Wall clock time and date at job start Mon Mar 30 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47041 * 2 1 4 4 C 1.53000 * 109.47238 * 240.00186 * 2 1 3 5 5 C 1.50696 * 109.47387 * 174.99893 * 4 2 1 6 6 H 1.08003 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00336 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47151 * 60.00163 * 9 7 5 11 11 H 1.48501 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47032 * 300.00131 * 9 7 5 13 13 S 1.81403 * 109.47283 * 120.00171 * 2 1 3 14 14 O 1.42102 * 109.46962 * 109.10455 * 13 2 1 15 15 C 1.81399 * 102.99864 * 225.49163 * 13 2 1 16 16 C 1.52999 * 109.47081 * 56.87263 * 15 13 2 17 17 C 1.53001 * 109.47256 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47098 * 300.00458 * 17 16 15 19 19 C 1.52999 * 109.47441 * 59.99655 * 18 17 16 20 20 C 1.52997 * 109.46894 * 176.87050 * 15 13 2 21 21 H 1.08998 * 109.46867 * 64.97104 * 1 2 3 22 22 H 1.08995 * 109.46984 * 184.97179 * 1 2 3 23 23 H 1.09003 * 109.46860 * 304.97253 * 1 2 3 24 24 H 1.08997 * 109.47123 * 294.99984 * 4 2 1 25 25 H 1.09001 * 109.47129 * 54.99895 * 4 2 1 26 26 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47150 * 296.87243 * 15 13 2 28 28 H 1.08995 * 109.47522 * 299.99887 * 16 15 13 29 29 H 1.09004 * 109.47157 * 59.99914 * 16 15 13 30 30 H 1.08999 * 109.47697 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.46904 * 60.00008 * 17 16 15 32 32 H 1.09004 * 109.46876 * 299.99568 * 18 17 16 33 33 H 1.08995 * 109.47264 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47282 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.47145 * 60.00021 * 19 18 17 36 36 H 1.08994 * 109.47380 * 300.00052 * 20 15 13 37 37 H 1.09005 * 109.47363 * 60.00549 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2996 9 14 6.0920 -1.0610 -2.4369 10 1 6.6846 -1.6861 -1.2272 11 1 6.5871 -1.7611 -3.6494 12 1 6.4844 0.3700 -2.4973 13 16 2.1347 -0.8552 1.4811 14 8 2.7061 -2.1017 1.1082 15 6 3.4389 0.2506 2.0868 16 6 2.8545 1.6436 2.3295 17 6 3.9544 2.5762 2.8410 18 6 4.5214 2.0256 4.1511 19 6 5.1058 0.6326 3.9084 20 6 4.0063 -0.2996 3.3968 21 1 -0.3633 0.4348 -0.9312 22 1 -0.3633 -1.0238 0.0891 23 1 -0.3633 0.5891 0.8421 24 1 1.7517 -1.7714 -1.2056 25 1 1.6054 -0.2617 -2.1370 26 1 4.0608 -2.2445 -4.0350 27 1 4.2346 0.3147 1.3447 28 1 2.4502 2.0357 1.3963 29 1 2.0587 1.5795 3.0716 30 1 3.5382 3.5687 3.0134 31 1 4.7504 2.6403 2.0991 32 1 3.7253 1.9615 4.8929 33 1 5.3052 2.6897 4.5152 34 1 5.5093 0.2402 4.8418 35 1 5.9018 0.6967 3.1666 36 1 3.2106 -0.3637 4.1389 37 1 4.4228 -1.2921 3.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695887238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:53 Heat of formation + Delta-G solvation = -74.146594 kcal Electronic energy + Delta-G solvation = -16660.182716 eV Core-core repulsion = 14141.750289 eV Total energy + Delta-G solvation = -2518.432427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.00971 -34.77376 -34.33981 -31.96811 -30.60118 -30.53283 -27.39276 -23.34403 -22.60517 -22.43701 -20.38897 -19.55828 -16.55208 -16.37151 -15.83199 -14.69243 -14.57270 -14.14231 -14.06744 -13.91743 -13.25120 -12.99773 -12.35494 -12.28094 -12.02482 -11.91113 -11.63576 -11.25177 -11.14446 -11.10793 -10.98736 -10.71868 -10.57581 -10.50111 -10.33824 -10.10418 -9.88749 -9.43461 -9.08122 -8.72449 -8.30654 -7.28989 -5.95755 -3.97025 2.45893 3.33952 3.37953 3.41619 3.46843 4.49215 4.66993 4.86265 4.96944 5.05575 5.38477 5.41963 5.45235 5.60264 5.65872 5.71228 5.74073 5.82313 5.86593 5.89637 6.02137 6.12452 6.23958 6.26188 6.33144 6.37131 6.43204 6.54826 6.64604 6.66567 6.94821 7.62425 7.76051 7.98749 8.36550 9.03892 9.65749 11.16317 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.009507 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.817917 B = 2944.423204 C = 3670.460587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.407 4.407 3 H 0.097 0.903 4 C 0.040 3.960 5 C -0.517 4.517 6 H 0.047 0.953 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.278 1.278 13 S 1.224 4.776 14 O -0.825 6.825 15 C -0.416 4.416 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.091 4.091 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.019 0.981 26 H 0.260 0.740 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 8.325 15.554 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.525 4.525 3 H 0.116 0.884 4 C 0.002 3.998 5 C -0.555 4.555 6 H 0.066 0.934 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 S 1.423 4.577 14 O -0.820 6.820 15 C -0.531 4.531 16 C -0.129 4.129 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.129 4.129 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.652 7.322 15.746 17.978 hybrid contribution 2.887 0.371 -1.858 3.454 sum -1.765 7.693 13.888 15.974 Atomic orbital electron populations 1.21402 0.93328 1.01211 1.01614 1.27502 1.00800 1.09117 1.15044 0.88443 1.18933 0.95493 0.95301 0.90052 1.21070 0.91910 1.34345 1.08216 0.93447 1.24888 0.98073 0.95030 0.95763 1.69937 1.35467 1.35771 1.12030 0.86753 0.86284 0.78054 0.77565 1.20198 1.21071 1.20327 1.69839 1.02712 0.83516 1.01647 1.93153 1.76936 1.29883 1.82046 1.27601 1.14688 1.07222 1.03627 1.21221 0.97591 0.92666 1.01408 1.21524 0.98735 0.98097 0.97220 1.21508 0.99936 0.96319 0.97570 1.21501 0.98138 0.95324 1.00458 1.21123 0.98190 0.98716 0.94892 0.92334 0.93047 0.92742 0.95683 0.96259 0.93001 0.88348 0.91160 0.91146 0.92209 0.92190 0.91980 0.92664 0.92321 0.92231 0.91438 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.20 37.16 0.34 -1.44 16 2 C -0.41 -7.97 2.66 -26.73 -0.07 -8.05 16 3 H 0.10 1.81 5.96 -51.93 -0.31 1.50 16 4 C 0.04 1.08 4.10 -27.88 -0.11 0.96 16 5 C -0.52 -15.42 7.96 -34.44 -0.27 -15.69 16 6 H 0.05 1.36 5.77 -52.48 -0.30 1.06 16 7 C 0.06 1.97 5.46 -17.82 -0.10 1.87 16 8 N -0.89 -28.63 13.29 55.43 0.74 -27.90 16 9 Si 0.89 23.43 29.54 -169.99 -5.02 18.41 16 10 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 S 1.22 21.87 11.94 -107.50 -1.28 20.58 16 14 O -0.83 -21.05 16.40 -35.23 -0.58 -21.62 16 15 C -0.42 -6.68 2.54 -26.73 -0.07 -6.75 16 16 C -0.09 -1.13 5.02 -26.73 -0.13 -1.27 16 17 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 18 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 19 C -0.12 -1.44 5.92 -26.75 -0.16 -1.60 16 20 C -0.09 -1.28 5.21 -26.75 -0.14 -1.41 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.02 0.76 7.78 -51.93 -0.40 0.35 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 27 H 0.10 1.97 6.45 -51.93 -0.34 1.64 16 28 H 0.07 0.90 6.13 -51.93 -0.32 0.59 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -37.53 298.65 -8.98 -46.51 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.30 Total: -4.17 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: -1.03 Total: -36.32 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.74 Total: -27.90 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.58 Total: -21.62 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Atomic # 16 Polarization: 21.87 SS G_CDS: -1.28 Total: 20.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -37.53 -8.98 -46.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.635 kcal (2) G-P(sol) polarization free energy of solvation -37.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds