Wall clock time and date at job start Mon Mar 30 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.82672 * 2 1 4 4 C 1.54387 * 109.83143 * 239.11102 * 2 1 3 5 5 C 1.55453 * 102.18557 * 219.18453 * 4 2 1 6 6 H 1.09001 * 111.05567 * 276.11698 * 5 4 2 7 7 S 1.81402 * 111.18134 * 152.01018 * 5 4 2 8 8 C 1.81394 * 102.99984 * 181.89689 * 7 5 4 9 9 C 1.53002 * 109.47499 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47303 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46736 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00590 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99607 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99948 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47043 * 90.00180 * 15 13 11 17 17 H 1.48502 * 109.47309 * 210.00160 * 15 13 11 18 18 H 1.48497 * 109.47293 * 330.00049 * 15 13 11 19 19 C 1.54942 * 100.98996 * 34.03649 * 5 4 2 20 20 O 1.43242 * 109.83200 * 120.88829 * 2 1 3 21 21 H 1.09002 * 109.47153 * 60.70117 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.70308 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.70289 * 1 2 3 24 24 H 1.09001 * 109.46786 * 59.29790 * 3 2 1 25 25 H 1.09000 * 109.47074 * 179.30504 * 3 2 1 26 26 H 1.09005 * 109.46576 * 299.29720 * 3 2 1 27 27 H 1.09004 * 110.84583 * 337.32216 * 4 2 1 28 28 H 1.09004 * 110.84742 * 100.94019 * 4 2 1 29 29 H 1.09000 * 109.47255 * 299.99737 * 8 7 5 30 30 H 1.09004 * 109.47269 * 59.99579 * 8 7 5 31 31 H 1.09000 * 109.46717 * 300.00146 * 9 8 7 32 32 H 1.08998 * 109.46704 * 59.99470 * 9 8 7 33 33 H 1.09000 * 109.46725 * 299.99429 * 10 9 8 34 34 H 1.08990 * 109.47505 * 59.99918 * 10 9 8 35 35 H 0.96998 * 120.00545 * 180.02562 * 14 13 11 36 36 H 1.09000 * 110.30890 * 204.68758 * 19 5 4 37 37 H 1.09007 * 110.38970 * 82.56841 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0537 -0.7456 -1.2463 5 6 3.2730 -1.5228 -0.6754 6 1 4.1620 -0.8927 -0.6499 7 16 3.5807 -3.0426 -1.6169 8 6 4.9841 -3.7876 -0.7418 9 6 5.3718 -5.1009 -1.4243 10 6 6.5551 -5.7296 -0.6857 11 6 6.9373 -7.0228 -1.3584 12 1 6.3906 -7.3626 -2.2256 13 6 7.9849 -7.7723 -0.8667 14 7 8.3182 -8.9011 -1.4533 15 14 8.9310 -7.1843 0.6329 16 1 8.2947 -7.7226 1.8620 17 1 10.3344 -7.6628 0.5518 18 1 8.9159 -5.7000 0.6771 19 6 2.7747 -1.8438 0.7561 20 8 2.0159 -0.6917 1.1564 21 1 -0.3633 0.5029 -0.8962 22 1 -0.3633 0.5247 0.8836 23 1 -0.3634 -1.0276 0.0126 24 1 1.6785 1.9591 0.8836 25 1 3.1388 1.4326 0.0125 26 1 1.6990 1.9516 -0.8963 27 1 1.3011 -1.4337 -1.6315 28 1 2.3672 -0.0409 -2.0167 29 1 5.8314 -3.1023 -0.7640 30 1 4.7037 -3.9851 0.2929 31 1 4.5243 -5.7860 -1.4016 32 1 5.6520 -4.9037 -2.4590 33 1 7.4027 -5.0445 -0.7081 34 1 6.2745 -5.9268 0.3488 35 1 9.0549 -9.4286 -1.1072 36 1 3.6210 -1.9913 1.4271 37 1 2.1405 -2.7303 0.7476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600577066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:51 Heat of formation + Delta-G solvation = -73.241134 kcal Electronic energy + Delta-G solvation = -15388.096677 eV Core-core repulsion = 12869.703513 eV Total energy + Delta-G solvation = -2518.393164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99791 -34.63733 -33.45751 -32.18936 -32.07840 -28.12776 -27.64894 -26.12346 -23.35899 -22.20014 -20.36113 -20.17632 -17.07045 -16.79538 -16.23839 -15.59265 -14.90722 -14.70571 -14.23012 -14.02673 -13.88000 -13.51176 -13.09441 -12.69964 -12.43720 -12.35982 -12.13583 -11.98374 -11.93065 -11.67856 -11.32022 -11.11491 -10.93175 -10.88431 -10.06498 -9.89313 -9.79142 -9.75082 -9.56457 -9.24281 -8.57026 -7.61971 -6.06968 -4.05687 1.64554 2.64775 3.28305 3.35912 3.38396 3.54526 4.12040 4.42152 4.46571 4.53163 4.72190 4.82897 4.91326 5.25590 5.29562 5.32483 5.37666 5.38373 5.40539 5.43237 5.55563 5.58470 5.62920 5.72632 5.87562 5.93116 5.99064 6.36122 6.45728 6.77553 6.81683 7.21172 7.33587 7.74116 8.50313 8.97834 9.54690 11.06463 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.051400 B = 0.003938 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.616322 B = 7109.285427 C = 7387.769920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.101 4.101 6 H 0.099 0.901 7 S -0.245 6.245 8 C -0.081 4.081 9 C -0.087 4.087 10 C -0.007 4.007 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.059 3.941 20 O -0.372 6.372 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 19.771 3.080 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 C -0.210 4.210 4 C -0.158 4.158 5 C -0.230 4.230 6 H 0.117 0.883 7 S -0.015 6.015 8 C -0.229 4.229 9 C -0.126 4.126 10 C -0.046 4.046 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.020 4.020 20 O -0.291 6.291 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.798 19.317 2.379 23.858 hybrid contribution 1.390 0.515 1.632 2.205 sum -12.408 19.832 4.011 23.735 Atomic orbital electron populations 1.22104 0.93878 1.02788 1.02381 1.22094 0.94222 0.92620 0.84844 1.22089 1.01733 0.94789 1.02404 1.23079 0.96047 0.98887 0.97819 1.24852 1.01937 0.98241 0.98016 0.88316 1.86909 1.45461 1.23992 1.45173 1.23692 0.96184 1.01517 1.01520 1.21283 1.00056 0.91659 0.99635 1.19569 0.92912 0.96521 0.95646 1.21105 1.16083 1.04032 1.14769 0.90897 1.25029 0.96861 0.94658 0.96913 1.69910 1.29304 1.13919 1.40977 0.86772 0.79318 0.79623 0.83525 1.20238 1.21315 1.19079 1.23818 0.95419 0.89430 0.93287 1.88433 1.70646 1.40218 1.29847 0.91436 0.91826 0.91926 0.91817 0.92113 0.91405 0.89342 0.89226 0.90446 0.90431 0.91734 0.91733 0.96484 0.96886 0.92669 0.89563 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.74 37.16 0.32 -0.93 16 2 C 0.10 0.98 1.27 -89.89 -0.11 0.86 16 3 C -0.15 -1.23 8.73 37.16 0.32 -0.90 16 4 C -0.12 -1.16 5.60 -24.70 -0.14 -1.30 16 5 C -0.10 -1.16 3.61 -24.40 -0.09 -1.25 16 6 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 7 S -0.24 -3.51 21.21 -107.50 -2.28 -5.79 16 8 C -0.08 -1.28 5.83 37.16 0.22 -1.07 16 9 C -0.09 -1.72 5.16 -26.73 -0.14 -1.86 16 10 C -0.01 -0.17 4.04 -27.88 -0.11 -0.28 16 11 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 15 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 19 C 0.06 0.68 7.16 38.18 0.27 0.96 16 20 O -0.37 -4.47 10.68 -35.23 -0.38 -4.85 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.88 7.74 -51.93 -0.40 0.48 16 28 H 0.09 0.75 7.82 -51.93 -0.41 0.35 16 29 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.90 8.03 -51.92 -0.42 0.48 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -30.43 311.69 -8.39 -38.82 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.65 Total: -3.56 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 0.12 Total: -19.14 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.38 Total: -4.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.28 Total: -5.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.43 -8.39 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600577066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.421 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds