Wall clock time and date at job start Mon Mar 30 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86795 * 119.99873 * 2 1 4 4 H 1.48500 * 109.47270 * 275.39344 * 3 2 1 5 5 H 1.48496 * 109.47324 * 35.39596 * 3 2 1 6 6 H 1.48499 * 109.47109 * 155.39280 * 3 2 1 7 7 C 1.39885 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 342.14439 * 7 2 1 9 9 C 1.41026 * 120.00020 * 162.14161 * 7 2 1 10 10 C 1.40671 * 120.26519 * 329.76253 * 9 7 2 11 11 C 1.38007 * 119.76491 * 180.29201 * 10 9 7 12 12 N 1.39847 * 119.83952 * 179.75163 * 11 10 9 13 13 C 1.46496 * 120.00486 * 179.72502 * 12 11 10 14 14 H 1.09004 * 110.33957 * 35.83612 * 13 12 11 15 15 C 1.51095 * 110.38749 * 273.54887 * 13 12 11 16 16 C 1.30532 * 111.10539 * 257.50702 * 15 13 12 17 17 C 1.51099 * 111.10055 * 0.24448 * 16 15 13 18 18 C 1.54636 * 110.48757 * 158.18623 * 13 12 11 19 19 C 1.39600 * 120.32433 * 359.47646 * 11 10 9 20 20 C 1.38061 * 120.54520 * 0.27777 * 19 11 10 21 21 C 1.38738 * 120.22476 * 359.97438 * 20 19 11 22 22 N 1.38863 * 120.16222 * 179.97438 * 21 20 19 23 23 H 0.96999 * 119.99776 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.11754 * 0.04592 * 10 9 7 25 25 H 0.97013 * 119.99909 * 359.72556 * 12 11 10 26 26 H 1.08000 * 124.45175 * 77.52963 * 15 13 12 27 27 H 1.07996 * 124.44982 * 179.97438 * 16 15 13 28 28 H 1.09001 * 110.39070 * 102.13078 * 17 16 15 29 29 H 1.09003 * 110.38677 * 224.50439 * 17 16 15 30 30 H 1.09003 * 111.03619 * 212.26324 * 18 13 12 31 31 H 1.08996 * 111.03303 * 336.15583 * 18 13 12 32 32 H 1.07999 * 119.72873 * 180.25024 * 19 11 10 33 33 H 1.08005 * 119.88611 * 179.97438 * 20 19 11 34 34 H 0.96994 * 120.00233 * 0.02562 * 22 21 20 35 35 H 0.97002 * 119.99936 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3765 2.1122 -1.3939 5 1 1.5021 2.6170 0.8109 6 1 3.5929 1.4100 0.5830 7 6 2.0085 -1.2114 0.0005 8 1 1.5075 -2.1241 0.2877 9 6 3.3678 -1.2411 -0.3740 10 6 3.8667 -0.3131 -1.3060 11 6 5.1974 -0.3552 -1.6697 12 7 5.6939 0.5633 -2.6000 13 6 7.1071 0.5256 -2.9841 14 1 7.4637 -0.5039 -3.0165 15 6 7.9368 1.3399 -2.0189 16 6 8.2538 2.4974 -2.5322 17 6 7.6833 2.6504 -3.9230 18 6 7.3138 1.2106 -4.3550 19 6 6.0514 -1.3066 -1.1091 20 6 5.5768 -2.2203 -0.1894 21 6 4.2420 -2.2018 0.1886 22 7 3.7659 -3.1218 1.1134 23 1 -0.4850 0.8401 -0.0004 24 1 3.2100 0.4273 -1.7384 25 1 5.1025 1.2254 -2.9911 26 1 8.2295 1.0077 -1.0338 27 1 8.8425 3.2490 -2.0273 28 1 6.7958 3.2828 -3.9020 29 1 8.4319 3.0674 -4.5967 30 1 8.1285 0.7424 -4.9074 31 1 6.3933 1.2033 -4.9387 32 1 7.0920 -1.3284 -1.3976 33 1 6.2469 -2.9521 0.2373 34 1 4.3670 -3.7792 1.4971 35 1 2.8322 -3.1069 1.3757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698197928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:57 Heat of formation + Delta-G solvation = 42.010534 kcal Electronic energy + Delta-G solvation = -17189.955796 eV Core-core repulsion = 14573.409119 eV Total energy + Delta-G solvation = -2616.546677 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08755 -37.71613 -34.49589 -33.36661 -31.48879 -30.20876 -28.89390 -27.64469 -25.28010 -24.71104 -21.72780 -20.57341 -19.68113 -18.54133 -17.21874 -16.67691 -15.93022 -15.56816 -15.37331 -14.76014 -14.32240 -13.74827 -13.06561 -12.75056 -12.71050 -12.05760 -12.00336 -11.84013 -11.62981 -11.48020 -11.31667 -11.19498 -10.76072 -10.68526 -10.44866 -10.03607 -9.78054 -9.49140 -9.01659 -8.89104 -7.93295 -7.47808 -6.78830 -5.78434 -4.17886 2.37024 2.78749 3.04962 3.22299 3.39100 3.46561 4.13290 4.34885 4.68690 4.69592 4.81308 5.19136 5.30584 5.39313 5.55596 5.63656 5.74254 5.88731 5.92743 6.09629 6.15395 6.22892 6.42037 6.63549 6.76084 6.85708 7.01175 7.20635 7.30959 7.43981 7.56761 7.76668 8.00412 8.32555 8.48574 8.61052 8.70322 8.91577 9.09964 9.16332 10.24676 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.007883 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.503414 B = 3551.009132 C = 4381.750775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.451 4.451 8 H 0.086 0.914 9 C 0.081 3.919 10 C -0.272 4.272 11 C 0.199 3.801 12 N -0.751 5.751 13 C 0.178 3.822 14 H 0.079 0.921 15 C -0.162 4.162 16 C -0.174 4.174 17 C -0.099 4.099 18 C -0.133 4.133 19 C -0.255 4.255 20 C -0.144 4.144 21 C 0.098 3.902 22 N -0.886 5.886 23 H 0.281 0.719 24 H 0.098 0.902 25 H 0.387 0.613 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.376 0.624 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 3.172 -4.614 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.132 4.132 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.481 4.481 8 H 0.104 0.896 9 C 0.075 3.925 10 C -0.296 4.296 11 C 0.100 3.900 12 N -0.383 5.383 13 C 0.072 3.928 14 H 0.097 0.903 15 C -0.182 4.182 16 C -0.193 4.193 17 C -0.136 4.136 18 C -0.171 4.171 19 C -0.279 4.279 20 C -0.169 4.169 21 C -0.004 4.004 22 N -0.428 5.428 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.220 0.780 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.202 0.798 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 11.743 3.239 -4.666 13.045 hybrid contribution -0.082 0.893 0.229 0.926 sum 11.661 4.132 -4.437 13.143 Atomic orbital electron populations 1.69741 1.07946 1.29726 1.37473 1.26042 0.94607 1.01429 0.91107 0.86230 0.81206 0.79909 0.78295 1.20333 1.22676 1.16858 1.19078 0.93059 0.95649 1.40290 0.89599 1.17125 0.92599 0.91338 0.91425 1.20199 0.93748 1.07909 1.07785 1.17354 0.92277 0.89955 0.90438 1.44437 1.07121 1.37645 1.49134 1.20398 0.82690 0.98775 0.90935 0.90264 1.23887 0.97170 0.97073 1.00049 1.23197 1.01246 0.97746 0.97156 1.21386 1.00218 0.97284 0.94737 1.22732 1.02091 0.95550 0.96770 1.19644 0.97492 1.02759 1.07985 1.19799 0.93434 1.01388 1.02269 1.17752 0.91987 0.95555 0.95101 1.41861 1.12713 1.37886 1.50334 0.90927 0.88428 0.77958 0.86104 0.86367 0.91015 0.91494 0.90324 0.90439 0.88987 0.89201 0.79833 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.54 13.93 55.55 0.77 -21.76 16 2 C 0.08 2.28 5.40 -17.33 -0.09 2.18 16 3 Si 0.92 21.95 24.52 -169.99 -4.17 17.78 16 4 H -0.28 -6.45 6.72 56.52 0.38 -6.07 16 5 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.25 -6.13 6.85 56.52 0.39 -5.75 16 7 C -0.45 -12.25 8.91 -37.91 -0.34 -12.59 16 8 H 0.09 2.40 7.03 -52.48 -0.37 2.03 16 9 C 0.08 2.08 5.11 -106.66 -0.54 1.54 16 10 C -0.27 -6.73 6.98 -38.75 -0.27 -7.00 16 11 C 0.20 4.40 6.64 -83.78 -0.56 3.84 16 12 N -0.75 -13.80 5.29 -52.27 -0.28 -14.07 16 13 C 0.18 2.69 2.84 -68.03 -0.19 2.49 16 14 H 0.08 1.23 6.57 -51.93 -0.34 0.88 16 15 C -0.16 -2.35 10.39 -35.70 -0.37 -2.72 16 16 C -0.17 -2.19 10.77 -35.70 -0.38 -2.57 16 17 C -0.10 -1.12 6.82 -26.74 -0.18 -1.30 16 18 C -0.13 -1.59 6.80 -24.92 -0.17 -1.76 16 19 C -0.26 -5.45 9.21 -39.14 -0.36 -5.81 16 20 C -0.14 -3.13 9.86 -39.46 -0.39 -3.52 16 21 C 0.10 2.29 6.79 -83.23 -0.56 1.72 16 22 N -0.89 -17.73 8.98 32.75 0.29 -17.44 16 23 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 24 H 0.10 2.45 4.76 -52.48 -0.25 2.20 16 25 H 0.39 6.85 8.58 -40.81 -0.35 6.50 16 26 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.09 1.76 6.23 -52.49 -0.33 1.44 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.38 6.27 8.83 -40.82 -0.36 5.91 16 35 H 0.39 7.95 7.13 -40.82 -0.29 7.65 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -28.80 283.99 -7.93 -36.73 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -4.41 Total: 19.96 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -4.42 Total: -25.48 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.79 Total: -53.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.17 Total: 17.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.80 -7.93 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698197928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.739 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds