Wall clock time and date at job start Mon Mar 30 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47041 * 2 1 4 4 C 1.53000 * 109.47238 * 240.00186 * 2 1 3 5 5 C 1.50696 * 109.47387 * 174.99893 * 4 2 1 6 6 H 1.08003 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00336 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47151 * 60.00163 * 9 7 5 11 11 H 1.48501 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47032 * 300.00131 * 9 7 5 13 13 S 1.81403 * 109.47283 * 120.00171 * 2 1 3 14 14 O 1.42102 * 109.46962 * 109.10455 * 13 2 1 15 15 C 1.81399 * 102.99864 * 225.49163 * 13 2 1 16 16 C 1.52999 * 109.47081 * 56.87263 * 15 13 2 17 17 C 1.53001 * 109.47256 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47098 * 300.00458 * 17 16 15 19 19 C 1.52999 * 109.47441 * 59.99655 * 18 17 16 20 20 C 1.52997 * 109.46894 * 176.87050 * 15 13 2 21 21 H 1.08998 * 109.46867 * 64.97104 * 1 2 3 22 22 H 1.08995 * 109.46984 * 184.97179 * 1 2 3 23 23 H 1.09003 * 109.46860 * 304.97253 * 1 2 3 24 24 H 1.08997 * 109.47123 * 294.99984 * 4 2 1 25 25 H 1.09001 * 109.47129 * 54.99895 * 4 2 1 26 26 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47150 * 296.87243 * 15 13 2 28 28 H 1.08995 * 109.47522 * 299.99887 * 16 15 13 29 29 H 1.09004 * 109.47157 * 59.99914 * 16 15 13 30 30 H 1.08999 * 109.47697 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.46904 * 60.00008 * 17 16 15 32 32 H 1.09004 * 109.46876 * 299.99568 * 18 17 16 33 33 H 1.08995 * 109.47264 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47282 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.47145 * 60.00021 * 19 18 17 36 36 H 1.08994 * 109.47380 * 300.00052 * 20 15 13 37 37 H 1.09005 * 109.47363 * 60.00549 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2996 9 14 6.0920 -1.0610 -2.4369 10 1 6.6846 -1.6861 -1.2272 11 1 6.5871 -1.7611 -3.6494 12 1 6.4844 0.3700 -2.4973 13 16 2.1347 -0.8552 1.4811 14 8 2.7061 -2.1017 1.1082 15 6 3.4389 0.2506 2.0868 16 6 2.8545 1.6436 2.3295 17 6 3.9544 2.5762 2.8410 18 6 4.5214 2.0256 4.1511 19 6 5.1058 0.6326 3.9084 20 6 4.0063 -0.2996 3.3968 21 1 -0.3633 0.4348 -0.9312 22 1 -0.3633 -1.0238 0.0891 23 1 -0.3633 0.5891 0.8421 24 1 1.7517 -1.7714 -1.2056 25 1 1.6054 -0.2617 -2.1370 26 1 4.0608 -2.2445 -4.0350 27 1 4.2346 0.3147 1.3447 28 1 2.4502 2.0357 1.3963 29 1 2.0587 1.5795 3.0716 30 1 3.5382 3.5687 3.0134 31 1 4.7504 2.6403 2.0991 32 1 3.7253 1.9615 4.8929 33 1 5.3052 2.6897 4.5152 34 1 5.5093 0.2402 4.8418 35 1 5.9018 0.6967 3.1666 36 1 3.2106 -0.3637 4.1389 37 1 4.4228 -1.2921 3.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695887238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:52 Heat of formation + Delta-G solvation = -100.449612 kcal Electronic energy + Delta-G solvation = -16661.323301 eV Core-core repulsion = 14141.750289 eV Total energy + Delta-G solvation = -2519.573012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04463 -36.66250 -36.20501 -34.06938 -31.67253 -31.55109 -29.37771 -25.31341 -23.83368 -23.47497 -22.01589 -20.64431 -18.68082 -18.04204 -17.21886 -16.74467 -16.07590 -15.46282 -15.22164 -15.00536 -14.86149 -14.51306 -13.99883 -13.70844 -13.44274 -13.39795 -13.19975 -13.01605 -12.69937 -12.60932 -12.54476 -12.38890 -12.08242 -11.94765 -11.57917 -11.41699 -11.26801 -11.18468 -10.92252 -10.72446 -10.22793 -8.94214 -8.33117 -6.41325 0.99470 1.17293 1.22957 1.29142 1.97893 2.24870 3.00272 3.18243 3.80724 3.86473 4.11785 4.24872 4.31123 4.38507 4.46748 4.58847 4.64343 4.70118 4.73041 4.82025 4.97889 5.04841 5.14449 5.21557 5.26459 5.28543 5.31746 5.37154 5.41760 5.43302 5.45212 5.53912 5.63792 5.71269 6.03372 6.71809 7.25545 8.79831 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.009507 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.817917 B = 2944.423204 C = 3670.460587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.407 4.407 3 H 0.112 0.888 4 C 0.042 3.958 5 C -0.531 4.531 6 H 0.052 0.948 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.257 1.257 13 S 1.285 4.715 14 O -0.910 6.910 15 C -0.406 4.406 16 C -0.093 4.093 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.095 4.095 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.114 0.886 24 H -0.020 1.020 25 H -0.006 1.006 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 10.856 18.387 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.524 4.524 3 H 0.130 0.870 4 C 0.005 3.995 5 C -0.569 4.569 6 H 0.070 0.930 7 C -0.199 4.199 8 N -0.572 5.572 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.181 1.181 13 S 1.487 4.513 14 O -0.906 6.906 15 C -0.525 4.525 16 C -0.131 4.131 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.134 4.134 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.133 0.867 24 H -0.001 1.001 25 H 0.012 0.988 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.128 0.872 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.152 9.850 18.564 21.638 hybrid contribution 3.055 -0.363 -2.689 4.086 sum -2.097 9.487 15.875 18.612 Atomic orbital electron populations 1.21496 0.89596 1.02422 1.04033 1.27522 1.04267 1.08917 1.11720 0.86965 1.18789 0.94398 0.93429 0.92932 1.21561 0.93633 1.33698 1.07969 0.93011 1.25877 1.03340 0.94961 0.95708 1.70072 1.37436 1.36941 1.12798 0.85745 0.80202 0.79173 0.77511 1.20817 1.19818 1.18127 1.68599 1.02419 0.81207 0.99060 1.93018 1.79351 1.35271 1.82963 1.27528 1.12260 1.09285 1.03422 1.21384 0.99032 0.89759 1.02905 1.21561 0.97745 0.99385 0.97087 1.21519 1.01100 0.94673 0.97558 1.21528 0.96898 0.96659 1.00438 1.21248 1.00019 0.97371 0.94757 0.92863 0.93232 0.86716 1.00142 0.98765 0.92840 0.93124 0.91471 0.86455 0.89418 0.94978 0.89103 0.91457 0.90299 0.95028 0.87234 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 9.20 71.98 0.66 -2.68 16 2 C -0.41 -15.83 2.66 30.60 0.08 -15.75 16 3 H 0.11 4.01 5.96 -2.39 -0.01 4.00 16 4 C 0.04 2.39 4.10 29.85 0.12 2.51 16 5 C -0.53 -32.86 7.96 25.60 0.20 -32.66 16 6 H 0.05 3.08 5.77 -2.91 -0.02 3.06 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 8 N -0.93 -62.21 13.29 21.45 0.28 -61.93 16 9 Si 0.95 49.46 29.54 68.60 2.03 51.49 16 10 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.27 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.26 -12.43 7.11 99.48 0.71 -11.73 16 13 S 1.28 45.50 11.94 -56.49 -0.67 44.83 16 14 O -0.91 -48.53 16.40 -148.98 -2.44 -50.98 16 15 C -0.41 -12.64 2.54 30.59 0.08 -12.56 16 16 C -0.09 -1.97 5.02 30.59 0.15 -1.81 16 17 C -0.12 -2.37 5.92 30.60 0.18 -2.19 16 18 C -0.11 -1.91 5.92 30.60 0.18 -1.72 16 19 C -0.12 -2.66 5.92 30.58 0.18 -2.48 16 20 C -0.10 -2.52 5.21 30.58 0.16 -2.36 16 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 24 H -0.02 -1.29 7.78 -2.39 -0.02 -1.31 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 27 H 0.05 2.08 6.45 -2.39 -0.02 2.06 16 28 H 0.07 1.49 6.13 -2.39 -0.01 1.48 16 29 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.03 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -88.98 298.65 2.68 -86.31 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.02 Total: 1.61 kcal Atomic # 6 Polarization: -73.79 SS G_CDS: 2.47 Total: -71.33 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.28 Total: -61.93 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.44 Total: -50.98 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Atomic # 16 Polarization: 45.50 SS G_CDS: -0.67 Total: 44.83 kcal Total: -88.98 2.68 -86.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.145 kcal (2) G-P(sol) polarization free energy of solvation -88.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds