Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.52996 * 109.47420 * 120.00720 * 2 1 3 5 5 C 1.50694 * 109.47286 * 184.99685 * 4 2 1 6 6 H 1.07991 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00205 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47095 * 90.00227 * 9 7 5 11 11 H 1.48505 * 109.47089 * 210.00221 * 9 7 5 12 12 H 1.48496 * 109.47051 * 329.99623 * 9 7 5 13 13 S 1.81400 * 109.46774 * 240.00327 * 2 1 3 14 14 O 1.42101 * 109.47073 * 171.38707 * 13 2 1 15 15 C 1.81406 * 103.00138 * 55.00045 * 13 2 1 16 16 C 1.52994 * 109.47142 * 180.02562 * 15 13 2 17 17 C 1.54961 * 110.92578 * 71.54091 * 16 15 13 18 18 C 1.54270 * 104.16191 * 156.29427 * 17 16 15 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47447 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46723 * 299.99615 * 1 2 3 23 23 H 1.09000 * 109.47407 * 59.99470 * 1 2 3 24 24 H 1.09005 * 109.47019 * 305.00233 * 4 2 1 25 25 H 1.09001 * 109.47225 * 64.99428 * 4 2 1 26 26 H 0.97001 * 119.99935 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46902 * 59.99813 * 15 13 2 28 28 H 1.09000 * 109.47145 * 299.99819 * 15 13 2 29 29 H 1.09001 * 110.67554 * 308.23175 * 16 15 13 30 30 H 1.08997 * 110.47708 * 37.64024 * 17 16 15 31 31 H 1.09002 * 110.53308 * 274.97416 * 17 16 15 32 32 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 33 33 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 34 34 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 35 35 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 36 36 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 37 37 H 1.09000 * 110.48806 * 264.79985 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0789 -0.0863 0.5391 7 6 4.2303 -1.1929 2.3580 8 7 3.5763 -1.8365 3.3002 9 14 6.0920 -1.0606 2.4370 10 1 6.4698 0.1621 3.1905 11 1 6.6446 -2.2558 3.1238 12 1 6.6416 -0.9830 1.0597 13 16 2.1346 -0.8551 -1.4812 14 8 3.5413 -0.6839 -1.5859 15 6 1.3147 0.0376 -2.8310 16 6 1.7276 -0.5735 -4.1714 17 6 1.0798 -1.9676 -4.3670 18 6 1.0617 -2.1640 -5.8971 19 6 1.1029 -0.7586 -6.5222 20 6 1.1440 0.2440 -5.3505 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6054 -0.2620 2.1369 25 1 1.7517 -1.7716 1.2054 26 1 4.0607 -2.2433 4.0356 27 1 1.6085 1.0869 -2.8037 28 1 0.2338 -0.0402 -2.7142 29 1 2.8131 -0.6388 -4.2465 30 1 0.0650 -1.9756 -3.9694 31 1 1.6834 -2.7400 -3.8904 32 1 0.1491 -2.6793 -6.1967 33 1 1.9340 -2.7376 -6.2102 34 1 1.9957 -0.6499 -7.1381 35 1 0.2108 -0.5920 -7.1259 36 1 1.7945 1.0850 -5.5905 37 1 0.1397 0.5953 -5.1135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = -96.480797 kcal Electronic energy + Delta-G solvation = -16017.889117 eV Core-core repulsion = 13498.488206 eV Total energy + Delta-G solvation = -2519.400911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04141 -36.53660 -36.33853 -34.03856 -32.25430 -29.48075 -29.31256 -26.06608 -25.16506 -22.44875 -21.06017 -20.86633 -18.57291 -18.11316 -17.05727 -16.64716 -16.42822 -15.86686 -15.41097 -15.16079 -14.78484 -14.11472 -14.03899 -13.85417 -13.67405 -13.30513 -13.06689 -12.68401 -12.50268 -12.36424 -12.26278 -12.24944 -12.00890 -11.87232 -11.66278 -11.50326 -11.41874 -11.14994 -11.12612 -10.68075 -10.28129 -8.91615 -8.25323 -6.32013 0.81799 1.27786 1.29555 1.44278 2.05161 2.36701 3.04680 3.18552 3.70969 3.74580 3.91339 4.15358 4.33342 4.40487 4.43045 4.59645 4.68697 4.71657 4.78058 4.87631 4.90993 5.01988 5.07816 5.11414 5.18532 5.20435 5.30949 5.39180 5.41963 5.48619 5.54216 5.59300 5.61105 5.78707 6.19591 6.83793 7.36968 8.85486 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.005852 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.306734 B = 4783.436253 C = 5195.583548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.394 4.394 3 H 0.050 0.950 4 C 0.048 3.952 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.286 1.286 13 S 1.267 4.733 14 O -0.911 6.911 15 C -0.437 4.437 16 C -0.080 4.080 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.115 4.115 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.004 0.996 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -0.830 -17.153 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.513 4.513 3 H 0.069 0.931 4 C 0.010 3.990 5 C -0.587 4.587 6 H 0.064 0.936 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.191 1.191 12 H -0.211 1.211 13 S 1.469 4.531 14 O -0.907 6.907 15 C -0.575 4.575 16 C -0.100 4.100 17 C -0.170 4.170 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.153 4.153 21 H 0.110 0.890 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.023 0.977 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.610 -1.688 -17.033 20.683 hybrid contribution 2.217 2.580 0.600 3.454 sum -9.394 0.892 -16.433 18.949 Atomic orbital electron populations 1.21609 0.89020 1.04485 1.02940 1.27307 1.04542 1.06421 1.13012 0.93075 1.18724 0.93548 0.95453 0.91277 1.21834 0.94364 1.34431 1.08093 0.93580 1.25649 1.02417 0.95017 0.95415 1.70018 1.36962 1.36669 1.12475 0.85812 0.81418 0.78451 0.77618 1.19662 1.19120 1.21125 1.69174 0.88175 1.10557 0.85163 1.93007 1.29226 1.83577 1.84841 1.27757 1.12185 1.08277 1.09284 1.21755 0.98646 0.97201 0.92384 1.22687 1.02586 0.94634 0.97050 1.22143 1.02571 0.96849 0.94659 1.22146 1.02132 0.94668 0.97297 1.22437 1.01397 0.97414 0.94084 0.89008 0.92900 0.89728 0.97743 0.95555 0.92522 0.91442 0.82670 0.93849 0.87901 0.91330 0.89748 0.92423 0.92643 0.90186 0.93136 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.94 71.98 0.64 -2.63 16 2 C -0.39 -15.67 2.84 30.59 0.09 -15.59 16 3 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.05 2.49 4.45 29.84 0.13 2.62 16 5 C -0.55 -33.59 8.24 25.60 0.21 -33.38 16 6 H 0.05 3.00 6.23 -2.92 -0.02 2.99 16 7 C 0.01 0.83 5.46 84.65 0.46 1.30 16 8 N -0.92 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.94 48.70 29.54 68.60 2.03 50.73 16 10 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 13 S 1.27 45.53 12.17 -56.49 -0.69 44.84 16 14 O -0.91 -47.39 16.08 -148.98 -2.40 -49.78 16 15 C -0.44 -10.95 4.81 71.98 0.35 -10.61 16 16 C -0.08 -1.91 2.86 -9.48 -0.03 -1.94 16 17 C -0.13 -2.38 6.00 31.70 0.19 -2.19 16 18 C -0.12 -1.94 6.80 31.32 0.21 -1.73 16 19 C -0.12 -1.99 6.80 31.32 0.21 -1.78 16 20 C -0.11 -2.19 6.27 31.67 0.20 -1.99 16 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.08 1.62 6.51 -2.39 -0.02 1.60 16 24 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.16 2.53 6.76 -2.39 -0.02 2.52 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.30 7.95 -2.39 -0.02 1.29 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.33 8.05 -2.39 -0.02 1.32 16 Total: -1.00 -80.27 305.52 2.91 -77.36 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.01 Total: 1.01 kcal Atomic # 6 Polarization: -70.59 SS G_CDS: 2.67 Total: -67.92 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -2.40 Total: -49.78 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Atomic # 16 Polarization: 45.53 SS G_CDS: -0.69 Total: 44.84 kcal Total: -80.27 2.91 -77.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.121 kcal (2) G-P(sol) polarization free energy of solvation -80.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds