Wall clock time and date at job start Mon Mar 30 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47554 * 2 1 4 4 C 1.42900 * 114.00147 * 175.08970 * 3 2 1 5 5 H 1.08997 * 109.47191 * 333.67182 * 4 3 2 6 6 C 1.53007 * 109.46572 * 213.67717 * 4 3 2 7 7 S 1.81394 * 109.47207 * 65.00237 * 6 4 3 8 8 C 1.81399 * 102.99884 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.47342 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47293 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99888 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99997 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47444 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47328 * 119.99810 * 14 12 10 17 17 H 1.48504 * 109.47263 * 239.99993 * 14 12 10 18 18 C 1.52998 * 109.47438 * 93.67813 * 4 3 2 19 19 C 1.52998 * 117.49670 * 254.58617 * 18 4 3 20 20 C 1.53000 * 117.50069 * 185.92824 * 18 4 3 21 21 H 1.08997 * 109.46889 * 300.00797 * 1 2 3 22 22 H 1.08999 * 109.46566 * 59.99857 * 1 2 3 23 23 H 1.08994 * 109.47417 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46985 * 119.99674 * 2 1 3 25 25 H 1.09000 * 109.47389 * 239.99750 * 2 1 3 26 26 H 1.09008 * 109.46501 * 185.00263 * 6 4 3 27 27 H 1.08997 * 109.47167 * 304.99695 * 6 4 3 28 28 H 1.09003 * 109.46825 * 299.99236 * 8 7 6 29 29 H 1.08994 * 109.47919 * 59.99587 * 8 7 6 30 30 H 1.09004 * 109.46864 * 299.99950 * 9 8 7 31 31 H 1.08999 * 109.47071 * 59.99752 * 9 8 7 32 32 H 0.97001 * 119.99829 * 180.02562 * 13 12 10 33 33 H 1.09003 * 115.55005 * 40.25599 * 18 4 3 34 34 H 1.08998 * 117.49920 * 359.97438 * 19 18 4 35 35 H 1.09002 * 117.49747 * 145.01846 * 19 18 4 36 36 H 1.09003 * 117.49630 * 214.98476 * 20 18 4 37 37 H 1.09001 * 117.49438 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4616 0.1117 5 1 3.8221 0.5860 0.6263 6 6 3.7755 2.7214 0.9068 7 16 3.1726 2.5487 2.6089 8 6 3.6717 4.1132 3.3793 9 6 3.2278 4.1252 4.8435 10 6 3.6430 5.4247 5.4837 11 1 4.1711 6.1676 4.9043 12 6 3.3496 5.6648 6.8094 13 7 2.7070 4.7600 7.5149 14 14 3.8649 7.2753 7.6031 15 1 4.5690 8.1173 6.6028 16 1 2.6610 7.9924 8.0947 17 1 4.7749 6.9965 8.7430 18 6 4.0423 1.5536 -1.2858 19 6 4.7635 0.3156 -1.8228 20 6 5.5689 1.5423 -1.3872 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.8571 2.8568 0.9164 27 1 3.3051 3.5872 0.4408 28 1 4.7558 4.2143 3.3272 29 1 3.2036 4.9440 2.8514 30 1 2.1437 4.0243 4.8953 31 1 3.6956 3.2945 5.3718 32 1 2.5002 4.9291 8.4475 33 1 3.4949 2.1671 -2.0014 34 1 4.7995 -0.5641 -1.1802 35 1 4.6908 0.1150 -2.8917 36 1 6.0258 2.1482 -2.1697 37 1 6.1344 1.4698 -0.4582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600637357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:38 Heat of formation + Delta-G solvation = -45.850769 kcal Electronic energy + Delta-G solvation = -15225.424196 eV Core-core repulsion = 12708.218768 eV Total energy + Delta-G solvation = -2517.205428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99803 -36.50482 -33.64275 -32.07106 -30.81837 -29.80142 -25.32305 -24.16766 -22.83456 -22.49983 -21.16403 -20.32639 -17.25826 -16.48152 -16.13330 -15.47437 -15.06059 -14.48019 -14.29353 -14.24302 -13.90921 -13.09715 -13.07478 -12.51358 -12.21040 -12.01985 -11.95018 -11.73051 -11.45182 -11.21177 -11.08444 -11.00695 -10.58171 -10.55710 -10.27429 -10.15298 -9.65559 -9.51906 -9.33489 -8.99024 -8.39720 -7.01595 -6.03455 -4.07680 2.23983 3.29919 3.32130 3.37834 3.41650 3.47659 3.67237 4.44049 4.56528 4.65600 4.77410 4.98380 5.07438 5.15345 5.32027 5.32169 5.35525 5.39059 5.40253 5.44817 5.65133 5.71954 5.87948 5.90408 5.94727 5.98198 6.05440 6.15450 6.24466 6.78488 7.26530 7.60672 7.69930 7.93567 8.31044 8.97624 9.56028 11.07468 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.004261 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.843682 B = 6570.049134 C = 7233.992649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.142 3.858 5 H 0.068 0.932 6 C -0.087 4.087 7 S -0.278 6.278 8 C -0.059 4.059 9 C 0.037 3.963 10 C -0.520 4.520 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.170 4.170 19 C -0.179 4.179 20 C -0.173 4.173 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -9.299 -18.084 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.285 6.285 4 C 0.083 3.917 5 H 0.086 0.914 6 C -0.236 4.236 7 S -0.050 6.050 8 C -0.207 4.207 9 C -0.001 4.001 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.190 4.190 19 C -0.216 4.216 20 C -0.210 4.210 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.103 -10.033 -17.472 20.178 hybrid contribution 1.091 1.692 -0.076 2.015 sum 2.194 -8.341 -17.548 19.553 Atomic orbital electron populations 1.21728 0.93842 1.01917 1.03304 1.22477 0.95598 0.83971 0.99686 1.87980 1.20123 1.26206 1.94233 1.21222 0.81931 0.96985 0.91593 0.91382 1.23401 1.03162 1.00790 0.96229 1.86921 1.79517 1.31225 1.07333 1.23666 1.02194 0.92445 1.02432 1.18902 0.97555 0.97749 0.85919 1.21151 1.37441 1.01728 0.95673 0.92432 1.25013 0.95074 0.96946 0.97248 1.69986 1.40200 1.34129 1.08646 0.86474 0.78346 0.83487 0.79321 1.19703 1.20888 1.20914 1.22836 0.94916 1.02434 0.98856 1.23026 1.04667 0.92429 1.01474 1.22947 0.93179 1.01444 1.03473 0.91376 0.92133 0.91433 0.93308 0.93823 0.89466 0.89823 0.91591 0.91444 0.95494 0.95612 0.92870 0.87029 0.88826 0.88736 0.88517 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.69 6.53 37.16 0.24 0.93 16 3 O -0.37 -5.25 9.74 -35.23 -0.34 -5.59 16 4 C 0.14 1.84 2.30 -26.73 -0.06 1.78 16 5 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 6 C -0.09 -1.30 5.58 37.16 0.21 -1.09 16 7 S -0.28 -5.39 21.52 -107.50 -2.31 -7.70 16 8 C -0.06 -1.29 5.88 37.16 0.22 -1.07 16 9 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 C -0.17 -1.79 5.43 -90.62 -0.49 -2.28 16 19 C -0.18 -1.55 10.18 -26.70 -0.27 -1.82 16 20 C -0.17 -1.56 9.76 -26.70 -0.26 -1.82 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.58 7.98 -51.92 -0.41 0.16 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 1.17 7.56 -51.92 -0.39 0.78 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.90 7.96 -51.93 -0.41 0.48 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -30.63 323.72 -9.29 -39.92 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.64 Total: -2.63 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.59 Total: -19.24 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.34 Total: -5.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -2.31 Total: -7.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.63 -9.29 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600637357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.926 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds