Wall clock time and date at job start Mon Mar 30 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46994 * 2 1 4 4 C 1.53002 * 109.47104 * 240.00683 * 2 1 3 5 5 C 1.50701 * 109.47253 * 174.99816 * 4 2 1 6 6 H 1.07998 * 119.99965 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99982 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99822 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47481 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46973 * 119.99802 * 9 7 5 12 12 H 1.48499 * 109.47004 * 239.99620 * 9 7 5 13 13 S 1.81398 * 109.47501 * 120.00688 * 2 1 3 14 14 O 1.42101 * 109.46852 * 59.84849 * 13 2 1 15 15 C 1.81405 * 102.99573 * 303.46218 * 13 2 1 16 16 C 1.53002 * 109.46911 * 183.77664 * 15 13 2 17 17 C 1.52999 * 109.46900 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47684 * 300.00358 * 17 16 15 19 19 C 1.53000 * 109.46874 * 59.99855 * 18 17 16 20 20 C 1.52995 * 109.47198 * 300.00171 * 19 18 17 21 21 H 1.08996 * 109.46921 * 305.51749 * 1 2 3 22 22 H 1.09002 * 109.47153 * 65.51891 * 1 2 3 23 23 H 1.09006 * 109.46690 * 185.51488 * 1 2 3 24 24 H 1.09000 * 109.47226 * 294.99510 * 4 2 1 25 25 H 1.09002 * 109.47270 * 54.99783 * 4 2 1 26 26 H 0.96999 * 120.00111 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46909 * 63.78240 * 15 13 2 28 28 H 1.09001 * 109.47273 * 300.00602 * 16 15 13 29 29 H 1.09004 * 109.46863 * 60.00549 * 16 15 13 30 30 H 1.09009 * 109.46702 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47026 * 60.01112 * 17 16 15 32 32 H 1.08999 * 109.46875 * 300.00048 * 18 17 16 33 33 H 1.08994 * 109.47179 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46846 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47212 * 60.00399 * 19 18 17 36 36 H 1.08999 * 109.47225 * 300.00219 * 20 19 18 37 37 H 1.09006 * 109.47523 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2303 -1.1923 -2.3586 8 7 3.5764 -1.8365 -3.3003 9 14 6.0920 -1.0611 -2.4369 10 1 6.5838 -0.2917 -1.2658 11 1 6.6854 -2.4223 -2.4200 12 1 6.4870 -0.3644 -3.6874 13 16 2.1348 -0.8553 1.4810 14 8 1.6582 -2.1940 1.4826 15 6 1.3519 0.0668 2.8329 16 6 1.8424 -0.4807 4.1747 17 6 1.1827 0.2974 5.3149 18 6 1.5517 1.7780 5.2026 19 6 1.0612 2.3254 3.8607 20 6 1.7210 1.5474 2.7205 21 1 -0.3633 0.5970 0.8364 22 1 -0.3633 0.4259 -0.9353 23 1 -0.3633 -1.0230 0.0988 24 1 1.7517 -1.7714 -1.2058 25 1 1.6053 -0.2615 -2.1370 26 1 4.0607 -2.2432 -4.0358 27 1 0.2694 -0.0440 2.7691 28 1 1.5799 -1.5356 4.2545 29 1 2.9249 -0.3699 4.2384 30 1 1.5318 -0.0930 6.2709 31 1 0.1001 0.1869 5.2514 32 1 2.6343 1.8883 5.2661 33 1 1.0821 2.3322 6.0151 34 1 1.3245 3.3801 3.7805 35 1 -0.0213 2.2151 3.7972 36 1 2.8035 1.6578 2.7841 37 1 1.3719 1.9377 1.7645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695887243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:54 Heat of formation + Delta-G solvation = -79.694586 kcal Electronic energy + Delta-G solvation = -16351.421843 eV Core-core repulsion = 13832.748837 eV Total energy + Delta-G solvation = -2518.673006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.13055 -34.96252 -34.51185 -32.16682 -30.70495 -30.61022 -27.48660 -23.37978 -22.67131 -22.53654 -20.46394 -19.76350 -16.75371 -16.40037 -15.85425 -15.05973 -14.55610 -14.26183 -14.18327 -14.05062 -13.25531 -13.18567 -12.40501 -12.23140 -12.11240 -11.93627 -11.82707 -11.54918 -11.31874 -11.19305 -11.08646 -10.83247 -10.68249 -10.52796 -10.34300 -10.29756 -9.99398 -9.55649 -9.15207 -8.87383 -8.40564 -7.32484 -6.04755 -4.10174 2.25096 3.30658 3.38446 3.40899 3.43990 4.41872 4.50101 4.73666 4.84267 4.95534 5.23303 5.32440 5.32888 5.48762 5.56399 5.60871 5.67748 5.69957 5.75984 5.79651 5.93489 6.02875 6.10697 6.16189 6.17315 6.27417 6.32697 6.39902 6.47683 6.63071 6.84324 7.58377 7.64905 7.91788 8.27352 8.96408 9.55439 11.06462 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.006496 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.875989 B = 4309.399158 C = 4519.680063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.387 4.387 3 H 0.111 0.889 4 C 0.043 3.957 5 C -0.534 4.534 6 H 0.067 0.933 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.284 1.284 13 S 1.256 4.744 14 O -0.852 6.852 15 C -0.429 4.429 16 C -0.092 4.092 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.092 4.092 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 8.717 14.524 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.506 4.506 3 H 0.130 0.870 4 C 0.005 3.995 5 C -0.573 4.573 6 H 0.085 0.915 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.210 1.210 13 S 1.455 4.545 14 O -0.847 6.847 15 C -0.544 4.544 16 C -0.130 4.130 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.131 4.131 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.189 7.800 14.430 16.446 hybrid contribution -1.438 -0.039 -0.469 1.513 sum -2.627 7.761 13.962 16.188 Atomic orbital electron populations 1.21867 0.95488 1.01319 1.01605 1.27410 0.99711 1.09438 1.14032 0.87045 1.18890 0.96017 0.95224 0.89399 1.21312 0.91551 1.35348 1.09075 0.91532 1.25039 0.98683 0.94854 0.95550 1.69979 1.35751 1.35126 1.11910 0.86554 0.85408 0.78015 0.78257 1.19073 1.20874 1.20985 1.70771 1.14077 0.84168 0.85468 1.93013 1.80501 1.26817 1.84414 1.27759 1.08773 1.05872 1.11979 1.21133 1.00604 0.99049 0.92254 1.21502 1.00399 0.95426 0.97918 1.21520 1.01185 0.95726 0.97107 1.21521 1.00149 0.98897 0.94864 1.21217 1.01391 0.91748 0.98712 0.93639 0.92288 0.93070 0.95971 0.95581 0.92844 0.90052 0.91962 0.90900 0.92219 0.92531 0.91728 0.92625 0.92057 0.92571 0.90504 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.85 37.16 0.33 -2.33 16 2 C -0.39 -7.65 2.16 -26.73 -0.06 -7.71 16 3 H 0.11 1.93 7.11 -51.92 -0.37 1.57 16 4 C 0.04 1.10 4.45 -27.88 -0.12 0.98 16 5 C -0.53 -14.20 8.53 -34.44 -0.29 -14.49 16 6 H 0.07 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 S 1.26 23.09 11.46 -107.50 -1.23 21.86 16 14 O -0.85 -20.78 18.12 -35.23 -0.64 -21.42 16 15 C -0.43 -6.03 2.07 -26.73 -0.06 -6.09 16 16 C -0.09 -1.16 5.21 -26.73 -0.14 -1.30 16 17 C -0.11 -1.22 5.92 -26.73 -0.16 -1.37 16 18 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 19 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 20 C -0.09 -1.07 4.99 -26.73 -0.13 -1.20 16 21 H 0.04 0.70 6.91 -51.93 -0.36 0.34 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.08 1.23 7.28 -51.92 -0.38 0.85 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -33.14 302.80 -9.11 -42.25 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.48 Total: -2.55 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: -1.05 Total: -34.54 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.64 Total: -21.42 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 23.09 SS G_CDS: -1.23 Total: 21.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.14 -9.11 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.440 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds