Wall clock time and date at job start Mon Mar 30 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47231 * 2 1 4 4 C 1.42900 * 113.99681 * 178.01330 * 3 2 1 5 5 H 1.08996 * 109.47317 * 3.54884 * 4 3 2 6 6 C 1.53006 * 109.46806 * 123.54843 * 4 3 2 7 7 S 1.81400 * 109.46903 * 299.99537 * 6 4 3 8 8 C 1.81402 * 102.99772 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47299 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99809 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99661 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00396 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47203 * 89.99797 * 14 12 10 16 16 H 1.48501 * 109.47082 * 210.00218 * 14 12 10 17 17 H 1.48498 * 109.46818 * 329.99819 * 14 12 10 18 18 C 1.52997 * 109.46933 * 243.54324 * 4 3 2 19 19 C 1.53002 * 117.49871 * 128.64352 * 18 4 3 20 20 C 1.52998 * 117.49952 * 59.98475 * 18 4 3 21 21 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47419 * 300.00118 * 1 2 3 23 23 H 1.09005 * 109.46725 * 60.00256 * 1 2 3 24 24 H 1.09000 * 109.47419 * 239.99882 * 2 1 3 25 25 H 1.09005 * 109.46725 * 119.99744 * 2 1 3 26 26 H 1.09001 * 109.47084 * 59.99464 * 6 4 3 27 27 H 1.08996 * 109.47109 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47382 * 300.00240 * 8 7 6 29 29 H 1.09002 * 109.47068 * 60.00024 * 8 7 6 30 30 H 1.09000 * 109.47177 * 300.00330 * 9 8 7 31 31 H 1.09002 * 109.47176 * 60.00055 * 9 8 7 32 32 H 0.97002 * 120.00169 * 180.02562 * 13 12 10 33 33 H 1.08998 * 115.55350 * 274.31471 * 18 4 3 34 34 H 1.09000 * 117.49563 * 359.97438 * 19 18 4 35 35 H 1.08994 * 117.50053 * 145.02252 * 19 18 4 36 36 H 1.08995 * 117.50323 * 214.97774 * 20 18 4 37 37 H 1.09004 * 117.49743 * 359.97416 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4301 1.4603 0.0453 5 1 3.8749 0.4659 0.0077 6 6 3.9148 2.2814 -1.1514 7 16 3.4224 1.4564 -2.6900 8 6 4.0744 2.5615 -3.9723 9 6 3.7356 1.9964 -5.3531 10 6 4.2778 2.9141 -6.4184 11 1 4.8105 3.8110 -6.1385 12 6 4.0931 2.6093 -7.7503 13 7 3.4440 1.5174 -8.0911 14 14 4.7658 3.7465 -9.0708 15 1 6.1474 3.3323 -9.4239 16 1 3.9026 3.6700 -10.2767 17 1 4.7821 5.1413 -8.5615 18 6 3.8455 2.1562 1.3430 19 6 4.9108 1.4718 2.2019 20 6 3.4506 1.4870 2.6610 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8901 26 1 3.4699 3.2758 -1.1138 27 1 5.0008 2.3680 -1.1167 28 1 3.6252 3.5487 -3.8640 29 1 5.1564 2.6412 -3.8674 30 1 4.1844 1.0090 -5.4617 31 1 2.6535 1.9170 -5.4577 32 1 3.3144 1.3028 -9.0281 33 1 3.8473 3.2457 1.3125 34 1 5.3154 0.5256 1.8426 35 1 5.6131 2.1110 2.7367 36 1 3.1930 2.1363 3.4977 37 1 2.8945 0.5513 2.6036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600637359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:40 Heat of formation + Delta-G solvation = -61.093273 kcal Electronic energy + Delta-G solvation = -15270.101846 eV Core-core repulsion = 12752.235453 eV Total energy + Delta-G solvation = -2517.866393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93031 -37.20988 -35.78547 -33.10194 -32.91133 -30.92288 -27.37927 -25.12506 -23.71460 -23.23435 -23.00422 -21.47321 -18.68390 -17.96071 -17.15673 -17.06067 -16.51614 -15.89955 -15.65834 -15.60258 -14.87628 -14.63523 -14.40758 -13.89764 -13.55973 -13.42627 -13.14172 -12.91031 -12.63137 -12.46632 -12.32879 -12.21779 -12.20038 -12.02551 -11.72696 -11.38326 -11.24419 -11.02599 -10.80962 -10.61596 -10.39586 -8.59434 -8.23932 -6.37884 0.76112 1.40554 1.42439 1.53746 1.77908 2.40040 2.49519 3.08241 3.09205 3.65120 3.85231 3.93647 4.08481 4.18841 4.24130 4.27044 4.34050 4.36397 4.39326 4.48023 4.50777 4.78968 4.80853 4.85945 4.90929 5.02524 5.07765 5.21382 5.25199 5.29277 5.36353 5.48085 5.72511 6.10028 6.30004 6.76173 7.31721 8.88029 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.004213 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.703053 B = 6645.155694 C = 7237.639912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.387 6.387 4 C 0.142 3.858 5 H 0.070 0.930 6 C -0.082 4.082 7 S -0.308 6.308 8 C -0.049 4.049 9 C 0.045 3.955 10 C -0.544 4.544 11 H 0.067 0.933 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.261 1.261 18 C -0.175 4.175 19 C -0.164 4.164 20 C -0.163 4.163 21 H 0.087 0.913 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.076 0.924 30 H -0.003 1.003 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 -0.673 21.521 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.306 6.306 4 C 0.083 3.917 5 H 0.088 0.912 6 C -0.230 4.230 7 S -0.080 6.080 8 C -0.197 4.197 9 C 0.007 3.993 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.185 1.185 18 C -0.195 4.195 19 C -0.201 4.201 20 C -0.201 4.201 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.249 -1.563 21.249 21.308 hybrid contribution 0.892 1.211 -1.011 1.812 sum 0.643 -0.353 20.238 20.252 Atomic orbital electron populations 1.21723 0.92928 1.03146 1.02542 1.22659 0.96459 0.83207 0.99821 1.87934 1.20554 1.27401 1.94728 1.21261 0.81795 0.97722 0.90928 0.91161 1.23779 1.04209 1.02302 0.92697 1.86914 1.78395 1.39974 1.02763 1.23313 1.02030 0.98898 0.95485 1.18665 0.95424 0.95483 0.89714 1.21554 1.36524 1.08662 0.91615 0.91516 1.26036 0.95195 0.97005 1.01429 1.70118 1.42252 1.26622 1.18147 0.85328 0.78290 0.79070 0.77638 1.19509 1.20658 1.18500 1.22498 1.06317 0.99790 0.90868 1.23144 0.92127 1.02582 1.02256 1.22917 0.97877 1.02649 0.96617 0.89412 0.91362 0.93344 0.94602 0.92039 0.89794 0.87890 0.91015 0.90528 0.98504 0.98731 0.92529 0.87094 0.88399 0.86944 0.87472 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 10.28 71.98 0.74 -2.32 16 2 C 0.05 1.31 6.35 71.98 0.46 1.77 16 3 O -0.39 -10.75 9.48 -148.98 -1.41 -12.16 16 4 C 0.14 3.47 2.49 30.60 0.08 3.55 16 5 H 0.07 1.69 7.36 -2.39 -0.02 1.67 16 6 C -0.08 -2.31 5.65 71.98 0.41 -1.91 16 7 S -0.31 -11.95 21.38 -56.49 -1.21 -13.16 16 8 C -0.05 -2.16 5.88 71.98 0.42 -1.74 16 9 C 0.05 2.52 4.98 29.85 0.15 2.67 16 10 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 11 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 12 C 0.00 0.10 5.46 84.65 0.46 0.57 16 13 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 14 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 C -0.17 -3.31 5.39 -10.79 -0.06 -3.37 16 19 C -0.16 -2.39 10.18 30.62 0.31 -2.07 16 20 C -0.16 -2.54 10.16 30.62 0.31 -2.23 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.18 7.59 -2.38 -0.02 1.16 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 34 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.45 7.59 -2.39 -0.02 1.43 16 Total: -1.00 -66.47 323.39 4.20 -62.27 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.00 Total: 10.37 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.51 Total: -36.26 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.41 Total: -12.16 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -11.95 SS G_CDS: -1.21 Total: -13.16 kcal Total: -66.47 4.20 -62.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600637359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.174 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds