Wall clock time and date at job start Mon Mar 30 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50697 * 109.47173 * 174.99519 * 4 2 1 6 6 H 1.08007 * 119.99916 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00355 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47062 * 119.99736 * 9 7 5 12 12 H 1.48495 * 109.47299 * 240.00155 * 9 7 5 13 13 S 1.81391 * 109.47235 * 120.00162 * 2 1 3 14 14 C 1.81402 * 103.00320 * 295.00523 * 13 2 1 15 15 H 1.09003 * 110.98730 * 50.79407 * 14 13 2 16 16 C 1.54948 * 111.12251 * 286.55701 * 14 13 2 17 17 O 1.43642 * 105.13800 * 205.63560 * 16 14 13 18 18 C 1.43235 * 109.96963 * 24.42471 * 17 16 14 19 19 C 1.53000 * 109.83387 * 238.77690 * 18 17 16 20 20 C 1.53007 * 109.82944 * 117.80330 * 18 17 16 21 21 C 1.54380 * 107.58926 * 358.28987 * 18 17 16 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 26 26 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 27 27 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 28 28 H 1.09004 * 110.31081 * 324.55066 * 16 14 13 29 29 H 1.09005 * 110.30975 * 86.71644 * 16 14 13 30 30 H 1.08999 * 109.47425 * 178.13758 * 19 18 17 31 31 H 1.09004 * 109.46717 * 298.13907 * 19 18 17 32 32 H 1.08995 * 109.47180 * 58.13300 * 19 18 17 33 33 H 1.08996 * 109.47108 * 301.87027 * 20 18 17 34 34 H 1.08996 * 109.46784 * 61.86796 * 20 18 17 35 35 H 1.08995 * 109.46777 * 181.86457 * 20 18 17 36 36 H 1.09000 * 110.84712 * 220.44789 * 21 18 17 37 37 H 1.09002 * 110.84803 * 96.83448 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0859 -0.5392 7 6 4.2305 -1.1933 -2.3579 8 7 3.5766 -1.8376 -3.2995 9 14 6.0923 -1.0619 -2.4362 10 1 6.5839 -0.2924 -1.2651 11 1 6.6857 -2.4231 -2.4180 12 1 6.4872 -0.3664 -3.6873 13 16 2.1347 -0.8551 1.4810 14 6 1.5664 0.2151 2.8309 15 1 0.5036 0.4366 2.7326 16 6 2.4045 1.5164 2.9024 17 8 2.3107 1.9484 4.2691 18 6 2.0231 0.8303 5.1169 19 6 0.7158 1.0750 5.8732 20 6 3.1685 0.6239 6.1102 21 6 1.8813 -0.4147 4.2151 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7517 -1.7715 -1.2057 26 1 1.6055 -0.2616 -2.1370 27 1 4.0610 -2.2443 -4.0350 28 1 3.4428 1.3126 2.6405 29 1 1.9871 2.2723 2.2372 30 1 0.4855 0.2071 6.4911 31 1 0.8224 1.9548 6.5077 32 1 -0.0918 1.2375 5.1595 33 1 4.0988 0.4667 5.5645 34 1 3.2633 1.5058 6.7436 35 1 2.9591 -0.2478 6.7301 36 1 1.0579 -1.0451 4.5508 37 1 2.8139 -0.9779 4.1819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600572042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:47 Heat of formation + Delta-G solvation = -88.643961 kcal Electronic energy + Delta-G solvation = -16013.935727 eV Core-core repulsion = 13494.874646 eV Total energy + Delta-G solvation = -2519.061080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75673 -36.41112 -34.19402 -34.04862 -32.90364 -29.39587 -28.23597 -26.87928 -25.26314 -23.27869 -22.10368 -21.03201 -18.50388 -17.79480 -17.28347 -16.70836 -16.52624 -15.84948 -15.13785 -14.98984 -14.58808 -14.46995 -14.19437 -13.87670 -13.66876 -13.30726 -13.22681 -12.91978 -12.75830 -12.61400 -12.58740 -12.40259 -12.36562 -12.13117 -11.82529 -11.66062 -11.26314 -11.17170 -10.65563 -10.56760 -10.43637 -8.50773 -8.19127 -6.26450 0.79525 1.38672 1.40181 1.52908 1.78760 2.41854 2.81927 3.16161 3.38524 3.70654 3.85923 4.02406 4.07051 4.11703 4.20816 4.23224 4.51013 4.61537 4.66792 4.74408 4.78733 4.86961 4.90157 4.92420 4.96537 5.00251 5.02865 5.19274 5.27170 5.39255 5.39509 5.53641 5.79120 6.06402 6.21245 6.86022 7.41021 8.93058 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.030900 B = 0.005919 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.919991 B = 4729.167552 C = 5275.480762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 H 0.073 0.927 4 C 0.045 3.955 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.278 1.278 13 S -0.251 6.251 14 C -0.096 4.096 15 H 0.106 0.894 16 C 0.063 3.937 17 O -0.388 6.388 18 C 0.096 3.904 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.116 4.116 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.066 0.934 25 H -0.003 1.003 26 H 0.011 0.989 27 H 0.262 0.738 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 5.046 17.585 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 H 0.092 0.908 4 C 0.007 3.993 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.204 1.204 13 S -0.022 6.022 14 C -0.225 4.225 15 H 0.125 0.875 16 C -0.015 4.015 17 O -0.309 6.309 18 C 0.056 3.944 19 C -0.205 4.205 20 C -0.210 4.210 21 C -0.154 4.154 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.015 0.985 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.034 4.196 17.558 18.741 hybrid contribution 0.320 0.750 -0.992 1.284 sum -4.714 4.946 16.567 17.920 Atomic orbital electron populations 1.22031 0.92545 1.02580 1.02356 1.23173 0.98276 1.00451 0.94884 0.90827 1.18824 0.95507 0.94255 0.90684 1.21591 0.92922 1.33784 1.07734 0.92018 1.25839 1.03174 0.95049 0.95416 1.70081 1.37333 1.37184 1.12869 0.85516 0.80195 0.77903 0.78211 1.18841 1.20697 1.20351 1.87237 1.76295 1.37922 1.00713 1.24863 1.02957 0.97724 0.96986 0.87543 1.23693 0.99159 0.94858 0.83825 1.88394 1.92488 1.33175 1.16795 1.22322 0.96586 0.84570 0.90903 1.22070 0.94897 1.03319 1.00247 1.22109 0.97049 1.03133 0.98709 1.23058 1.03974 0.97874 0.90509 0.92265 0.91264 0.91500 0.98483 0.97081 0.92906 0.92358 0.89502 0.89372 0.91651 0.92441 0.93225 0.91502 0.89443 0.87535 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.10 71.98 0.66 -3.71 16 2 C -0.04 -1.58 2.77 30.60 0.08 -1.49 16 3 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 4 C 0.05 2.34 4.45 29.85 0.13 2.47 16 5 C -0.52 -29.43 8.53 25.60 0.22 -29.21 16 6 H 0.06 3.43 7.60 -2.91 -0.02 3.41 16 7 C 0.00 0.15 5.46 84.66 0.46 0.62 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 10 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 S -0.25 -9.48 19.90 -56.49 -1.12 -10.60 16 14 C -0.10 -2.67 3.39 32.05 0.11 -2.56 16 15 H 0.11 2.69 6.87 -2.39 -0.02 2.68 16 16 C 0.06 1.83 7.27 72.65 0.53 2.36 16 17 O -0.39 -10.69 10.68 -148.98 -1.59 -12.28 16 18 C 0.10 2.07 1.27 -10.32 -0.01 2.06 16 19 C -0.15 -2.46 8.73 71.98 0.63 -1.84 16 20 C -0.15 -2.85 8.75 71.98 0.63 -2.22 16 21 C -0.12 -2.67 5.58 31.85 0.18 -2.49 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 23 H 0.07 1.82 6.75 -2.39 -0.02 1.81 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 29 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 2.02 7.82 -2.39 -0.02 2.00 16 37 H 0.08 1.96 7.73 -2.39 -0.02 1.94 16 Total: -1.00 -64.13 310.84 4.22 -59.92 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.01 Total: 8.37 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.61 Total: -36.03 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.51 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.59 Total: -12.28 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.12 Total: -10.60 kcal Total: -64.13 4.22 -59.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600572042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.726 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds