Wall clock time and date at job start Mon Mar 30 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08992 * 109.47882 * 2 1 4 4 C 1.53002 * 109.47045 * 120.00234 * 2 1 3 5 5 C 1.50707 * 109.46964 * 184.99346 * 4 2 1 6 6 H 1.08000 * 120.00187 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99687 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99869 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47027 * 60.00311 * 9 7 5 11 11 H 1.48499 * 109.47164 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47087 * 300.00276 * 9 7 5 13 13 S 1.81403 * 109.47039 * 239.99872 * 2 1 3 14 14 O 1.42096 * 109.47044 * 298.61817 * 13 2 1 15 15 C 1.81400 * 102.99620 * 55.00090 * 13 2 1 16 16 C 1.53004 * 109.47015 * 179.97438 * 15 13 2 17 17 C 1.54894 * 110.48128 * 68.24548 * 16 15 13 18 18 C 1.55238 * 102.58338 * 156.67574 * 17 16 15 19 19 C 1.54266 * 104.23333 * 322.08174 * 18 17 16 20 20 C 1.53869 * 106.59800 * 23.61579 * 19 18 17 21 21 H 1.09006 * 109.46846 * 300.00006 * 1 2 3 22 22 H 1.08997 * 109.47421 * 59.99415 * 1 2 3 23 23 H 1.09001 * 109.47717 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47129 * 304.99534 * 4 2 1 25 25 H 1.09000 * 109.47003 * 64.99783 * 4 2 1 26 26 H 0.97001 * 119.99480 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47103 * 60.00752 * 15 13 2 28 28 H 1.08991 * 109.47345 * 300.00001 * 15 13 2 29 29 H 1.09002 * 110.43542 * 305.70396 * 16 15 13 30 30 H 1.08996 * 110.75388 * 275.05927 * 17 16 15 31 31 H 1.08993 * 110.76071 * 38.44153 * 17 16 15 32 32 H 1.09005 * 110.46917 * 203.39204 * 18 17 16 33 33 H 1.09007 * 110.58541 * 80.83124 * 18 17 16 34 34 H 1.08999 * 110.03060 * 264.32313 * 19 18 17 35 35 H 1.09006 * 110.06829 * 142.91691 * 19 18 17 36 36 H 1.09001 * 110.02983 * 240.71432 * 20 19 18 37 37 H 1.08995 * 110.03881 * 119.28625 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3126 6 1 4.0789 -0.0857 0.5395 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8371 3.3000 9 14 6.0919 -1.0607 2.4372 10 1 6.4844 0.3703 2.4965 11 1 6.5869 -1.7609 3.6496 12 1 6.6844 -1.6868 1.2280 13 16 2.1346 -0.8552 -1.4811 14 8 1.6875 -2.2039 -1.4650 15 6 1.3147 0.0374 -2.8308 16 6 1.7287 -0.5730 -4.1714 17 6 1.1440 -1.9995 -4.3210 18 6 1.1222 -2.1963 -5.8607 19 6 0.7210 -0.8135 -6.4142 20 6 1.1066 0.2187 -5.3402 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6054 -0.2618 2.1369 25 1 1.7515 -1.7716 1.2055 26 1 4.0607 -2.2439 4.0354 27 1 1.6086 1.0867 -2.8037 28 1 0.2339 -0.0404 -2.7141 29 1 2.8148 -0.5945 -4.2606 30 1 1.7923 -2.7346 -3.8442 31 1 0.1353 -2.0486 -3.9109 32 1 0.3829 -2.9476 -6.1385 33 1 2.1095 -2.4812 -6.2246 34 1 -0.3534 -0.7810 -6.5948 35 1 1.2611 -0.6096 -7.3389 36 1 0.2193 0.7521 -4.9994 37 1 1.8343 0.9230 -5.7433 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:56 Heat of formation + Delta-G solvation = -95.671664 kcal Electronic energy + Delta-G solvation = -16056.551924 eV Core-core repulsion = 13537.186100 eV Total energy + Delta-G solvation = -2519.365824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.09185 -36.59834 -36.25351 -34.06270 -32.24015 -29.52458 -29.46563 -26.01900 -25.24421 -22.37858 -21.42509 -20.64106 -18.49034 -18.23837 -17.22099 -16.59263 -16.35597 -15.86696 -15.24182 -15.10773 -14.75257 -14.25339 -14.10145 -13.68380 -13.62752 -13.42434 -13.24053 -12.80814 -12.57011 -12.46424 -12.31481 -12.09620 -11.97601 -11.86752 -11.63505 -11.48595 -11.45494 -11.19430 -11.15129 -10.59437 -10.35995 -8.83264 -8.15361 -6.28897 0.85456 1.49529 1.54441 1.60517 2.07138 2.48045 3.13685 3.20797 3.70630 3.74405 3.82611 4.09463 4.17651 4.31278 4.41705 4.53402 4.59478 4.62906 4.71148 4.80257 4.84894 4.88357 5.02191 5.07592 5.09694 5.11500 5.14142 5.26250 5.35326 5.44301 5.49838 5.54773 5.57066 5.81372 6.17518 6.88776 7.42754 8.97557 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.005794 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.069401 B = 4831.369300 C = 5155.782996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.393 4.393 3 H 0.143 0.857 4 C 0.048 3.952 5 C -0.543 4.543 6 H 0.098 0.902 7 C -0.006 4.006 8 N -0.943 5.943 9 Si 0.965 3.035 10 H -0.252 1.252 11 H -0.295 1.295 12 H -0.256 1.256 13 S 1.272 4.728 14 O -0.909 6.909 15 C -0.443 4.443 16 C -0.074 4.074 17 C -0.136 4.136 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.112 4.112 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.022 0.978 24 H -0.007 1.007 25 H -0.030 1.030 26 H 0.261 0.739 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 8.190 -18.748 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.511 4.511 3 H 0.160 0.840 4 C 0.010 3.990 5 C -0.581 4.581 6 H 0.115 0.885 7 C -0.204 4.204 8 N -0.583 5.583 9 Si 0.788 3.212 10 H -0.176 1.176 11 H -0.221 1.221 12 H -0.181 1.181 13 S 1.473 4.527 14 O -0.905 6.905 15 C -0.581 4.581 16 C -0.093 4.093 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.150 4.150 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.041 0.959 24 H 0.011 0.989 25 H -0.012 1.012 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.374 7.312 -18.634 20.020 hybrid contribution -1.924 -0.761 1.316 2.452 sum -2.298 6.551 -17.318 18.657 Atomic orbital electron populations 1.21858 0.94696 1.00292 1.03227 1.27384 1.00570 1.10505 1.12642 0.83960 1.18669 0.96367 0.92574 0.91370 1.21829 0.92050 1.34729 1.09487 0.88453 1.26163 1.04541 0.94464 0.95197 1.70158 1.38269 1.36851 1.12997 0.85488 0.78361 0.79483 0.77826 1.17603 1.22095 1.18054 1.69847 1.13831 0.83602 0.85383 1.92959 1.82138 1.29974 1.85394 1.27830 1.08788 1.12096 1.09389 1.21699 1.01442 0.93664 0.92492 1.22758 0.99869 0.97593 0.97202 1.22437 1.01957 0.97997 0.93728 1.22150 1.01215 0.93845 0.98854 1.22217 1.00999 0.97739 0.94086 0.92231 0.89929 0.95924 0.98855 1.01159 0.93014 0.83185 0.90804 0.88162 0.93114 0.94163 0.92088 0.90583 0.92091 0.90075 0.91837 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.94 71.98 0.64 -4.55 16 2 C -0.39 -15.36 2.83 30.59 0.09 -15.27 16 3 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 4 C 0.05 2.58 4.44 29.85 0.13 2.71 16 5 C -0.54 -29.08 8.53 25.60 0.22 -28.86 16 6 H 0.10 4.43 7.60 -2.91 -0.02 4.41 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 10 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 13 S 1.27 44.49 11.89 -56.49 -0.67 43.81 16 14 O -0.91 -43.95 16.30 -148.98 -2.43 -46.38 16 15 C -0.44 -10.67 4.66 71.98 0.34 -10.33 16 16 C -0.07 -1.65 2.86 -9.72 -0.03 -1.67 16 17 C -0.14 -3.84 5.27 32.01 0.17 -3.67 16 18 C -0.12 -2.59 6.84 31.79 0.22 -2.37 16 19 C -0.12 -2.07 6.80 31.32 0.21 -1.85 16 20 C -0.11 -1.91 6.37 31.32 0.20 -1.71 16 21 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 22 H 0.08 2.33 6.51 -2.39 -0.02 2.32 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H -0.03 -1.90 8.08 -2.39 -0.02 -1.92 16 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.15 2.45 8.14 -2.39 -0.02 2.44 16 28 H 0.07 1.93 6.82 -2.40 -0.02 1.91 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.69 7.33 -2.39 -0.02 1.68 16 31 H 0.04 1.28 8.00 -2.39 -0.02 1.26 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 1.09 7.84 -2.39 -0.02 1.07 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.11 305.39 2.87 -73.24 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.01 Total: 10.96 kcal Atomic # 6 Polarization: -70.11 SS G_CDS: 2.65 Total: -67.46 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -2.43 Total: -46.38 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 44.49 SS G_CDS: -0.67 Total: 43.81 kcal Total: -76.11 2.87 -73.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds