Wall clock time and date at job start Mon Mar 30 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47554 * 2 1 4 4 C 1.42900 * 114.00147 * 175.08970 * 3 2 1 5 5 H 1.08997 * 109.47191 * 333.67182 * 4 3 2 6 6 C 1.53007 * 109.46572 * 213.67717 * 4 3 2 7 7 S 1.81394 * 109.47207 * 65.00237 * 6 4 3 8 8 C 1.81399 * 102.99884 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.47342 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47293 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99888 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99997 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47444 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47328 * 119.99810 * 14 12 10 17 17 H 1.48504 * 109.47263 * 239.99993 * 14 12 10 18 18 C 1.52998 * 109.47438 * 93.67813 * 4 3 2 19 19 C 1.52998 * 117.49670 * 254.58617 * 18 4 3 20 20 C 1.53000 * 117.50069 * 185.92824 * 18 4 3 21 21 H 1.08997 * 109.46889 * 300.00797 * 1 2 3 22 22 H 1.08999 * 109.46566 * 59.99857 * 1 2 3 23 23 H 1.08994 * 109.47417 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46985 * 119.99674 * 2 1 3 25 25 H 1.09000 * 109.47389 * 239.99750 * 2 1 3 26 26 H 1.09008 * 109.46501 * 185.00263 * 6 4 3 27 27 H 1.08997 * 109.47167 * 304.99695 * 6 4 3 28 28 H 1.09003 * 109.46825 * 299.99236 * 8 7 6 29 29 H 1.08994 * 109.47919 * 59.99587 * 8 7 6 30 30 H 1.09004 * 109.46864 * 299.99950 * 9 8 7 31 31 H 1.08999 * 109.47071 * 59.99752 * 9 8 7 32 32 H 0.97001 * 119.99829 * 180.02562 * 13 12 10 33 33 H 1.09003 * 115.55005 * 40.25599 * 18 4 3 34 34 H 1.08998 * 117.49920 * 359.97438 * 19 18 4 35 35 H 1.09002 * 117.49747 * 145.01846 * 19 18 4 36 36 H 1.09003 * 117.49630 * 214.98476 * 20 18 4 37 37 H 1.09001 * 117.49438 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4616 0.1117 5 1 3.8221 0.5860 0.6263 6 6 3.7755 2.7214 0.9068 7 16 3.1726 2.5487 2.6089 8 6 3.6717 4.1132 3.3793 9 6 3.2278 4.1252 4.8435 10 6 3.6430 5.4247 5.4837 11 1 4.1711 6.1676 4.9043 12 6 3.3496 5.6648 6.8094 13 7 2.7070 4.7600 7.5149 14 14 3.8649 7.2753 7.6031 15 1 4.5690 8.1173 6.6028 16 1 2.6610 7.9924 8.0947 17 1 4.7749 6.9965 8.7430 18 6 4.0423 1.5536 -1.2858 19 6 4.7635 0.3156 -1.8228 20 6 5.5689 1.5423 -1.3872 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.8571 2.8568 0.9164 27 1 3.3051 3.5872 0.4408 28 1 4.7558 4.2143 3.3272 29 1 3.2036 4.9440 2.8514 30 1 2.1437 4.0243 4.8953 31 1 3.6956 3.2945 5.3718 32 1 2.5002 4.9291 8.4475 33 1 3.4949 2.1671 -2.0014 34 1 4.7995 -0.5641 -1.1802 35 1 4.6908 0.1150 -2.8917 36 1 6.0258 2.1482 -2.1697 37 1 6.1344 1.4698 -0.4582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600637357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:38 Heat of formation + Delta-G solvation = -62.246595 kcal Electronic energy + Delta-G solvation = -15226.135172 eV Core-core repulsion = 12708.218768 eV Total energy + Delta-G solvation = -2517.916405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92671 -37.34787 -35.78196 -33.03185 -32.91026 -30.83430 -27.37785 -25.27004 -23.72336 -23.25287 -23.00603 -21.32831 -18.68089 -18.20900 -17.23800 -16.79321 -16.50094 -15.87816 -15.63195 -15.37917 -15.26234 -14.67818 -14.34529 -13.92525 -13.52203 -13.27062 -13.12637 -12.93238 -12.89375 -12.47793 -12.39442 -12.20948 -12.10084 -12.00973 -11.71517 -11.36043 -11.28176 -11.00480 -10.79542 -10.61978 -10.42412 -8.59490 -8.23657 -6.37465 0.76375 1.40959 1.41555 1.55154 1.78279 2.40354 2.60860 2.83468 3.09580 3.77231 3.83100 3.95794 4.03912 4.20656 4.24352 4.25040 4.31703 4.37133 4.38497 4.51070 4.51455 4.76665 4.81060 4.86469 4.89592 4.99984 5.06069 5.19271 5.24107 5.29734 5.37134 5.48594 5.73118 6.10457 6.30042 6.76868 7.32145 8.88545 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.004261 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.843682 B = 6570.049134 C = 7233.992649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.391 6.391 4 C 0.144 3.856 5 H 0.066 0.934 6 C -0.071 4.071 7 S -0.311 6.311 8 C -0.049 4.049 9 C 0.045 3.955 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.973 3.027 15 H -0.259 1.259 16 H -0.277 1.277 17 H -0.276 1.276 18 C -0.181 4.181 19 C -0.167 4.167 20 C -0.169 4.169 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.072 0.928 30 H -0.006 1.006 31 H -0.003 1.003 32 H 0.266 0.734 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -8.911 -19.761 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.311 6.311 4 C 0.085 3.915 5 H 0.084 0.916 6 C -0.219 4.219 7 S -0.083 6.083 8 C -0.197 4.197 9 C 0.006 3.994 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.797 3.203 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.201 4.201 19 C -0.204 4.204 20 C -0.206 4.206 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.251 -9.646 -19.157 21.566 hybrid contribution 0.712 1.476 0.376 1.682 sum 2.962 -8.170 -18.781 20.694 Atomic orbital electron populations 1.21747 0.93171 1.03229 1.02422 1.22638 0.96215 0.82999 1.00308 1.87946 1.20870 1.27852 1.94423 1.21226 0.81745 0.95665 0.92859 0.91574 1.23536 1.04010 1.02122 0.92280 1.87000 1.80205 1.29631 1.11466 1.23310 1.02707 0.94103 0.99545 1.18676 0.95158 0.96399 0.89131 1.21582 1.37655 1.02538 0.96428 0.91475 1.26040 0.94778 1.00981 0.97910 1.70127 1.41315 1.36554 1.09178 0.85276 0.78140 0.78508 0.78361 1.18264 1.20294 1.20188 1.22656 0.95824 1.04439 0.97152 1.23121 1.02918 0.91922 1.02415 1.23044 0.91949 1.01770 1.03875 0.93434 0.91759 0.89067 0.94009 0.91745 0.87647 0.89783 0.90453 0.90961 0.98741 0.98487 0.92544 0.87079 0.88564 0.87137 0.87115 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 10.28 71.98 0.74 -2.24 16 2 C 0.05 1.22 6.53 71.98 0.47 1.69 16 3 O -0.39 -10.92 9.74 -148.98 -1.45 -12.37 16 4 C 0.14 3.55 2.30 30.60 0.07 3.62 16 5 H 0.07 1.64 7.48 -2.39 -0.02 1.62 16 6 C -0.07 -2.04 5.58 71.98 0.40 -1.64 16 7 S -0.31 -12.18 21.52 -56.49 -1.22 -13.40 16 8 C -0.05 -2.14 5.88 71.98 0.42 -1.72 16 9 C 0.04 2.48 4.98 29.85 0.15 2.63 16 10 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 11 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 12 C 0.00 0.07 5.46 84.66 0.46 0.54 16 13 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 14 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 15 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 C -0.18 -3.38 5.43 -10.79 -0.06 -3.44 16 19 C -0.17 -2.41 10.18 30.62 0.31 -2.09 16 20 C -0.17 -2.59 9.76 30.62 0.30 -2.29 16 21 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 0.97 7.98 -2.38 -0.02 0.95 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 2.63 7.56 -2.39 -0.02 2.61 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 30 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.52 7.96 -2.39 -0.02 1.50 16 Total: -1.00 -66.84 323.72 4.15 -62.69 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.00 Total: 10.21 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 3.50 Total: -36.03 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.28 Total: -57.43 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.45 Total: -12.37 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -12.18 SS G_CDS: -1.22 Total: -13.40 kcal Total: -66.84 4.15 -62.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600637357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.442 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds