Wall clock time and date at job start Mon Mar 30 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 C 1.52996 * 109.47379 * 120.00459 * 2 1 3 5 5 C 1.50696 * 109.47439 * 185.00102 * 4 2 1 6 6 H 1.08009 * 119.99778 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00349 * 179.72445 * 5 4 2 8 8 N 1.31515 * 120.00546 * 180.27417 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 0.27343 * 7 5 4 10 10 H 1.48501 * 109.46869 * 90.00214 * 9 7 5 11 11 H 1.48506 * 109.46923 * 210.00140 * 9 7 5 12 12 H 1.48495 * 109.47096 * 330.00127 * 9 7 5 13 13 S 1.81400 * 109.47050 * 240.00443 * 2 1 3 14 14 C 1.81400 * 103.00033 * 67.08188 * 13 2 1 15 15 H 1.09000 * 110.98954 * 302.36956 * 14 13 2 16 16 C 1.54951 * 111.12597 * 178.12562 * 14 13 2 17 17 O 1.43639 * 105.13739 * 205.63537 * 16 14 13 18 18 C 1.43233 * 109.97197 * 24.42938 * 17 16 14 19 19 C 1.53005 * 109.83252 * 238.77349 * 18 17 16 20 20 C 1.53004 * 109.83078 * 117.79928 * 18 17 16 21 21 C 1.54386 * 107.58821 * 358.28861 * 18 17 16 22 22 H 1.08996 * 109.46898 * 294.59101 * 1 2 3 23 23 H 1.08996 * 109.46899 * 54.59681 * 1 2 3 24 24 H 1.09004 * 109.46598 * 174.58889 * 1 2 3 25 25 H 1.09005 * 109.47153 * 64.99992 * 4 2 1 26 26 H 1.09003 * 109.46983 * 305.00213 * 4 2 1 27 27 H 0.96993 * 120.00650 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.31017 * 324.55512 * 16 14 13 29 29 H 1.09001 * 110.30538 * 86.71971 * 16 14 13 30 30 H 1.08998 * 109.47260 * 178.13455 * 19 18 17 31 31 H 1.08995 * 109.46976 * 298.13534 * 19 18 17 32 32 H 1.08997 * 109.46439 * 58.13109 * 19 18 17 33 33 H 1.08998 * 109.47219 * 301.86482 * 20 18 17 34 34 H 1.08998 * 109.46831 * 61.86944 * 20 18 17 35 35 H 1.09001 * 109.47196 * 181.86421 * 20 18 17 36 36 H 1.08997 * 110.84467 * 220.45191 * 21 18 17 37 37 H 1.08994 * 111.02221 * 96.91306 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3126 6 1 4.0791 -0.0861 0.5391 7 6 4.2300 -1.1883 2.3608 8 7 5.5402 -1.0909 2.4191 9 14 3.3011 -2.1036 3.6984 10 1 3.1759 -3.5349 3.3233 11 1 4.0413 -1.9909 4.9809 12 1 1.9478 -1.5125 3.8544 13 16 2.1347 -0.8550 -1.4812 14 6 1.6218 0.2479 -2.8270 15 1 0.5430 0.4035 -2.8146 16 6 2.0934 -0.2910 -4.2011 17 8 2.1943 0.8678 -5.0438 18 6 2.3958 2.0386 -4.2437 19 6 1.2682 3.0412 -4.4976 20 6 3.7448 2.6747 -4.5850 21 6 2.3832 1.6000 -2.7635 22 1 -0.3633 0.4276 0.9344 23 1 -0.3633 0.5953 -0.8376 24 1 -0.3633 -1.0231 -0.0969 25 1 1.7517 -1.7716 1.2054 26 1 1.6054 -0.2619 2.1369 27 1 6.0243 -1.4939 3.1568 28 1 3.0656 -0.7744 -4.1045 29 1 1.3609 -0.9899 -4.6050 30 1 1.4092 3.9153 -3.8618 31 1 1.2825 3.3468 -5.5437 32 1 0.3097 2.5757 -4.2681 33 1 4.5412 1.9497 -4.4175 34 1 3.7473 2.9821 -5.6308 35 1 3.9069 3.5457 -3.9500 36 1 1.8430 2.3209 -2.1499 37 1 3.3969 1.4572 -2.3894 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600572040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:44 Heat of formation + Delta-G solvation = -85.244787 kcal Electronic energy + Delta-G solvation = -16113.151383 eV Core-core repulsion = 13594.237702 eV Total energy + Delta-G solvation = -2518.913681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78048 -36.44302 -34.24275 -34.09203 -32.94294 -29.85754 -28.26561 -26.89608 -24.93061 -23.31443 -22.12496 -20.93447 -18.88238 -17.81037 -17.28727 -16.77414 -16.41434 -15.86656 -15.13188 -14.98053 -14.70445 -14.55525 -14.27606 -14.07701 -13.75352 -13.41064 -13.25745 -12.98966 -12.83309 -12.68763 -12.56555 -12.31698 -12.20551 -11.92909 -11.73551 -11.65358 -11.42155 -11.35283 -10.76159 -10.59866 -10.46281 -8.49416 -8.23207 -6.26564 0.77990 1.36429 1.36857 1.47464 1.76621 2.37297 2.78974 3.11228 3.37264 3.71730 3.82756 3.98852 4.03800 4.08856 4.18619 4.20723 4.51553 4.60897 4.64126 4.70345 4.75771 4.85649 4.88026 4.89970 4.94408 4.95023 5.00863 5.08484 5.22027 5.23751 5.36413 5.37938 5.63784 6.02500 6.31900 6.80296 7.35468 8.92233 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.033842 B = 0.005944 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.169710 B = 4709.403145 C = 5010.224695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 H 0.072 0.928 4 C 0.004 3.996 5 C -0.514 4.514 6 H 0.041 0.959 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.242 1.242 13 S -0.265 6.265 14 C -0.093 4.093 15 H 0.111 0.889 16 C 0.080 3.920 17 O -0.382 6.382 18 C 0.099 3.901 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.136 4.136 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.019 0.981 26 H 0.040 0.960 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 6.659 -11.594 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 H 0.091 0.909 4 C -0.034 4.034 5 C -0.552 4.552 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.766 3.234 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.165 1.165 13 S -0.036 6.036 14 C -0.222 4.222 15 H 0.130 0.870 16 C 0.003 3.997 17 O -0.302 6.302 18 C 0.059 3.941 19 C -0.204 4.204 20 C -0.212 4.212 21 C -0.175 4.175 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.304 5.638 -11.772 17.267 hybrid contribution -0.110 0.473 1.142 1.241 sum -11.414 6.111 -10.630 16.752 Atomic orbital electron populations 1.22085 0.91751 1.03032 1.02859 1.23016 0.98485 1.00369 0.93879 0.90939 1.19425 0.94895 0.95902 0.93177 1.21370 0.91745 1.34100 1.08027 0.94091 1.25922 0.95513 0.97112 1.00623 1.70063 1.08516 1.47293 1.33356 0.85781 0.79994 0.79339 0.78284 1.19856 1.21155 1.16548 1.87300 1.78964 1.35586 1.01725 1.24823 1.03385 0.97442 0.96535 0.87050 1.23079 1.01110 0.88726 0.86829 1.88405 1.93820 1.15490 1.32504 1.22242 0.96655 0.86556 0.88671 1.22049 0.97062 0.98156 1.03111 1.22111 0.95182 1.00944 1.02915 1.23527 1.01093 0.95819 0.97110 0.90801 0.91340 0.91602 0.96292 0.94183 0.92758 0.92698 0.87462 0.90037 0.91299 0.92027 0.93494 0.91038 0.90201 0.88878 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.07 71.98 0.65 -3.18 16 2 C -0.03 -1.07 2.66 30.59 0.08 -0.99 16 3 H 0.07 2.76 7.99 -2.39 -0.02 2.74 16 4 C 0.00 0.19 3.51 29.85 0.10 0.30 16 5 C -0.51 -29.22 9.09 25.60 0.23 -28.98 16 6 H 0.04 2.59 7.84 -2.91 -0.02 2.57 16 7 C 0.00 0.27 5.47 84.65 0.46 0.74 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.94 44.18 27.47 68.60 1.88 46.07 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 13 S -0.26 -9.95 19.90 -56.49 -1.12 -11.08 16 14 C -0.09 -2.59 3.39 32.05 0.11 -2.49 16 15 H 0.11 2.71 7.37 -2.39 -0.02 2.69 16 16 C 0.08 2.16 7.27 72.65 0.53 2.68 16 17 O -0.38 -10.35 10.68 -148.98 -1.59 -11.94 16 18 C 0.10 2.34 1.27 -10.32 -0.01 2.32 16 19 C -0.15 -2.67 8.73 71.98 0.63 -2.04 16 20 C -0.15 -3.42 8.75 71.98 0.63 -2.79 16 21 C -0.14 -3.67 5.33 31.86 0.17 -3.50 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.07 1.57 7.26 -2.39 -0.02 1.55 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.02 0.87 7.58 -2.38 -0.02 0.85 16 26 H 0.04 1.76 7.19 -2.39 -0.02 1.74 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.05 1.65 8.02 -2.39 -0.02 1.63 16 29 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16 37 H 0.07 2.20 7.74 -2.39 -0.02 2.18 16 Total: -1.00 -66.10 307.70 4.01 -62.09 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.95 Total: 12.62 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 3.59 Total: -37.93 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.30 Total: -59.83 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.59 Total: -11.94 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.12 Total: -11.08 kcal Total: -66.10 4.01 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600572040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.153 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds