Wall clock time and date at job start Mon Mar 30 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47233 * 119.99731 * 2 1 3 5 5 C 1.50697 * 109.47069 * 184.99839 * 4 2 1 6 6 H 1.07996 * 120.00243 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00221 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99397 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00467 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46923 * 90.00124 * 9 7 5 11 11 H 1.48499 * 109.47459 * 210.00432 * 9 7 5 12 12 H 1.48498 * 109.46713 * 330.00367 * 9 7 5 13 13 S 1.81396 * 109.47111 * 240.00082 * 2 1 3 14 14 O 1.42102 * 109.46919 * 348.93689 * 13 2 1 15 15 C 1.81398 * 103.00282 * 105.32571 * 13 2 1 16 16 C 1.52998 * 109.47141 * 303.53458 * 15 13 2 17 17 C 1.53007 * 109.47330 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46972 * 59.99946 * 17 16 15 19 19 C 1.53002 * 109.47048 * 299.99823 * 18 17 16 20 20 C 1.52996 * 109.47458 * 183.53010 * 15 13 2 21 21 H 1.09004 * 109.47224 * 295.47507 * 1 2 3 22 22 H 1.09000 * 109.47282 * 175.47853 * 1 2 3 23 23 H 1.09006 * 109.47485 * 55.47529 * 1 2 3 24 24 H 1.08990 * 109.47584 * 305.00044 * 4 2 1 25 25 H 1.09004 * 109.46589 * 65.00430 * 4 2 1 26 26 H 0.97007 * 119.99743 * 179.97438 * 8 7 5 27 27 H 1.09010 * 109.46966 * 63.53156 * 15 13 2 28 28 H 1.09000 * 109.46895 * 299.99581 * 16 15 13 29 29 H 1.08997 * 109.47214 * 59.99638 * 16 15 13 30 30 H 1.09000 * 109.46981 * 299.99763 * 17 16 15 31 31 H 1.09003 * 109.47051 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47172 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47416 * 60.00084 * 18 17 16 34 34 H 1.09000 * 109.47225 * 300.00378 * 19 18 17 35 35 H 1.08997 * 109.47125 * 180.02562 * 19 18 17 36 36 H 1.08999 * 109.47270 * 300.00392 * 20 15 13 37 37 H 1.09000 * 109.47044 * 60.00134 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3127 6 1 4.0788 -0.0855 0.5396 7 6 4.2305 -1.1934 2.3577 8 7 3.5765 -1.8385 3.2989 9 14 6.0921 -1.0610 2.4368 10 1 6.4698 0.1610 3.1911 11 1 6.6448 -2.2566 3.1226 12 1 6.6416 -0.9823 1.0595 13 16 2.1346 -0.8551 -1.4811 14 8 1.0528 -1.5201 -2.1189 15 6 2.7111 0.5066 -2.5318 16 6 1.5657 1.4951 -2.7596 17 6 2.0521 2.6440 -3.6453 18 6 2.5206 2.0873 -4.9912 19 6 3.6661 1.0989 -4.7633 20 6 3.1793 -0.0505 -3.8776 21 1 -0.3634 0.4420 0.9278 22 1 -0.3634 -1.0245 -0.0810 23 1 -0.3634 0.5825 -0.8467 24 1 1.6054 -0.2617 2.1369 25 1 1.7516 -1.7715 1.2055 26 1 4.0610 -2.2459 4.0340 27 1 3.5400 1.0177 -2.0419 28 1 0.7368 0.9841 -3.2495 29 1 1.2322 1.8920 -1.8009 30 1 2.8808 3.1549 -3.1551 31 1 1.2359 3.3480 -3.8080 32 1 2.8675 2.9057 -5.6221 33 1 1.6919 1.5764 -5.4814 34 1 4.4948 1.6098 -4.2731 35 1 4.0001 0.7026 -5.7222 36 1 3.9953 -0.7547 -3.7152 37 1 2.3504 -0.5615 -4.3674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695887235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:51 Heat of formation + Delta-G solvation = -97.457182 kcal Electronic energy + Delta-G solvation = -16420.282241 eV Core-core repulsion = 13900.838991 eV Total energy + Delta-G solvation = -2519.443250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13599 -36.58736 -36.34861 -33.98331 -31.75059 -31.66116 -29.32013 -25.20762 -23.88706 -23.56570 -22.11923 -20.62762 -18.38517 -18.32366 -17.26830 -16.49402 -16.20764 -15.61190 -15.19843 -15.10284 -14.83750 -14.42202 -13.85993 -13.79242 -13.59635 -13.36130 -13.07332 -13.05878 -12.99331 -12.58373 -12.32573 -12.21121 -12.07113 -11.93086 -11.73801 -11.41643 -11.37172 -11.09111 -11.03209 -10.55639 -10.26054 -8.78363 -8.06257 -6.17506 0.79053 1.57371 1.58496 1.69134 1.95761 2.55375 2.99616 3.30904 3.71661 3.75661 4.02364 4.08562 4.20107 4.29951 4.32408 4.46735 4.48242 4.58593 4.61797 4.65530 4.79891 4.92887 5.00253 5.06715 5.11633 5.14742 5.21431 5.26476 5.31366 5.34290 5.53030 5.55570 5.60995 5.90959 6.28734 6.98103 7.53088 9.06235 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.007452 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.117089 B = 3756.700464 C = 4319.292629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.383 4.383 3 H 0.116 0.884 4 C 0.057 3.943 5 C -0.532 4.532 6 H 0.092 0.908 7 C 0.003 3.997 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.240 1.240 13 S 1.256 4.744 14 O -0.913 6.913 15 C -0.403 4.403 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.099 4.099 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.053 0.947 24 H -0.002 1.002 25 H -0.008 1.008 26 H 0.261 0.739 27 H 0.143 0.857 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 8.073 -13.706 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.502 4.502 3 H 0.134 0.866 4 C 0.018 3.982 5 C -0.570 4.570 6 H 0.110 0.890 7 C -0.195 4.195 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.162 1.162 13 S 1.459 4.541 14 O -0.908 6.908 15 C -0.521 4.521 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.149 4.149 20 C -0.138 4.138 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.316 6.962 -13.753 15.767 hybrid contribution -1.381 1.084 0.382 1.797 sum 1.935 8.046 -13.370 15.724 Atomic orbital electron populations 1.21626 0.94772 1.00977 1.01720 1.27293 1.00299 1.09841 1.12761 0.86552 1.18647 0.96191 0.93403 0.89929 1.21717 0.91855 1.34255 1.09136 0.89022 1.25951 1.03515 0.94750 0.95284 1.70124 1.37851 1.36943 1.12984 0.85588 0.79600 0.77033 0.79866 1.20592 1.21955 1.16240 1.70866 1.06809 0.90045 0.86362 1.92867 1.60200 1.63445 1.74306 1.27607 1.05501 1.11293 1.07703 1.21614 0.96196 0.97086 1.00447 1.21512 1.01228 0.96427 0.95896 1.21558 0.98271 0.99189 0.96780 1.21517 0.98148 0.95601 0.99605 1.21278 1.00874 0.98872 0.92769 0.91964 0.94377 0.92785 0.98390 0.98939 0.93016 0.83873 0.94325 0.91961 0.90552 0.91791 0.90283 0.93442 0.90325 0.90607 0.89348 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.66 71.98 0.62 -4.54 16 2 C -0.38 -15.07 2.09 30.59 0.06 -15.01 16 3 H 0.12 4.11 7.14 -2.39 -0.02 4.09 16 4 C 0.06 2.78 4.45 29.85 0.13 2.91 16 5 C -0.53 -26.11 8.53 25.60 0.22 -25.89 16 6 H 0.09 3.87 7.60 -2.91 -0.02 3.85 16 7 C 0.00 0.15 5.46 84.66 0.46 0.61 16 8 N -0.94 -54.16 13.29 21.45 0.28 -53.88 16 9 Si 0.95 39.55 29.54 68.60 2.03 41.58 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 13 S 1.26 45.21 11.78 -56.49 -0.67 44.55 16 14 O -0.91 -41.29 16.99 -148.98 -2.53 -43.82 16 15 C -0.40 -10.94 2.57 30.59 0.08 -10.86 16 16 C -0.12 -3.15 4.91 30.60 0.15 -3.00 16 17 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 18 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 19 C -0.11 -2.07 5.93 30.61 0.18 -1.89 16 20 C -0.10 -2.41 5.21 30.61 0.16 -2.25 16 21 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 22 H 0.04 1.60 7.79 -2.39 -0.02 1.58 16 23 H 0.05 1.91 7.57 -2.38 -0.02 1.89 16 24 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.14 3.30 8.14 -2.38 -0.02 3.28 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.72 6.25 -2.39 -0.01 1.70 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.72 303.08 2.55 -63.17 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.01 Total: 12.65 kcal Atomic # 6 Polarization: -66.67 SS G_CDS: 2.43 Total: -64.24 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.28 Total: -53.88 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -2.53 Total: -43.82 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.67 Total: 44.55 kcal Total: -65.72 2.55 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.289 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds