 -16.33567 -15.92459 -15.88401 -15.18983 -15.00790 -14.73238 -14.21891 -14.09397 -14.00323 -13.61930 -13.29051 -12.71684 -12.53401 -12.47225 -12.14027 -11.90180 -11.84263 -11.82612 -11.76408 -11.49012 -11.32733 -11.28877 -10.91162 -10.81468 -10.20161 -8.46064 -8.39323 -6.48846 0.91895 1.31391 1.33040 1.43760 1.96328 2.27104 2.84219 2.93369 3.58141 3.80535 3.86651 4.05421 4.12710 4.32770 4.47873 4.51570 4.60441 4.63850 4.68105 4.70207 4.73887 4.77591 4.87714 4.93928 4.95974 5.06196 5.09554 5.14986 5.30633 5.32429 5.40137 5.52365 5.59542 6.05163 6.27592 6.54768 7.13800 8.76442 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.038696 B = 0.005198 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.421630 B = 5385.221826 C = 5878.615893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.381 6.381 3 C 0.117 3.883 4 H 0.066 0.934 5 C -0.107 4.107 6 S -0.289 6.289 7 C 0.039 3.961 8 C -0.528 4.528 9 H 0.036 0.964 10 C 0.019 3.981 11 N -0.940 5.940 12 Si 0.954 3.046 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.248 1.248 16 C -0.082 4.082 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.113 4.113 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.273 0.727 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.705 -5.385 17.862 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.300 6.300 3 C 0.058 3.942 4 H 0.084 0.916 5 C -0.255 4.255 6 S -0.062 6.062 7 C -0.108 4.108 8 C -0.567 4.567 9 H 0.054 0.946 10 C -0.181 4.181 11 N -0.579 5.579 12 Si 0.776 3.224 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.171 1.171 16 C -0.102 4.102 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.150 4.150 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.724 -5.659 18.090 22.829 hybrid contribution 0.803 0.650 -1.512 1.831 sum 13.527 -5.009 16.579 21.976 Atomic orbital electron populations 1.23142 0.80678 1.03319 1.00683 1.87836 1.20144 1.27311 1.94719 1.21930 0.96160 0.84904 0.91191 0.91552 1.24190 0.96903 1.04680 0.99757 1.86669 1.15934 1.88912 1.14652 1.21272 0.98733 0.98337 0.92457 1.20685 0.91896 1.47080 0.97024 0.94609 1.25902 1.01428 0.93811 0.96930 1.70020 1.30516 1.47209 1.10147 0.85616 0.79029 0.78991 0.78808 1.18767 1.20014 1.17135 1.21968 0.92280 1.00794 0.95192 1.22388 0.97395 0.98002 0.97990 1.22478 0.97628 1.00674 0.94948 1.22292 0.96995 0.97348 0.99007 1.22097 1.00412 0.97814 0.94702 0.93280 0.93370 0.88761 0.88741 0.89961 0.94360 0.94781 0.91831 0.88518 0.92369 0.91539 0.90593 0.91576 0.90699 0.92585 0.90527 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.57 113.37 1.20 1.72 16 2 O -0.38 -10.95 8.77 -148.98 -1.31 -12.26 16 3 C 0.12 3.06 1.86 30.59 0.06 3.12 16 4 H 0.07 1.73 7.79 -2.38 -0.02 1.72 16 5 C -0.11 -3.30 5.33 71.98 0.38 -2.92 16 6 S -0.29 -12.17 18.38 -56.49 -1.04 -13.21 16 7 C 0.04 1.94 4.77 71.24 0.34 2.27 16 8 C -0.53 -31.42 9.68 25.60 0.25 -31.17 16 9 H 0.04 2.39 7.96 -2.91 -0.02 2.37 16 10 C 0.02 1.12 5.47 84.66 0.46 1.58 16 11 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 12 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 13 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 16 C -0.08 -1.66 2.83 -10.07 -0.03 -1.68 16 17 C -0.12 -2.44 5.30 31.69 0.17 -2.27 16 18 C -0.12 -1.96 6.91 31.91 0.22 -1.74 16 19 C -0.12 -1.97 6.83 31.67 0.22 -1.75 16 20 C -0.11 -1.99 6.22 31.32 0.19 -1.79 16 21 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 22 H 0.05 1.63 4.87 -11.51 -0.06 1.57 16 23 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.08 2.57 7.39 -2.39 -0.02 2.55 16 26 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 27 H 0.03 1.61 7.57 -2.39 -0.02 1.60 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 1.44 7.02 -2.39 -0.02 1.43 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.13 7.40 -2.38 -0.02 1.12 16 Total: -1.00 -66.25 301.98 4.21 -62.03 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.91 Total: 11.16 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 3.46 Total: -34.64 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.31 Total: -12.26 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: -12.17 SS G_CDS: -1.04 Total: -13.21 kcal Total: -66.25 4.21 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.851 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds