Wall clock time and date at job start Mon Mar 30 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46994 * 2 1 4 4 C 1.53002 * 109.47104 * 240.00683 * 2 1 3 5 5 C 1.50701 * 109.47253 * 174.99816 * 4 2 1 6 6 H 1.07998 * 119.99965 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99982 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99822 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47481 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46973 * 119.99802 * 9 7 5 12 12 H 1.48499 * 109.47004 * 239.99620 * 9 7 5 13 13 S 1.81398 * 109.47501 * 120.00688 * 2 1 3 14 14 O 1.42101 * 109.46852 * 59.84849 * 13 2 1 15 15 C 1.81405 * 102.99573 * 303.46218 * 13 2 1 16 16 C 1.53002 * 109.46911 * 183.77664 * 15 13 2 17 17 C 1.52999 * 109.46900 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47684 * 300.00358 * 17 16 15 19 19 C 1.53000 * 109.46874 * 59.99855 * 18 17 16 20 20 C 1.52995 * 109.47198 * 300.00171 * 19 18 17 21 21 H 1.08996 * 109.46921 * 305.51749 * 1 2 3 22 22 H 1.09002 * 109.47153 * 65.51891 * 1 2 3 23 23 H 1.09006 * 109.46690 * 185.51488 * 1 2 3 24 24 H 1.09000 * 109.47226 * 294.99510 * 4 2 1 25 25 H 1.09002 * 109.47270 * 54.99783 * 4 2 1 26 26 H 0.96999 * 120.00111 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46909 * 63.78240 * 15 13 2 28 28 H 1.09001 * 109.47273 * 300.00602 * 16 15 13 29 29 H 1.09004 * 109.46863 * 60.00549 * 16 15 13 30 30 H 1.09009 * 109.46702 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47026 * 60.01112 * 17 16 15 32 32 H 1.08999 * 109.46875 * 300.00048 * 18 17 16 33 33 H 1.08994 * 109.47179 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46846 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47212 * 60.00399 * 19 18 17 36 36 H 1.08999 * 109.47225 * 300.00219 * 20 19 18 37 37 H 1.09006 * 109.47523 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2303 -1.1923 -2.3586 8 7 3.5764 -1.8365 -3.3003 9 14 6.0920 -1.0611 -2.4369 10 1 6.5838 -0.2917 -1.2658 11 1 6.6854 -2.4223 -2.4200 12 1 6.4870 -0.3644 -3.6874 13 16 2.1348 -0.8553 1.4810 14 8 1.6582 -2.1940 1.4826 15 6 1.3519 0.0668 2.8329 16 6 1.8424 -0.4807 4.1747 17 6 1.1827 0.2974 5.3149 18 6 1.5517 1.7780 5.2026 19 6 1.0612 2.3254 3.8607 20 6 1.7210 1.5474 2.7205 21 1 -0.3633 0.5970 0.8364 22 1 -0.3633 0.4259 -0.9353 23 1 -0.3633 -1.0230 0.0988 24 1 1.7517 -1.7714 -1.2058 25 1 1.6053 -0.2615 -2.1370 26 1 4.0607 -2.2432 -4.0358 27 1 0.2694 -0.0440 2.7691 28 1 1.5799 -1.5356 4.2545 29 1 2.9249 -0.3699 4.2384 30 1 1.5318 -0.0930 6.2709 31 1 0.1001 0.1869 5.2514 32 1 2.6343 1.8883 5.2661 33 1 1.0821 2.3322 6.0151 34 1 1.3245 3.3801 3.7805 35 1 -0.0213 2.2151 3.7972 36 1 2.8035 1.6578 2.7841 37 1 1.3719 1.9377 1.7645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695887243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:54 Heat of formation + Delta-G solvation = -101.330512 kcal Electronic energy + Delta-G solvation = -16352.360047 eV Core-core repulsion = 13832.748837 eV Total energy + Delta-G solvation = -2519.611211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.04768 -36.71145 -36.34959 -34.09906 -31.69960 -31.53254 -29.39330 -25.31011 -23.70058 -23.47840 -22.14456 -20.67780 -18.49448 -18.25363 -17.15220 -16.60089 -16.26368 -15.48417 -15.15743 -15.08686 -14.77089 -14.48517 -13.98158 -13.76771 -13.59532 -13.32447 -13.30424 -13.00202 -12.87215 -12.65547 -12.28440 -12.21468 -12.11153 -11.94087 -11.59721 -11.46246 -11.23515 -11.12857 -10.92334 -10.61484 -10.28593 -8.88479 -8.15848 -6.29218 0.77032 1.49668 1.50977 1.64537 1.97109 2.47911 3.03783 3.20503 3.78804 3.85780 4.08020 4.13333 4.15871 4.32384 4.38453 4.46114 4.60138 4.62746 4.73332 4.75694 4.82972 5.00378 5.00897 5.07122 5.19309 5.24329 5.33418 5.38202 5.42843 5.44262 5.46106 5.54854 5.64801 5.81265 6.16894 6.88754 7.42442 8.97550 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.006496 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.875989 B = 4309.399158 C = 4519.680063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.384 4.384 3 H 0.147 0.853 4 C 0.046 3.954 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.007 4.007 8 N -0.943 5.943 9 Si 0.963 3.037 10 H -0.232 1.232 11 H -0.288 1.288 12 H -0.282 1.282 13 S 1.266 4.734 14 O -0.924 6.924 15 C -0.403 4.403 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.098 4.098 21 H 0.082 0.918 22 H 0.060 0.940 23 H 0.020 0.980 24 H -0.032 1.032 25 H -0.002 1.002 26 H 0.261 0.739 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 11.752 17.050 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.503 4.503 3 H 0.164 0.836 4 C 0.008 3.992 5 C -0.578 4.578 6 H 0.117 0.883 7 C -0.204 4.204 8 N -0.583 5.583 9 Si 0.787 3.213 10 H -0.154 1.154 11 H -0.214 1.214 12 H -0.208 1.208 13 S 1.470 4.530 14 O -0.920 6.920 15 C -0.522 4.522 16 C -0.138 4.138 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.137 4.137 21 H 0.101 0.899 22 H 0.079 0.921 23 H 0.039 0.961 24 H -0.014 1.014 25 H 0.016 0.984 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.412 10.828 16.936 20.106 hybrid contribution -2.041 -0.936 -1.151 2.523 sum -1.629 9.892 15.785 18.699 Atomic orbital electron populations 1.21850 0.94668 1.00188 1.03335 1.27316 1.00558 1.10465 1.11912 0.83569 1.18707 0.96557 0.92516 0.91371 1.21890 0.91941 1.34614 1.09404 0.88282 1.26168 1.04557 0.94491 0.95231 1.70164 1.38159 1.36930 1.13049 0.85413 0.78420 0.78028 0.79470 1.15435 1.21441 1.20791 1.69693 1.14830 0.82654 0.85826 1.92923 1.82300 1.30984 1.85762 1.27489 1.07631 1.07085 1.09975 1.21268 1.02313 0.98117 0.92089 1.21500 0.99666 0.96360 0.97481 1.21546 1.02210 0.94438 0.97218 1.21530 0.99619 0.99793 0.94362 1.21395 1.03257 0.89192 0.99837 0.89934 0.92070 0.96067 1.01351 0.98410 0.93000 0.91116 0.94225 0.88676 0.90678 0.93427 0.90363 0.91155 0.89997 0.93248 0.88152 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.85 71.98 0.64 -4.61 16 2 C -0.38 -15.11 2.16 30.59 0.07 -15.05 16 3 H 0.15 4.69 7.11 -2.39 -0.02 4.67 16 4 C 0.05 2.49 4.45 29.85 0.13 2.62 16 5 C -0.54 -28.81 8.53 25.60 0.22 -28.59 16 6 H 0.10 4.48 7.60 -2.91 -0.02 4.46 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 10 H -0.23 -8.77 7.11 99.48 0.71 -8.06 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 S 1.27 46.26 11.46 -56.49 -0.65 45.61 16 14 O -0.92 -47.18 18.12 -148.98 -2.70 -49.88 16 15 C -0.40 -10.47 2.07 30.59 0.06 -10.40 16 16 C -0.10 -2.29 5.21 30.59 0.16 -2.13 16 17 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 18 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 19 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 20 C -0.10 -1.86 4.99 30.59 0.15 -1.71 16 21 H 0.08 2.40 6.91 -2.39 -0.02 2.38 16 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.02 0.87 8.12 -2.38 -0.02 0.85 16 24 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.07 2.03 7.28 -2.39 -0.02 2.01 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.37 6.56 -2.38 -0.02 1.35 16 Total: -1.00 -77.05 302.80 2.41 -74.64 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.01 Total: 8.66 kcal Atomic # 6 Polarization: -67.22 SS G_CDS: 2.44 Total: -64.78 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.28 Total: -58.27 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.70 Total: -49.88 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 46.26 SS G_CDS: -0.65 Total: 45.61 kcal Total: -77.05 2.41 -74.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695887243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.692 kcal (2) G-P(sol) polarization free energy of solvation -77.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds