Wall clock time and date at job start Mon Mar 30 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47045 * 59.99897 * 9 7 5 11 11 H 1.48503 * 109.47476 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47106 * 299.99848 * 9 7 5 13 13 S 1.81401 * 109.47149 * 119.99990 * 2 1 3 14 14 O 1.42105 * 109.46960 * 188.61046 * 13 2 1 15 15 C 1.81398 * 103.00314 * 305.00036 * 13 2 1 16 16 C 1.52995 * 109.47072 * 180.02562 * 15 13 2 17 17 C 1.54261 * 110.03246 * 292.90628 * 16 15 13 18 18 C 1.54967 * 104.16111 * 217.13940 * 17 16 15 19 19 C 1.54888 * 102.77768 * 37.88996 * 18 17 16 20 20 C 1.53873 * 110.03059 * 175.68991 * 16 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 25 25 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 26 26 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47005 * 300.00050 * 15 13 2 28 28 H 1.09001 * 109.46972 * 59.99530 * 15 13 2 29 29 H 1.09000 * 110.01788 * 54.30118 * 16 15 13 30 30 H 1.08999 * 110.49066 * 335.78248 * 17 16 15 31 31 H 1.08998 * 110.48920 * 98.43030 * 17 16 15 32 32 H 1.09003 * 110.71968 * 279.57400 * 18 17 16 33 33 H 1.09004 * 110.92504 * 156.29706 * 18 17 16 34 34 H 1.09002 * 110.48606 * 203.41072 * 19 18 17 35 35 H 1.08999 * 110.59889 * 80.81634 * 19 18 17 36 36 H 1.08999 * 110.03537 * 238.56868 * 20 16 15 37 37 H 1.09007 * 110.03599 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.6845 -1.6862 -1.2272 11 1 6.5871 -1.7622 -3.6488 12 1 6.4843 0.3699 -2.4974 13 16 2.1347 -0.8551 1.4811 14 8 3.5415 -0.6839 1.5857 15 6 1.3149 0.0373 2.8310 16 6 1.7289 -0.5731 4.1714 17 6 1.1656 -2.0036 4.2970 18 6 0.7785 -2.1286 5.7924 19 6 0.2170 -0.7227 6.1196 20 6 1.1266 0.2411 5.3298 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 1.7515 -1.7715 -1.2057 25 1 1.6053 -0.2617 -2.1370 26 1 4.0608 -2.2459 -4.0341 27 1 1.6086 1.0867 2.8038 28 1 0.2340 -0.0405 2.7142 29 1 2.8157 -0.5912 4.2533 30 1 0.2863 -2.1244 3.6643 31 1 1.9277 -2.7381 4.0368 32 1 1.6564 -2.3453 6.4011 33 1 0.0139 -2.8925 5.9341 34 1 0.2872 -0.5233 7.1889 35 1 -0.8159 -0.6344 5.7829 36 1 1.9209 0.6173 5.9744 37 1 0.5388 1.0709 4.9371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:01 Heat of formation + Delta-G solvation = -95.836402 kcal Electronic energy + Delta-G solvation = -16058.545297 eV Core-core repulsion = 13539.172329 eV Total energy + Delta-G solvation = -2519.372968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.09975 -36.54233 -36.34279 -34.04087 -32.17398 -29.49075 -29.31538 -26.04478 -25.16692 -22.42890 -21.45818 -20.47321 -18.57285 -18.17745 -17.11181 -16.65066 -16.34234 -15.89911 -15.40832 -15.15607 -14.75601 -14.11963 -14.06476 -13.86256 -13.61853 -13.32733 -13.02059 -12.69992 -12.55238 -12.44774 -12.26507 -12.13326 -11.90072 -11.80643 -11.69099 -11.52893 -11.38215 -11.27258 -11.12804 -10.68226 -10.28826 -8.92486 -8.25326 -6.32140 0.81026 1.28241 1.31354 1.41190 2.04271 2.36290 3.04549 3.18144 3.72328 3.78399 3.85825 4.14563 4.33744 4.40065 4.44047 4.61614 4.66515 4.68725 4.80636 4.89882 4.95726 5.01080 5.10714 5.12532 5.17575 5.19366 5.34456 5.38571 5.43314 5.48071 5.53837 5.58832 5.60474 5.78367 6.19280 6.83270 7.36691 8.85311 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.036687 B = 0.005859 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.032199 B = 4777.684245 C = 5149.248826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.394 4.394 3 H 0.050 0.950 4 C 0.048 3.952 5 C -0.550 4.550 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.277 1.277 13 S 1.267 4.733 14 O -0.910 6.910 15 C -0.438 4.438 16 C -0.077 4.077 17 C -0.138 4.138 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.118 4.118 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.004 0.996 26 H 0.266 0.734 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 -0.898 17.024 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.513 4.513 3 H 0.069 0.931 4 C 0.010 3.990 5 C -0.588 4.588 6 H 0.064 0.936 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.191 1.191 12 H -0.202 1.202 13 S 1.469 4.531 14 O -0.906 6.906 15 C -0.576 4.576 16 C -0.097 4.097 17 C -0.175 4.175 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.157 4.157 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.023 0.977 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.931 -1.745 16.892 20.754 hybrid contribution 2.240 2.621 -0.617 3.503 sum -9.690 0.876 16.275 18.961 Atomic orbital electron populations 1.21607 0.89033 1.04493 1.02929 1.27311 1.04538 1.06421 1.13033 0.93095 1.18720 0.93542 0.95447 0.91254 1.21806 0.94362 1.34507 1.08168 0.93579 1.25644 1.02413 0.95012 0.95397 1.70009 1.37033 1.36517 1.12516 0.85864 0.81395 0.78357 0.77613 1.20620 1.19109 1.20229 1.69174 0.88196 1.10547 0.85142 1.93003 1.29196 1.83569 1.84840 1.27895 1.12093 1.08201 1.09435 1.21404 0.98652 0.97004 0.92608 1.22741 1.02159 0.94002 0.98632 1.22509 1.00934 0.97582 0.94966 1.22361 0.99410 0.94185 0.99711 1.22254 0.99046 0.98583 0.95850 0.88992 0.89790 0.92867 0.95551 0.97737 0.92501 0.91531 0.82778 0.94274 0.87879 0.91674 0.92270 0.89461 0.91171 0.90066 0.92846 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.94 71.98 0.64 -2.65 16 2 C -0.39 -15.72 2.84 30.59 0.09 -15.63 16 3 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.05 2.52 4.45 29.85 0.13 2.65 16 5 C -0.55 -33.67 8.24 25.60 0.21 -33.46 16 6 H 0.05 3.00 6.23 -2.91 -0.02 2.98 16 7 C 0.01 0.86 5.46 84.65 0.46 1.32 16 8 N -0.92 -56.52 13.29 21.44 0.28 -56.23 16 9 Si 0.94 48.75 29.54 68.60 2.03 50.78 16 10 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 13 S 1.27 45.63 11.98 -56.49 -0.68 44.96 16 14 O -0.91 -47.30 16.08 -148.98 -2.40 -49.70 16 15 C -0.44 -11.10 4.42 71.98 0.32 -10.78 16 16 C -0.08 -1.85 2.93 -10.07 -0.03 -1.88 16 17 C -0.14 -2.56 5.87 31.69 0.19 -2.38 16 18 C -0.12 -1.83 6.91 31.91 0.22 -1.61 16 19 C -0.12 -1.71 6.83 31.67 0.22 -1.50 16 20 C -0.12 -2.30 6.46 31.32 0.20 -2.09 16 21 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.08 1.62 6.51 -2.39 -0.02 1.61 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.15 2.59 6.78 -2.39 -0.02 2.57 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.40 7.77 -2.39 -0.02 1.38 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.27 7.67 -2.38 -0.02 1.26 16 Total: -1.00 -79.99 304.68 2.90 -77.09 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.01 Total: 1.12 kcal Atomic # 6 Polarization: -70.66 SS G_CDS: 2.65 Total: -68.01 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.40 Total: -49.70 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Atomic # 16 Polarization: 45.63 SS G_CDS: -0.68 Total: 44.96 kcal Total: -79.99 2.90 -77.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.744 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds