Wall clock time and date at job start Mon Mar 30 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50697 * 109.47173 * 174.99519 * 4 2 1 6 6 H 1.08007 * 119.99916 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00355 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47062 * 119.99736 * 9 7 5 12 12 H 1.48495 * 109.47299 * 240.00155 * 9 7 5 13 13 S 1.81391 * 109.47235 * 120.00162 * 2 1 3 14 14 C 1.81402 * 103.00320 * 295.00523 * 13 2 1 15 15 H 1.09003 * 110.98730 * 50.79407 * 14 13 2 16 16 C 1.54948 * 111.12251 * 286.55701 * 14 13 2 17 17 O 1.43642 * 105.13800 * 205.63560 * 16 14 13 18 18 C 1.43235 * 109.96963 * 24.42471 * 17 16 14 19 19 C 1.53000 * 109.83387 * 238.77690 * 18 17 16 20 20 C 1.53007 * 109.82944 * 117.80330 * 18 17 16 21 21 C 1.54380 * 107.58926 * 358.28987 * 18 17 16 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 26 26 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 27 27 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 28 28 H 1.09004 * 110.31081 * 324.55066 * 16 14 13 29 29 H 1.09005 * 110.30975 * 86.71644 * 16 14 13 30 30 H 1.08999 * 109.47425 * 178.13758 * 19 18 17 31 31 H 1.09004 * 109.46717 * 298.13907 * 19 18 17 32 32 H 1.08995 * 109.47180 * 58.13300 * 19 18 17 33 33 H 1.08996 * 109.47108 * 301.87027 * 20 18 17 34 34 H 1.08996 * 109.46784 * 61.86796 * 20 18 17 35 35 H 1.08995 * 109.46777 * 181.86457 * 20 18 17 36 36 H 1.09000 * 110.84712 * 220.44789 * 21 18 17 37 37 H 1.09002 * 110.84803 * 96.83448 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0859 -0.5392 7 6 4.2305 -1.1933 -2.3579 8 7 3.5766 -1.8376 -3.2995 9 14 6.0923 -1.0619 -2.4362 10 1 6.5839 -0.2924 -1.2651 11 1 6.6857 -2.4231 -2.4180 12 1 6.4872 -0.3664 -3.6873 13 16 2.1347 -0.8551 1.4810 14 6 1.5664 0.2151 2.8309 15 1 0.5036 0.4366 2.7326 16 6 2.4045 1.5164 2.9024 17 8 2.3107 1.9484 4.2691 18 6 2.0231 0.8303 5.1169 19 6 0.7158 1.0750 5.8732 20 6 3.1685 0.6239 6.1102 21 6 1.8813 -0.4147 4.2151 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7517 -1.7715 -1.2057 26 1 1.6055 -0.2616 -2.1370 27 1 4.0610 -2.2443 -4.0350 28 1 3.4428 1.3126 2.6405 29 1 1.9871 2.2723 2.2372 30 1 0.4855 0.2071 6.4911 31 1 0.8224 1.9548 6.5077 32 1 -0.0918 1.2375 5.1595 33 1 4.0988 0.4667 5.5645 34 1 3.2633 1.5058 6.7436 35 1 2.9591 -0.2478 6.7301 36 1 1.0579 -1.0451 4.5508 37 1 2.8139 -0.9779 4.1819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600572042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:47 Heat of formation + Delta-G solvation = -72.421511 kcal Electronic energy + Delta-G solvation = -16013.232269 eV Core-core repulsion = 13494.874646 eV Total energy + Delta-G solvation = -2518.357622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70088 -34.56784 -33.18993 -32.17452 -31.68051 -27.50474 -27.44702 -25.83905 -23.31563 -22.05186 -20.44573 -20.03002 -16.63696 -16.34642 -16.02469 -15.37943 -14.68511 -14.51052 -13.93915 -13.75298 -13.47977 -13.09709 -12.82638 -12.52847 -12.31274 -12.01368 -11.83547 -11.70913 -11.56757 -11.36104 -11.14271 -10.89979 -10.77288 -10.59881 -10.48856 -10.11986 -9.50909 -9.44460 -9.22541 -8.99533 -8.35895 -6.97751 -6.00896 -4.01695 2.21395 3.25794 3.33031 3.40533 3.45942 3.85505 4.46301 4.47538 4.77081 4.80022 5.03949 5.07590 5.25387 5.36816 5.48610 5.59131 5.62018 5.64413 5.72053 5.73038 5.78816 5.81929 5.92612 5.96314 6.03212 6.13669 6.22424 6.33460 6.57564 6.69677 7.10207 7.51470 7.61801 7.96811 8.34844 9.03252 9.61951 11.10639 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.005919 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.919991 B = 4729.167552 C = 5275.480762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 H 0.074 0.926 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 S -0.207 6.207 14 C -0.115 4.115 15 H 0.092 0.908 16 C 0.061 3.939 17 O -0.376 6.376 18 C 0.103 3.897 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.119 4.119 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 4.427 15.581 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 S 0.023 5.977 14 C -0.244 4.244 15 H 0.110 0.890 16 C -0.017 4.017 17 O -0.296 6.296 18 C 0.062 3.938 19 C -0.209 4.209 20 C -0.211 4.211 21 C -0.157 4.157 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.765 3.569 15.549 16.649 hybrid contribution 0.252 0.932 -0.447 1.064 sum -4.513 4.501 15.102 16.392 Atomic orbital electron populations 1.22115 0.95385 1.02246 1.00645 1.23420 0.95986 1.01534 0.96547 0.90754 1.19025 0.96552 0.95614 0.88709 1.21273 0.91497 1.34328 1.08019 0.91819 1.24986 0.98425 0.95274 0.95660 1.69965 1.35474 1.36096 1.12143 0.86536 0.85835 0.77817 0.77898 1.19559 1.21043 1.21139 1.87187 1.75193 1.36299 0.99035 1.24875 1.02563 0.98736 0.98233 0.88990 1.23821 1.00086 0.94661 0.83144 1.88394 1.92279 1.31895 1.17021 1.22059 0.94828 0.85834 0.91070 1.22071 0.96453 1.02068 1.00260 1.22096 0.98227 1.01870 0.98901 1.23001 1.03590 0.97319 0.91826 0.91914 0.94114 0.92128 0.95575 0.94955 0.93063 0.90583 0.89928 0.91587 0.92039 0.92213 0.91907 0.92054 0.91605 0.89635 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.10 37.16 0.34 -2.07 16 2 C -0.05 -0.93 2.77 -26.73 -0.07 -1.00 16 3 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 4 C 0.04 0.98 4.45 -27.89 -0.12 0.86 16 5 C -0.51 -14.19 8.53 -34.44 -0.29 -14.49 16 6 H 0.06 1.75 7.60 -52.48 -0.40 1.35 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 S -0.21 -3.94 19.90 -107.50 -2.14 -6.08 16 14 C -0.11 -1.70 3.39 -24.49 -0.08 -1.79 16 15 H 0.09 1.30 6.87 -51.93 -0.36 0.95 16 16 C 0.06 0.92 7.27 38.19 0.28 1.20 16 17 O -0.38 -5.52 10.68 -35.23 -0.38 -5.90 16 18 C 0.10 1.24 1.27 -89.89 -0.11 1.12 16 19 C -0.15 -1.52 8.73 37.16 0.32 -1.19 16 20 C -0.15 -1.62 8.75 37.16 0.33 -1.29 16 21 C -0.12 -1.51 5.58 -24.79 -0.14 -1.65 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.96 7.82 -51.93 -0.41 0.55 16 37 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -29.62 310.84 -8.31 -37.94 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.54 Total: -2.67 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 0.34 Total: -18.77 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.38 Total: -5.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.14 Total: -6.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.62 -8.31 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600572042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.485 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds