Wall clock time and date at job start Mon Mar 30 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47054 * 2 1 4 4 C 1.86297 * 109.47020 * 240.00599 * 2 1 3 5 5 O 1.63095 * 109.47239 * 120.00423 * 2 1 3 6 6 C 1.42892 * 114.00204 * 59.99596 * 5 2 1 7 7 C 1.50704 * 109.46964 * 90.00198 * 6 5 2 8 8 N 1.27942 * 120.00344 * 250.00094 * 7 6 5 9 9 Si 1.86804 * 119.99919 * 70.00049 * 7 6 5 10 10 H 1.48502 * 109.47006 * 59.99825 * 9 7 6 11 11 H 1.48493 * 109.47145 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46977 * 300.00409 * 9 7 6 13 13 C 1.52998 * 109.47565 * 209.99892 * 6 5 2 14 14 H 1.08999 * 109.49319 * 299.97602 * 13 6 5 15 15 C 1.53098 * 109.47586 * 60.00430 * 13 6 5 16 16 C 1.53177 * 109.21356 * 177.55854 * 15 13 6 17 17 C 1.53180 * 109.03525 * 303.11207 * 16 15 13 18 18 C 1.53097 * 109.21119 * 56.88485 * 17 16 15 19 19 O 1.42898 * 109.41405 * 302.42599 * 18 17 16 20 20 H 1.08997 * 109.47166 * 299.99654 * 1 2 3 21 21 H 1.09002 * 109.46845 * 60.00055 * 1 2 3 22 22 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47297 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47343 * 300.00181 * 3 2 1 25 25 H 1.09007 * 109.46682 * 60.00152 * 3 2 1 26 26 H 1.09010 * 109.46809 * 299.99329 * 4 2 1 27 27 H 1.08998 * 109.47405 * 59.99802 * 4 2 1 28 28 H 1.08999 * 109.47239 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47174 * 330.00378 * 6 5 2 30 30 H 0.97000 * 120.00511 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.52244 * 297.49793 * 15 13 6 32 32 H 1.09004 * 109.52508 * 57.62322 * 15 13 6 33 33 H 1.09005 * 109.54330 * 62.92184 * 16 15 13 34 34 H 1.09005 * 109.54560 * 183.18386 * 16 15 13 35 35 H 1.09002 * 109.46996 * 296.98297 * 17 16 15 36 36 H 1.09005 * 109.58122 * 176.85328 * 17 16 15 37 37 H 1.09007 * 109.47760 * 182.43925 * 18 17 16 38 38 H 1.08997 * 109.48022 * 62.41203 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 8 2.4067 -0.7689 1.3316 6 6 1.9850 -2.1307 1.4293 7 6 2.9969 -3.0196 0.7532 8 7 2.7012 -3.6055 -0.3451 9 14 4.6830 -3.2660 1.5187 10 1 4.5305 -3.8600 2.8712 11 1 5.4858 -4.1777 0.6647 12 1 5.3730 -1.9557 1.6285 13 6 1.8656 -2.5232 2.9032 14 1 2.8340 -2.4075 3.3900 15 6 0.8377 -1.6204 3.5903 16 6 0.6781 -2.0577 5.0496 17 6 0.2736 -3.5347 5.0871 18 6 1.3233 -4.3636 4.3422 19 8 1.4426 -3.8847 3.0012 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.5740 1.7565 0.0005 24 1 2.1206 2.2703 -0.8899 25 1 2.1206 2.2702 0.8901 26 1 2.1207 -1.9058 -1.5212 27 1 2.1206 -0.3642 -2.4111 28 1 3.5740 -0.8785 -1.5210 29 1 1.0166 -2.2470 0.9427 30 1 3.3526 -4.1773 -0.7805 31 1 1.1802 -0.5862 3.5553 32 1 -0.1208 -1.7042 3.0781 33 1 1.6240 -1.9261 5.5752 34 1 -0.0936 -1.4551 5.5286 35 1 -0.6966 -3.6580 4.6058 36 1 0.2119 -3.8704 6.1224 37 1 1.0177 -5.4099 4.3288 38 1 2.2846 -4.2720 4.8478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695023545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:25 Heat of formation + Delta-G solvation = -104.699043 kcal Electronic energy + Delta-G solvation = -17416.470489 eV Core-core repulsion = 14803.511045 eV Total energy + Delta-G solvation = -2612.959444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75056 -38.53967 -35.89033 -34.50335 -32.54666 -29.47863 -28.72466 -28.32189 -28.08927 -25.38116 -23.69618 -21.43954 -20.95025 -18.78011 -17.49333 -16.91181 -16.47518 -16.25021 -15.84049 -15.36769 -14.85386 -14.60429 -14.29919 -14.18410 -13.87233 -13.72420 -13.60561 -13.20565 -13.19983 -13.13774 -13.00208 -12.82578 -12.53061 -12.24698 -12.10143 -12.01948 -11.82766 -11.61726 -11.38180 -11.04674 -10.66303 -10.43029 -10.42357 -9.85454 0.61306 1.03048 1.33511 1.39272 1.74369 1.83433 1.97501 2.10358 2.45700 2.98206 3.31037 3.82059 3.93347 4.01123 4.04390 4.19635 4.27858 4.40653 4.61358 4.69702 4.77486 4.77548 4.79949 4.81922 4.83695 4.84129 4.91090 4.95337 4.96143 5.08494 5.17369 5.23993 5.29799 5.42869 5.57097 5.64410 5.72474 6.25112 6.77939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.514 4.514 2 Si 1.291 2.709 3 C -0.473 4.473 4 C -0.530 4.530 5 O -0.615 6.615 6 C 0.155 3.845 7 C -0.027 4.027 8 N -0.620 5.620 9 Si 0.940 3.060 10 H -0.234 1.234 11 H -0.253 1.253 12 H -0.230 1.230 13 C 0.085 3.915 14 H 0.074 0.926 15 C -0.148 4.148 16 C -0.125 4.125 17 C -0.157 4.157 18 C 0.054 3.946 19 O -0.391 6.391 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.347 0.653 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 0.887 2.651 2.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 Si 1.427 2.573 3 C -0.579 4.579 4 C -0.631 4.631 5 O -0.572 6.572 6 C 0.097 3.903 7 C -0.276 4.276 8 N -0.236 5.236 9 Si 0.756 3.244 10 H -0.157 1.157 11 H -0.176 1.176 12 H -0.152 1.152 13 C 0.026 3.974 14 H 0.092 0.908 15 C -0.185 4.185 16 C -0.163 4.163 17 C -0.194 4.194 18 C -0.022 4.022 19 O -0.311 6.311 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.360 0.639 2.481 2.587 hybrid contribution 0.285 -0.161 -0.426 0.537 sum 0.645 0.478 2.055 2.206 Atomic orbital electron populations 1.27029 1.25247 1.04330 1.04986 0.76661 0.62974 0.63510 0.54190 1.26370 1.06862 1.19393 1.05292 1.27355 1.06211 1.10518 1.19006 1.85310 1.79576 1.24990 1.67336 1.20323 0.95881 0.79515 0.94587 1.30838 1.06435 0.94765 0.95584 1.68055 1.39811 1.06834 1.08939 0.85583 0.74507 0.82497 0.81797 1.15660 1.17630 1.15212 1.22087 0.98496 0.82766 0.94017 0.90772 1.22161 0.99410 1.00723 0.96245 1.21637 1.02562 0.96056 0.96015 1.22199 0.99570 0.95923 1.01743 1.22785 0.98643 0.98860 0.81910 1.87856 1.88787 1.26375 1.28073 0.90582 0.90552 0.91730 0.90914 0.89904 0.90404 0.89903 0.91068 0.91964 0.89258 0.83498 0.88808 0.91140 0.91179 0.90501 0.91494 0.89592 0.87787 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.31 8.56 113.37 0.97 1.28 16 2 Si 1.29 -1.93 12.68 68.60 0.87 -1.06 16 3 C -0.47 0.81 8.65 113.37 0.98 1.79 16 4 C -0.53 -0.91 7.98 113.37 0.90 0.00 16 5 O -0.61 -0.41 7.43 -148.98 -1.11 -1.52 16 6 C 0.16 0.35 1.65 29.85 0.05 0.40 16 7 C -0.03 -0.08 3.78 88.68 0.33 0.25 16 8 N -0.62 -2.30 11.40 24.11 0.27 -2.02 16 9 Si 0.94 1.53 27.39 68.60 1.88 3.41 16 10 H -0.23 -0.38 7.05 99.48 0.70 0.32 16 11 H -0.25 -0.48 7.11 99.48 0.71 0.23 16 12 H -0.23 -0.42 7.11 99.48 0.71 0.28 16 13 C 0.08 0.14 1.90 30.63 0.06 0.20 16 14 H 0.07 0.04 6.47 -2.39 -0.02 0.02 16 15 C -0.15 0.12 5.23 30.69 0.16 0.28 16 16 C -0.13 0.31 6.03 30.71 0.19 0.49 16 17 C -0.16 0.37 6.13 30.69 0.19 0.55 16 18 C 0.05 -0.03 6.84 72.01 0.49 0.46 16 19 O -0.39 -1.47 10.03 -148.98 -1.49 -2.96 16 20 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 21 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 22 H 0.06 0.05 7.10 -2.39 -0.02 0.03 16 23 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 24 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 25 H 0.08 -0.17 7.96 -2.38 -0.02 -0.19 16 26 H 0.08 0.33 5.48 -2.38 -0.01 0.31 16 27 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 28 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 29 H 0.09 0.19 6.12 -2.39 -0.01 0.17 16 30 H 0.35 0.26 8.23 -92.71 -0.76 -0.50 16 31 H 0.09 -0.21 7.76 -2.39 -0.02 -0.23 16 32 H 0.07 -0.02 8.14 -2.38 -0.02 -0.03 16 33 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 34 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 35 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 37 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 38 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -5.70 300.86 5.75 0.06 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.00 Total: -1.50 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 4.33 Total: 5.70 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: 0.27 Total: -2.02 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: -2.60 Total: -4.48 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.75 Total: 2.35 kcal Total: -5.70 5.75 0.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695023545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.754 kcal (2) G-P(sol) polarization free energy of solvation -5.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 0.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds