Wall clock time and date at job start Mon Mar 30 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47231 * 2 1 4 4 C 1.42900 * 113.99681 * 178.01330 * 3 2 1 5 5 H 1.08996 * 109.47317 * 3.54884 * 4 3 2 6 6 C 1.53006 * 109.46806 * 123.54843 * 4 3 2 7 7 S 1.81400 * 109.46903 * 299.99537 * 6 4 3 8 8 C 1.81402 * 102.99772 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47299 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99809 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99661 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00396 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47203 * 89.99797 * 14 12 10 16 16 H 1.48501 * 109.47082 * 210.00218 * 14 12 10 17 17 H 1.48498 * 109.46818 * 329.99819 * 14 12 10 18 18 C 1.52997 * 109.46933 * 243.54324 * 4 3 2 19 19 C 1.53002 * 117.49871 * 128.64352 * 18 4 3 20 20 C 1.52998 * 117.49952 * 59.98475 * 18 4 3 21 21 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47419 * 300.00118 * 1 2 3 23 23 H 1.09005 * 109.46725 * 60.00256 * 1 2 3 24 24 H 1.09000 * 109.47419 * 239.99882 * 2 1 3 25 25 H 1.09005 * 109.46725 * 119.99744 * 2 1 3 26 26 H 1.09001 * 109.47084 * 59.99464 * 6 4 3 27 27 H 1.08996 * 109.47109 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47382 * 300.00240 * 8 7 6 29 29 H 1.09002 * 109.47068 * 60.00024 * 8 7 6 30 30 H 1.09000 * 109.47177 * 300.00330 * 9 8 7 31 31 H 1.09002 * 109.47176 * 60.00055 * 9 8 7 32 32 H 0.97002 * 120.00169 * 180.02562 * 13 12 10 33 33 H 1.08998 * 115.55350 * 274.31471 * 18 4 3 34 34 H 1.09000 * 117.49563 * 359.97438 * 19 18 4 35 35 H 1.08994 * 117.50053 * 145.02252 * 19 18 4 36 36 H 1.08995 * 117.50323 * 214.97774 * 20 18 4 37 37 H 1.09004 * 117.49743 * 359.97416 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4301 1.4603 0.0453 5 1 3.8749 0.4659 0.0077 6 6 3.9148 2.2814 -1.1514 7 16 3.4224 1.4564 -2.6900 8 6 4.0744 2.5615 -3.9723 9 6 3.7356 1.9964 -5.3531 10 6 4.2778 2.9141 -6.4184 11 1 4.8105 3.8110 -6.1385 12 6 4.0931 2.6093 -7.7503 13 7 3.4440 1.5174 -8.0911 14 14 4.7658 3.7465 -9.0708 15 1 6.1474 3.3323 -9.4239 16 1 3.9026 3.6700 -10.2767 17 1 4.7821 5.1413 -8.5615 18 6 3.8455 2.1562 1.3430 19 6 4.9108 1.4718 2.2019 20 6 3.4506 1.4870 2.6610 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8901 26 1 3.4699 3.2758 -1.1138 27 1 5.0008 2.3680 -1.1167 28 1 3.6252 3.5487 -3.8640 29 1 5.1564 2.6412 -3.8674 30 1 4.1844 1.0090 -5.4617 31 1 2.6535 1.9170 -5.4577 32 1 3.3144 1.3028 -9.0281 33 1 3.8473 3.2457 1.3125 34 1 5.3154 0.5256 1.8426 35 1 5.6131 2.1110 2.7367 36 1 3.1930 2.1363 3.4977 37 1 2.8945 0.5513 2.6036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600637359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:40 Heat of formation + Delta-G solvation = -44.884208 kcal Electronic energy + Delta-G solvation = -15269.398968 eV Core-core repulsion = 12752.235453 eV Total energy + Delta-G solvation = -2517.163515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99141 -36.36173 -33.64982 -32.10927 -30.82556 -29.88130 -25.31832 -24.00416 -22.75220 -22.55055 -21.12415 -20.50180 -16.98062 -16.49380 -16.09144 -15.77607 -15.03701 -14.50549 -14.44199 -13.96306 -13.74611 -13.21445 -12.99192 -12.70186 -12.19279 -11.94448 -11.81710 -11.60262 -11.44680 -11.25755 -11.08962 -10.99845 -10.64233 -10.47479 -10.31360 -10.15536 -9.69218 -9.44694 -9.36686 -8.98811 -8.40017 -7.03087 -6.03954 -4.08326 2.23230 3.30317 3.30896 3.35640 3.37028 3.40415 3.91853 4.43438 4.53332 4.66634 4.82314 4.89023 5.09708 5.22593 5.27831 5.31570 5.38715 5.42004 5.45729 5.48439 5.66686 5.79287 5.87597 5.90216 5.99816 6.01881 6.04526 6.18409 6.23583 6.77481 7.29619 7.59501 7.68954 7.92787 8.30299 8.96690 9.55385 11.06927 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.004213 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.703053 B = 6645.155694 C = 7237.639912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.140 3.860 5 H 0.069 0.931 6 C -0.096 4.096 7 S -0.280 6.280 8 C -0.059 4.059 9 C 0.038 3.962 10 C -0.521 4.521 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.160 4.160 19 C -0.176 4.176 20 C -0.168 4.168 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -1.637 20.049 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.286 6.286 4 C 0.081 3.919 5 H 0.088 0.912 6 C -0.245 4.245 7 S -0.052 6.052 8 C -0.207 4.207 9 C -0.001 4.001 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.180 4.180 19 C -0.214 4.214 20 C -0.205 4.205 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.230 -2.531 19.769 19.968 hybrid contribution 1.228 1.566 -0.650 2.094 sum -0.002 -0.964 19.119 19.143 Atomic orbital electron populations 1.21714 0.93851 1.01964 1.03109 1.22548 0.95626 0.83907 0.99719 1.87954 1.19743 1.26264 1.94614 1.21214 0.82287 0.97721 0.90651 0.91249 1.23634 1.03075 1.02544 0.95243 1.86831 1.78112 1.39641 1.00585 1.23668 1.01309 0.98666 0.97027 1.18894 0.97925 0.96722 0.86529 1.21111 1.36278 1.08064 0.90634 0.92493 1.25009 0.95154 0.95381 0.98701 1.69975 1.41012 1.24610 1.17374 0.86524 0.78847 0.81053 0.81176 1.20570 1.21096 1.19819 1.22611 1.04104 0.99774 0.91536 1.23045 0.92141 1.02593 1.03574 1.22832 0.97504 1.02766 0.97417 0.91408 0.92295 0.91375 0.92688 0.94257 0.89933 0.89655 0.91456 0.91587 0.95628 0.95511 0.92807 0.87271 0.88672 0.88507 0.88714 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.72 6.35 37.16 0.24 0.96 16 3 O -0.37 -5.25 9.48 -35.23 -0.33 -5.58 16 4 C 0.14 1.81 2.49 -26.73 -0.07 1.75 16 5 H 0.07 0.88 7.36 -51.93 -0.38 0.50 16 6 C -0.10 -1.43 5.65 37.16 0.21 -1.22 16 7 S -0.28 -5.36 21.38 -107.50 -2.30 -7.66 16 8 C -0.06 -1.28 5.88 37.16 0.22 -1.06 16 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.16 -1.70 5.39 -90.62 -0.49 -2.19 16 19 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 20 C -0.17 -1.53 10.16 -26.70 -0.27 -1.80 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.41 7.59 -51.93 -0.39 0.02 16 26 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 29 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.11 1.14 8.11 -51.93 -0.42 0.72 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.85 7.59 -51.93 -0.39 0.45 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -30.49 323.39 -9.27 -39.76 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.62 Total: -2.50 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.60 Total: -19.27 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.33 Total: -5.58 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.30 Total: -7.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.49 -9.27 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600637359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.125 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds