Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.52996 * 109.47420 * 120.00720 * 2 1 3 5 5 C 1.50694 * 109.47286 * 184.99685 * 4 2 1 6 6 H 1.07991 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00205 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47095 * 90.00227 * 9 7 5 11 11 H 1.48505 * 109.47089 * 210.00221 * 9 7 5 12 12 H 1.48496 * 109.47051 * 329.99623 * 9 7 5 13 13 S 1.81400 * 109.46774 * 240.00327 * 2 1 3 14 14 O 1.42101 * 109.47073 * 171.38707 * 13 2 1 15 15 C 1.81406 * 103.00138 * 55.00045 * 13 2 1 16 16 C 1.52994 * 109.47142 * 180.02562 * 15 13 2 17 17 C 1.54961 * 110.92578 * 71.54091 * 16 15 13 18 18 C 1.54270 * 104.16191 * 156.29427 * 17 16 15 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47447 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46723 * 299.99615 * 1 2 3 23 23 H 1.09000 * 109.47407 * 59.99470 * 1 2 3 24 24 H 1.09005 * 109.47019 * 305.00233 * 4 2 1 25 25 H 1.09001 * 109.47225 * 64.99428 * 4 2 1 26 26 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46902 * 59.99813 * 15 13 2 28 28 H 1.09000 * 109.47145 * 299.99819 * 15 13 2 29 29 H 1.09001 * 110.67554 * 308.23175 * 16 15 13 30 30 H 1.08997 * 110.47708 * 37.64024 * 17 16 15 31 31 H 1.09002 * 110.53308 * 274.97416 * 17 16 15 32 32 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 33 33 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 34 34 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 35 35 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 36 36 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 37 37 H 1.09000 * 110.48806 * 264.79985 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0789 -0.0863 0.5391 7 6 4.2303 -1.1929 2.3580 8 7 3.5763 -1.8365 3.3002 9 14 6.0920 -1.0606 2.4370 10 1 6.4698 0.1621 3.1905 11 1 6.6446 -2.2558 3.1238 12 1 6.6416 -0.9830 1.0597 13 16 2.1346 -0.8551 -1.4812 14 8 3.5413 -0.6839 -1.5859 15 6 1.3147 0.0376 -2.8310 16 6 1.7276 -0.5735 -4.1714 17 6 1.0798 -1.9676 -4.3670 18 6 1.0617 -2.1640 -5.8971 19 6 1.1029 -0.7586 -6.5222 20 6 1.1440 0.2440 -5.3505 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6054 -0.2620 2.1369 25 1 1.7517 -1.7716 1.2054 26 1 4.0607 -2.2433 4.0356 27 1 1.6085 1.0869 -2.8037 28 1 0.2338 -0.0402 -2.7142 29 1 2.8131 -0.6388 -4.2465 30 1 0.0650 -1.9756 -3.9694 31 1 1.6834 -2.7400 -3.8904 32 1 0.1491 -2.6793 -6.1967 33 1 1.9340 -2.7376 -6.2102 34 1 1.9957 -0.6499 -7.1381 35 1 0.2108 -0.5920 -7.1259 36 1 1.7945 1.0850 -5.5905 37 1 0.1397 0.5953 -5.1135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = -73.408701 kcal Electronic energy + Delta-G solvation = -16016.888636 eV Core-core repulsion = 13498.488206 eV Total energy + Delta-G solvation = -2518.400430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.18287 -34.78996 -34.49165 -32.03739 -31.21147 -28.69782 -27.45941 -25.01125 -23.25553 -20.80592 -20.30405 -19.83399 -16.65087 -16.32801 -15.92036 -15.20708 -14.87929 -14.39633 -14.00681 -13.98540 -13.24893 -13.18757 -12.69913 -12.19710 -11.99106 -11.58894 -11.45397 -11.35643 -11.11752 -11.09734 -10.89914 -10.71552 -10.66582 -10.53647 -10.48546 -10.45793 -10.34288 -9.60697 -9.10143 -8.71604 -8.29505 -7.35965 -5.96605 -3.97748 2.27224 3.38674 3.44073 3.48534 3.56459 4.53610 4.55497 4.58018 4.65376 4.77210 5.27683 5.38549 5.41293 5.45653 5.54568 5.63196 5.65995 5.68745 5.76266 5.82759 5.88637 5.93954 5.98365 6.05513 6.09624 6.20558 6.33134 6.42776 6.48897 6.61682 6.83490 7.60098 7.61985 8.05442 8.39571 9.13189 9.68931 11.14390 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.005852 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.306734 B = 4783.436253 C = 5195.583548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.395 4.395 3 H 0.075 0.925 4 C 0.047 3.953 5 C -0.530 4.530 6 H 0.070 0.930 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.270 1.270 13 S 1.244 4.756 14 O -0.831 6.831 15 C -0.461 4.461 16 C -0.070 4.070 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.117 4.117 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -0.617 -15.664 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.514 4.514 3 H 0.094 0.906 4 C 0.009 3.991 5 C -0.569 4.569 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.194 1.194 13 S 1.441 4.559 14 O -0.826 6.826 15 C -0.595 4.595 16 C -0.089 4.089 17 C -0.165 4.165 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.156 4.156 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.411 -1.461 -15.594 18.272 hybrid contribution 1.594 2.463 0.242 2.944 sum -7.817 1.002 -15.353 17.257 Atomic orbital electron populations 1.21545 0.93496 1.02086 1.01186 1.27379 1.00715 1.08761 1.14550 0.90620 1.18846 0.95904 0.95045 0.89335 1.21569 0.91923 1.34687 1.08707 0.91176 1.24939 0.98415 0.95083 0.95513 1.69962 1.35534 1.36186 1.12075 0.86630 0.86014 0.77376 0.78416 1.20827 1.21148 1.19432 1.70286 0.90405 1.10163 0.84996 1.93118 1.24901 1.81370 1.83248 1.27978 1.10482 1.09679 1.11392 1.21685 1.00150 0.94813 0.92275 1.22573 1.01490 0.96641 0.95844 1.22121 1.01653 0.96790 0.95664 1.22133 1.01349 0.95100 0.97741 1.22432 1.00908 0.97624 0.94592 0.91696 0.92477 0.93572 0.95437 0.95500 0.93046 0.90561 0.87222 0.90462 0.90634 0.90861 0.91870 0.91920 0.92174 0.92127 0.92226 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.94 37.16 0.33 -1.52 16 2 C -0.40 -7.86 2.84 -26.73 -0.08 -7.94 16 3 H 0.08 1.62 8.14 -51.92 -0.42 1.20 16 4 C 0.05 1.19 4.45 -27.89 -0.12 1.06 16 5 C -0.53 -15.67 8.24 -34.44 -0.28 -15.96 16 6 H 0.07 2.18 6.23 -52.49 -0.33 1.85 16 7 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 23.26 29.54 -169.99 -5.02 18.24 16 10 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 13 S 1.24 22.34 12.17 -107.50 -1.31 21.03 16 14 O -0.83 -20.63 16.08 -35.23 -0.57 -21.19 16 15 C -0.46 -6.33 4.81 37.15 0.18 -6.16 16 16 C -0.07 -0.89 2.86 -88.59 -0.25 -1.15 16 17 C -0.13 -1.33 6.00 -25.03 -0.15 -1.48 16 18 C -0.12 -1.16 6.80 -25.61 -0.17 -1.33 16 19 C -0.13 -1.18 6.80 -25.62 -0.17 -1.36 16 20 C -0.12 -1.28 6.27 -25.07 -0.16 -1.43 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.55 6.51 -51.93 -0.34 0.21 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.11 1.20 6.76 -51.92 -0.35 0.85 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -35.24 305.52 -9.01 -44.26 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.48 Total: -4.92 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: -0.98 Total: -35.52 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.57 Total: -21.19 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 16 Polarization: 22.34 SS G_CDS: -1.31 Total: 21.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.24 -9.01 -44.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.154 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds