Wall clock time and date at job start Mon Mar 30 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86295 * 109.47266 * 2 1 4 4 C 1.86307 * 109.46985 * 240.00109 * 2 1 3 5 5 O 1.63100 * 109.47160 * 120.00386 * 2 1 3 6 6 C 1.42899 * 114.00195 * 60.00017 * 5 2 1 7 7 C 1.50697 * 109.47196 * 270.00081 * 6 5 2 8 8 N 1.27940 * 120.00604 * 114.99852 * 7 6 5 9 9 Si 1.86808 * 119.99672 * 295.00140 * 7 6 5 10 10 H 1.48501 * 109.47305 * 359.97438 * 9 7 6 11 11 H 1.48499 * 109.47034 * 119.99959 * 9 7 6 12 12 H 1.48507 * 109.46734 * 239.99539 * 9 7 6 13 13 C 1.53002 * 109.47266 * 149.99809 * 6 5 2 14 14 H 1.08998 * 109.48768 * 60.03104 * 13 6 5 15 15 C 1.53091 * 109.48142 * 300.00070 * 13 6 5 16 16 C 1.53176 * 109.21206 * 182.43908 * 15 13 6 17 17 C 1.53174 * 109.03724 * 56.94941 * 16 15 13 18 18 C 1.53084 * 109.16456 * 303.01556 * 17 16 15 19 19 O 1.42906 * 109.41372 * 57.61236 * 18 17 16 20 20 H 1.08996 * 109.46720 * 299.99374 * 1 2 3 21 21 H 1.08997 * 109.47041 * 60.00014 * 1 2 3 22 22 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47253 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46984 * 300.00451 * 3 2 1 25 25 H 1.09004 * 109.47134 * 60.00145 * 3 2 1 26 26 H 1.09000 * 109.47120 * 299.99883 * 4 2 1 27 27 H 1.09005 * 109.46731 * 60.00170 * 4 2 1 28 28 H 1.08995 * 109.47276 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47010 * 29.99773 * 6 5 2 30 30 H 0.96999 * 119.99504 * 0.02562 * 8 7 6 31 31 H 1.09002 * 109.52401 * 62.50061 * 15 13 6 32 32 H 1.09004 * 109.52068 * 302.37706 * 15 13 6 33 33 H 1.09004 * 109.53956 * 176.81728 * 16 15 13 34 34 H 1.08995 * 109.54545 * 297.07504 * 16 15 13 35 35 H 1.09007 * 109.52410 * 62.92341 * 17 16 15 36 36 H 1.09000 * 109.52423 * 183.04692 * 17 16 15 37 37 H 1.09004 * 109.48326 * 177.59400 * 18 17 16 38 38 H 1.09000 * 109.48607 * 297.61643 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 8 2.4067 -0.7689 1.3317 6 6 1.9851 -2.1308 1.4293 7 6 0.6768 -2.1995 2.1741 8 7 -0.3798 -2.6023 1.5755 9 14 0.5977 -1.6963 3.9714 10 1 1.9461 -1.2723 4.4265 11 1 -0.3556 -0.5686 4.1282 12 1 0.1397 -2.8489 4.7883 13 6 3.0435 -2.9397 2.1820 14 1 3.1726 -2.5273 3.1826 15 6 4.3726 -2.8701 1.4256 16 6 5.4112 -3.7310 2.1512 17 6 4.8812 -5.1637 2.2646 18 6 3.5333 -5.1449 2.9900 19 8 2.6234 -4.3022 2.2799 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.5740 1.7564 0.0005 24 1 2.1206 2.2702 -0.8900 25 1 2.1207 2.2702 0.8900 26 1 2.1207 -1.9059 -1.5212 27 1 2.1206 -0.3643 -2.4112 28 1 3.5739 -0.8779 -1.5215 29 1 1.8557 -2.5438 0.4289 30 1 -0.3386 -2.8638 0.6423 31 1 4.7174 -1.8367 1.3892 32 1 4.2343 -3.2439 0.4110 33 1 6.3436 -3.7308 1.5865 34 1 5.5872 -3.3273 3.1481 35 1 4.7524 -5.5845 1.2673 36 1 5.5903 -5.7709 2.8273 37 1 3.1310 -6.1570 3.0359 38 1 3.6699 -4.7619 4.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695023544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:22 Heat of formation + Delta-G solvation = -108.233924 kcal Electronic energy + Delta-G solvation = -17436.806163 eV Core-core repulsion = 14823.693435 eV Total energy + Delta-G solvation = -2613.112728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83067 -38.68347 -35.86425 -34.52687 -32.52844 -29.57965 -28.66015 -28.43368 -28.04611 -25.33674 -23.60723 -22.00643 -21.13803 -18.57892 -17.51287 -17.35822 -16.54093 -15.87975 -15.86019 -15.43422 -14.92459 -14.37641 -14.32498 -14.04490 -13.88980 -13.74429 -13.59178 -13.31646 -13.25535 -13.13206 -12.93421 -12.85670 -12.72895 -12.35199 -12.07709 -11.97350 -11.87909 -11.60194 -11.39691 -11.12325 -10.75035 -10.70237 -10.47159 -9.93014 0.63927 1.18502 1.36920 1.60397 1.83223 1.86674 1.91813 2.01174 2.33885 2.92496 3.47674 3.69448 3.84820 3.97072 4.00180 4.17064 4.26183 4.34301 4.55383 4.60241 4.65788 4.69999 4.71974 4.72957 4.73582 4.79734 4.80422 4.88720 4.91877 5.05351 5.11988 5.19423 5.24901 5.39090 5.46884 5.53986 5.61268 6.21962 6.77045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.526 4.526 2 Si 1.286 2.714 3 C -0.470 4.470 4 C -0.515 4.515 5 O -0.612 6.612 6 C 0.104 3.896 7 C -0.047 4.047 8 N -0.624 5.624 9 Si 1.063 2.937 10 H -0.225 1.225 11 H -0.254 1.254 12 H -0.257 1.257 13 C 0.083 3.917 14 H 0.081 0.919 15 C -0.147 4.147 16 C -0.125 4.125 17 C -0.157 4.157 18 C 0.054 3.946 19 O -0.395 6.395 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.328 0.672 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 0.451 0.313 3.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 Si 1.422 2.578 3 C -0.577 4.577 4 C -0.617 4.617 5 O -0.569 6.569 6 C 0.044 3.956 7 C -0.292 4.292 8 N -0.240 5.240 9 Si 0.876 3.124 10 H -0.147 1.147 11 H -0.178 1.178 12 H -0.181 1.181 13 C 0.024 3.976 14 H 0.099 0.901 15 C -0.185 4.185 16 C -0.163 4.163 17 C -0.194 4.194 18 C -0.022 4.022 19 O -0.315 6.315 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.684 0.475 1.554 3.138 hybrid contribution 0.541 -0.238 -2.021 2.106 sum 3.225 0.237 -0.467 3.267 Atomic orbital electron populations 1.27368 1.26195 1.04234 1.04825 0.76734 0.62142 0.64379 0.54587 1.26317 1.07194 1.18885 1.05306 1.27044 1.07229 1.08522 1.18881 1.85318 1.78867 1.25331 1.67387 1.21629 0.92757 0.81981 0.99188 1.32336 0.91062 0.93836 1.11975 1.69426 1.31089 1.07111 1.16329 0.83614 0.81587 0.79690 0.67484 1.14740 1.17774 1.18063 1.22154 0.93179 0.82316 0.99922 0.90117 1.22153 0.94498 1.02242 0.99606 1.21634 0.98476 0.94729 1.01438 1.22195 0.97558 0.97827 1.01839 1.22797 0.89584 0.94998 0.94779 1.87829 1.47180 1.19031 1.77469 0.91342 0.90352 0.92148 0.90335 0.89811 0.90616 0.91842 0.90329 0.90556 0.90273 0.85255 0.88982 0.91512 0.90674 0.90997 0.91717 0.89522 0.87851 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -0.20 8.04 113.37 0.91 0.71 16 2 Si 1.29 -3.81 12.68 68.60 0.87 -2.94 16 3 C -0.47 1.37 8.65 113.37 0.98 2.35 16 4 C -0.52 1.17 8.56 113.37 0.97 2.14 16 5 O -0.61 0.26 7.29 -148.98 -1.09 -0.83 16 6 C 0.10 0.12 1.62 29.85 0.05 0.17 16 7 C -0.05 -0.17 3.62 88.67 0.32 0.16 16 8 N -0.62 -3.29 12.06 24.11 0.29 -3.00 16 9 Si 1.06 2.71 28.09 68.60 1.93 4.63 16 10 H -0.23 0.09 6.70 99.48 0.67 0.76 16 11 H -0.25 -0.89 7.11 99.48 0.71 -0.18 16 12 H -0.26 -1.03 7.11 99.48 0.71 -0.32 16 13 C 0.08 0.08 2.01 30.63 0.06 0.14 16 14 H 0.08 -0.01 6.38 -2.39 -0.02 -0.02 16 15 C -0.15 0.18 5.23 30.68 0.16 0.34 16 16 C -0.13 0.35 6.03 30.71 0.19 0.54 16 17 C -0.16 0.43 6.14 30.68 0.19 0.62 16 18 C 0.05 -0.07 6.84 72.01 0.49 0.42 16 19 O -0.40 -1.23 10.03 -148.98 -1.49 -2.72 16 20 H 0.07 0.12 7.96 -2.39 -0.02 0.10 16 21 H 0.08 -0.06 7.96 -2.39 -0.02 -0.08 16 22 H 0.06 0.10 5.17 -2.39 -0.01 0.09 16 23 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 24 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 25 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 26 H 0.06 -0.10 7.10 -2.39 -0.02 -0.12 16 27 H 0.08 -0.21 7.96 -2.38 -0.02 -0.23 16 28 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.08 -0.04 5.85 -2.39 -0.01 -0.06 16 30 H 0.33 0.91 7.58 -92.71 -0.70 0.21 16 31 H 0.09 -0.23 7.76 -2.39 -0.02 -0.24 16 32 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 33 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 34 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -6.02 300.38 5.86 -0.16 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: 1.03 Total: -2.89 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.32 Total: 7.59 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: 0.29 Total: -3.00 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -2.58 Total: -3.55 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.80 Total: 1.69 kcal Total: -6.02 5.86 -0.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695023544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.078 kcal (2) G-P(sol) polarization free energy of solvation -6.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds