Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47045 * 59.99897 * 9 7 5 11 11 H 1.48503 * 109.47476 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47106 * 299.99848 * 9 7 5 13 13 S 1.81401 * 109.47149 * 119.99990 * 2 1 3 14 14 O 1.42105 * 109.46960 * 188.61046 * 13 2 1 15 15 C 1.81398 * 103.00314 * 305.00036 * 13 2 1 16 16 C 1.52995 * 109.47072 * 180.02562 * 15 13 2 17 17 C 1.54261 * 110.03246 * 292.90628 * 16 15 13 18 18 C 1.54967 * 104.16111 * 217.13940 * 17 16 15 19 19 C 1.54888 * 102.77768 * 37.88996 * 18 17 16 20 20 C 1.53873 * 110.03059 * 175.68991 * 16 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 25 25 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 26 26 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47005 * 300.00050 * 15 13 2 28 28 H 1.09001 * 109.46972 * 59.99530 * 15 13 2 29 29 H 1.09000 * 110.01788 * 54.30118 * 16 15 13 30 30 H 1.08999 * 110.49066 * 335.78248 * 17 16 15 31 31 H 1.08998 * 110.48920 * 98.43030 * 17 16 15 32 32 H 1.09003 * 110.71968 * 279.57400 * 18 17 16 33 33 H 1.09004 * 110.92504 * 156.29706 * 18 17 16 34 34 H 1.09002 * 110.48606 * 203.41072 * 19 18 17 35 35 H 1.08999 * 110.59889 * 80.81634 * 19 18 17 36 36 H 1.08999 * 110.03537 * 238.56868 * 20 16 15 37 37 H 1.09007 * 110.03599 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.6845 -1.6862 -1.2272 11 1 6.5871 -1.7622 -3.6488 12 1 6.4843 0.3699 -2.4974 13 16 2.1347 -0.8551 1.4811 14 8 3.5415 -0.6839 1.5857 15 6 1.3149 0.0373 2.8310 16 6 1.7289 -0.5731 4.1714 17 6 1.1656 -2.0036 4.2970 18 6 0.7785 -2.1286 5.7924 19 6 0.2170 -0.7227 6.1196 20 6 1.1266 0.2411 5.3298 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.7515 -1.7715 -1.2057 25 1 1.6053 -0.2617 -2.1370 26 1 4.0608 -2.2459 -4.0341 27 1 1.6086 1.0867 2.8038 28 1 0.2340 -0.0405 2.7142 29 1 2.8157 -0.5912 4.2533 30 1 0.2863 -2.1244 3.6643 31 1 1.9277 -2.7381 4.0368 32 1 1.6564 -2.3453 6.4011 33 1 0.0139 -2.8925 5.9341 34 1 0.2872 -0.5233 7.1889 35 1 -0.8159 -0.6344 5.7829 36 1 1.9209 0.6173 5.9744 37 1 0.5388 1.0709 4.9371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = -72.798974 kcal Electronic energy + Delta-G solvation = -16057.546319 eV Core-core repulsion = 13539.172329 eV Total energy + Delta-G solvation = -2518.373990 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.23885 -34.79149 -34.49234 -32.03207 -31.14770 -28.70202 -27.46048 -24.97827 -23.25589 -20.78284 -20.68519 -19.48470 -16.74476 -16.32658 -15.89664 -15.20987 -14.82196 -14.44142 -14.10564 -13.81493 -13.33691 -13.16717 -12.67044 -12.11492 -12.01126 -11.60477 -11.51146 -11.20269 -11.12448 -11.07365 -10.92907 -10.73843 -10.65376 -10.62905 -10.54915 -10.41690 -10.31340 -9.60752 -9.11400 -8.71264 -8.29266 -7.36174 -5.96469 -3.97713 2.27172 3.42019 3.43458 3.48315 3.52711 4.54978 4.56732 4.58554 4.64150 4.77068 5.28433 5.36048 5.41331 5.44241 5.56309 5.63542 5.65744 5.69298 5.79387 5.82572 5.87720 5.94037 6.01301 6.05493 6.08240 6.26777 6.27997 6.42797 6.49790 6.61435 6.83376 7.59929 7.61996 8.05359 8.39525 9.12783 9.68854 11.14504 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.036687 B = 0.005859 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.032199 B = 4777.684245 C = 5149.248826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.395 4.395 3 H 0.075 0.925 4 C 0.047 3.953 5 C -0.531 4.531 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.279 1.279 13 S 1.243 4.757 14 O -0.832 6.832 15 C -0.462 4.462 16 C -0.069 4.069 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.118 4.118 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.429 -0.677 15.521 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.514 4.514 3 H 0.094 0.906 4 C 0.009 3.991 5 C -0.570 4.570 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.204 1.204 13 S 1.441 4.559 14 O -0.827 6.827 15 C -0.596 4.596 16 C -0.089 4.089 17 C -0.168 4.168 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.157 4.157 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.750 -1.511 15.434 18.319 hybrid contribution 1.617 2.501 -0.249 2.989 sum -8.133 0.990 15.185 17.254 Atomic orbital electron populations 1.21543 0.93498 1.02081 1.01187 1.27383 1.00714 1.08762 1.14564 0.90629 1.18841 0.95879 0.95038 0.89321 1.21528 0.91922 1.34767 1.08757 0.91251 1.24935 0.98416 0.95083 0.95494 1.69951 1.35619 1.36052 1.12134 0.86660 0.85947 0.78254 0.77263 1.19905 1.21338 1.20427 1.70278 0.90413 1.10182 0.85004 1.93114 1.24906 1.81391 1.83269 1.28102 1.10437 1.09577 1.11501 1.21317 1.00237 0.94756 0.92545 1.22619 1.01474 0.96041 0.96701 1.22495 1.00474 0.96769 0.96445 1.22355 0.99233 0.95215 0.99370 1.22253 0.98720 0.98174 0.96560 0.91701 0.93589 0.92461 0.95504 0.95437 0.92983 0.90660 0.87225 0.90925 0.90326 0.90941 0.91712 0.91520 0.92181 0.91649 0.92293 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.94 37.16 0.33 -1.52 16 2 C -0.40 -7.89 2.84 -26.73 -0.08 -7.97 16 3 H 0.08 1.63 8.14 -51.92 -0.42 1.20 16 4 C 0.05 1.20 4.45 -27.88 -0.12 1.08 16 5 C -0.53 -15.72 8.24 -34.44 -0.28 -16.01 16 6 H 0.07 2.15 6.23 -52.49 -0.33 1.83 16 7 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 23.35 29.54 -169.99 -5.02 18.33 16 10 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 13 S 1.24 22.41 11.98 -107.50 -1.29 21.12 16 14 O -0.83 -20.66 16.08 -35.23 -0.57 -21.22 16 15 C -0.46 -6.38 4.42 37.16 0.16 -6.22 16 16 C -0.07 -0.89 2.93 -89.51 -0.26 -1.15 16 17 C -0.13 -1.38 5.87 -25.03 -0.15 -1.53 16 18 C -0.12 -1.13 6.91 -24.70 -0.17 -1.30 16 19 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 20 C -0.12 -1.30 6.46 -25.61 -0.17 -1.46 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.55 6.51 -51.93 -0.34 0.22 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 28 H 0.11 1.21 6.78 -51.92 -0.35 0.86 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.70 7.77 -51.93 -0.40 0.30 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -35.22 304.68 -9.00 -44.22 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -6.45 Total: -4.91 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -1.00 Total: -35.62 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.57 Total: -21.22 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Atomic # 16 Polarization: 22.41 SS G_CDS: -1.29 Total: 21.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.22 -9.00 -44.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.584 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds