Wall clock time and date at job start Mon Mar 30 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08992 * 109.47882 * 2 1 4 4 C 1.53002 * 109.47045 * 120.00234 * 2 1 3 5 5 C 1.50707 * 109.46964 * 184.99346 * 4 2 1 6 6 H 1.08000 * 120.00187 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99687 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99869 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47027 * 60.00311 * 9 7 5 11 11 H 1.48499 * 109.47164 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47087 * 300.00276 * 9 7 5 13 13 S 1.81403 * 109.47039 * 239.99872 * 2 1 3 14 14 O 1.42096 * 109.47044 * 298.61817 * 13 2 1 15 15 C 1.81400 * 102.99620 * 55.00090 * 13 2 1 16 16 C 1.53004 * 109.47015 * 179.97438 * 15 13 2 17 17 C 1.54894 * 110.48128 * 68.24548 * 16 15 13 18 18 C 1.55238 * 102.58338 * 156.67574 * 17 16 15 19 19 C 1.54266 * 104.23333 * 322.08174 * 18 17 16 20 20 C 1.53869 * 106.59800 * 23.61579 * 19 18 17 21 21 H 1.09006 * 109.46846 * 300.00006 * 1 2 3 22 22 H 1.08997 * 109.47421 * 59.99415 * 1 2 3 23 23 H 1.09001 * 109.47717 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47129 * 304.99534 * 4 2 1 25 25 H 1.09000 * 109.47003 * 64.99783 * 4 2 1 26 26 H 0.97001 * 119.99480 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47103 * 60.00752 * 15 13 2 28 28 H 1.08991 * 109.47345 * 300.00001 * 15 13 2 29 29 H 1.09002 * 110.43542 * 305.70396 * 16 15 13 30 30 H 1.08996 * 110.75388 * 275.05927 * 17 16 15 31 31 H 1.08993 * 110.76071 * 38.44153 * 17 16 15 32 32 H 1.09005 * 110.46917 * 203.39204 * 18 17 16 33 33 H 1.09007 * 110.58541 * 80.83124 * 18 17 16 34 34 H 1.08999 * 110.03060 * 264.32313 * 19 18 17 35 35 H 1.09006 * 110.06829 * 142.91691 * 19 18 17 36 36 H 1.09001 * 110.02983 * 240.71432 * 20 19 18 37 37 H 1.08995 * 110.03881 * 119.28625 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3126 6 1 4.0789 -0.0857 0.5395 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8371 3.3000 9 14 6.0919 -1.0607 2.4372 10 1 6.4844 0.3703 2.4965 11 1 6.5869 -1.7609 3.6496 12 1 6.6844 -1.6868 1.2280 13 16 2.1346 -0.8552 -1.4811 14 8 1.6875 -2.2039 -1.4650 15 6 1.3147 0.0374 -2.8308 16 6 1.7287 -0.5730 -4.1714 17 6 1.1440 -1.9995 -4.3210 18 6 1.1222 -2.1963 -5.8607 19 6 0.7210 -0.8135 -6.4142 20 6 1.1066 0.2187 -5.3402 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6054 -0.2618 2.1369 25 1 1.7515 -1.7716 1.2055 26 1 4.0607 -2.2439 4.0354 27 1 1.6086 1.0867 -2.8037 28 1 0.2339 -0.0404 -2.7141 29 1 2.8148 -0.5945 -4.2606 30 1 1.7923 -2.7346 -3.8442 31 1 0.1353 -2.0486 -3.9109 32 1 0.3829 -2.9476 -6.1385 33 1 2.1095 -2.4812 -6.2246 34 1 -0.3534 -0.7810 -6.5948 35 1 1.2611 -0.6096 -7.3389 36 1 0.2193 0.7521 -4.9994 37 1 1.8343 0.9230 -5.7433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:56 Heat of formation + Delta-G solvation = -74.949599 kcal Electronic energy + Delta-G solvation = -16055.653348 eV Core-core repulsion = 13537.186100 eV Total energy + Delta-G solvation = -2518.467248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.14419 -34.90305 -34.44215 -32.12807 -31.18080 -28.59720 -27.57093 -24.91787 -23.33053 -20.66911 -20.47835 -19.64572 -16.75988 -16.39074 -16.07845 -15.18606 -14.72532 -14.52033 -14.00919 -13.83267 -13.29636 -13.16084 -12.47833 -12.11320 -11.95476 -11.85365 -11.59248 -11.33288 -11.20404 -11.10554 -10.91132 -10.76892 -10.62893 -10.56973 -10.50994 -10.34276 -10.22510 -9.57150 -9.17384 -8.91954 -8.39775 -7.31556 -6.03887 -4.09481 2.29159 3.33185 3.38285 3.39146 3.49076 4.42531 4.54146 4.66643 4.70474 4.76894 5.23527 5.33094 5.47244 5.52194 5.58816 5.66718 5.68886 5.71702 5.76642 5.82656 5.91594 5.93471 6.00566 6.10403 6.16498 6.34762 6.41285 6.43518 6.53105 6.62162 6.84050 7.58795 7.65904 7.92411 8.28051 8.96653 9.55994 11.07220 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.005794 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.069401 B = 4831.369300 C = 5155.782996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.391 4.391 3 H 0.109 0.891 4 C 0.044 3.956 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.272 1.272 13 S 1.256 4.744 14 O -0.845 6.845 15 C -0.464 4.464 16 C -0.067 4.067 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.117 4.117 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 5.404 -15.850 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.510 4.510 3 H 0.127 0.873 4 C 0.006 3.994 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.197 1.197 13 S 1.454 4.546 14 O -0.840 6.840 15 C -0.599 4.599 16 C -0.087 4.087 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.155 4.155 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.785 4.526 -15.757 16.491 hybrid contribution -1.383 0.094 0.503 1.474 sum -3.167 4.620 -15.254 16.250 Atomic orbital electron populations 1.21867 0.95544 1.01629 1.01203 1.27425 0.99675 1.09428 1.14458 0.87299 1.18865 0.95921 0.95227 0.89388 1.21235 0.91579 1.35471 1.09147 0.91697 1.25032 0.98656 0.94839 0.95528 1.69962 1.35932 1.35007 1.11882 0.86661 0.85352 0.78400 0.77741 1.19934 1.21307 1.19727 1.70786 1.13321 0.85111 0.85386 1.93031 1.80520 1.26173 1.84271 1.28035 1.09566 1.10738 1.11516 1.21541 1.00145 0.94687 0.92292 1.22759 1.01790 0.96724 0.95174 1.22431 1.01169 0.96665 0.96077 1.22138 1.00692 0.95235 0.98206 1.22229 1.00458 0.97653 0.95197 0.92432 0.93797 0.92890 0.95733 0.95869 0.92744 0.87445 0.90339 0.89987 0.90181 0.91804 0.92100 0.91640 0.92327 0.92136 0.91997 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.94 37.15 0.33 -2.31 16 2 C -0.39 -7.73 2.83 -26.73 -0.08 -7.80 16 3 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 4 C 0.04 1.13 4.44 -27.88 -0.12 1.01 16 5 C -0.54 -14.27 8.53 -34.44 -0.29 -14.56 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 13 S 1.26 22.39 11.89 -107.50 -1.28 21.11 16 14 O -0.84 -19.55 16.30 -35.23 -0.57 -20.12 16 15 C -0.46 -6.35 4.66 37.16 0.17 -6.18 16 16 C -0.07 -0.86 2.86 -88.96 -0.25 -1.11 16 17 C -0.13 -1.81 5.27 -24.55 -0.13 -1.94 16 18 C -0.13 -1.43 6.84 -24.88 -0.17 -1.60 16 19 C -0.12 -1.27 6.80 -25.62 -0.17 -1.45 16 20 C -0.12 -1.26 6.37 -25.62 -0.16 -1.42 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.04 0.67 6.51 -51.93 -0.34 0.33 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 27 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.08 1.14 6.82 -51.93 -0.35 0.79 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.29 7.33 -51.93 -0.38 0.91 16 31 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -32.53 305.39 -9.01 -41.54 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.50 Total: -1.24 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: -0.98 Total: -35.73 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.57 Total: -20.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 22.39 SS G_CDS: -1.28 Total: 21.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.53 -9.01 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.408 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds