Wall clock time and date at job start Mon Mar 30 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86795 * 119.99873 * 2 1 4 4 H 1.48500 * 109.47270 * 275.39344 * 3 2 1 5 5 H 1.48496 * 109.47324 * 35.39596 * 3 2 1 6 6 H 1.48499 * 109.47109 * 155.39280 * 3 2 1 7 7 C 1.39885 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 342.14439 * 7 2 1 9 9 C 1.41026 * 120.00020 * 162.14161 * 7 2 1 10 10 C 1.40671 * 120.26519 * 329.76253 * 9 7 2 11 11 C 1.38007 * 119.76491 * 180.29201 * 10 9 7 12 12 N 1.39847 * 119.83952 * 179.75163 * 11 10 9 13 13 C 1.46496 * 120.00486 * 179.72502 * 12 11 10 14 14 H 1.09004 * 110.33957 * 35.83612 * 13 12 11 15 15 C 1.51095 * 110.38749 * 273.54887 * 13 12 11 16 16 C 1.30532 * 111.10539 * 257.50702 * 15 13 12 17 17 C 1.51099 * 111.10055 * 0.24448 * 16 15 13 18 18 C 1.54636 * 110.48757 * 158.18623 * 13 12 11 19 19 C 1.39600 * 120.32433 * 359.47646 * 11 10 9 20 20 C 1.38061 * 120.54520 * 0.27777 * 19 11 10 21 21 C 1.38738 * 120.22476 * 359.97438 * 20 19 11 22 22 N 1.38863 * 120.16222 * 179.97438 * 21 20 19 23 23 H 0.96999 * 119.99776 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.11754 * 0.04592 * 10 9 7 25 25 H 0.97013 * 119.99909 * 359.72556 * 12 11 10 26 26 H 1.08000 * 124.45175 * 77.52963 * 15 13 12 27 27 H 1.07996 * 124.44982 * 179.97438 * 16 15 13 28 28 H 1.09001 * 110.39070 * 102.13078 * 17 16 15 29 29 H 1.09003 * 110.38677 * 224.50439 * 17 16 15 30 30 H 1.09003 * 111.03619 * 212.26324 * 18 13 12 31 31 H 1.08996 * 111.03303 * 336.15583 * 18 13 12 32 32 H 1.07999 * 119.72873 * 180.25024 * 19 11 10 33 33 H 1.08005 * 119.88611 * 179.97438 * 20 19 11 34 34 H 0.96994 * 120.00233 * 0.02562 * 22 21 20 35 35 H 0.97002 * 119.99936 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3765 2.1122 -1.3939 5 1 1.5021 2.6170 0.8109 6 1 3.5929 1.4100 0.5830 7 6 2.0085 -1.2114 0.0005 8 1 1.5075 -2.1241 0.2877 9 6 3.3678 -1.2411 -0.3740 10 6 3.8667 -0.3131 -1.3060 11 6 5.1974 -0.3552 -1.6697 12 7 5.6939 0.5633 -2.6000 13 6 7.1071 0.5256 -2.9841 14 1 7.4637 -0.5039 -3.0165 15 6 7.9368 1.3399 -2.0189 16 6 8.2538 2.4974 -2.5322 17 6 7.6833 2.6504 -3.9230 18 6 7.3138 1.2106 -4.3550 19 6 6.0514 -1.3066 -1.1091 20 6 5.5768 -2.2203 -0.1894 21 6 4.2420 -2.2018 0.1886 22 7 3.7659 -3.1218 1.1134 23 1 -0.4850 0.8401 -0.0004 24 1 3.2100 0.4273 -1.7384 25 1 5.1025 1.2254 -2.9911 26 1 8.2295 1.0077 -1.0338 27 1 8.8425 3.2490 -2.0273 28 1 6.7958 3.2828 -3.9020 29 1 8.4319 3.0674 -4.5967 30 1 8.1285 0.7424 -4.9074 31 1 6.3933 1.2033 -4.9387 32 1 7.0920 -1.3284 -1.3976 33 1 6.2469 -2.9521 0.2373 34 1 4.3670 -3.7792 1.4971 35 1 2.8322 -3.1069 1.3757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698197928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:56 Heat of formation + Delta-G solvation = 23.344899 kcal Electronic energy + Delta-G solvation = -17190.765198 eV Core-core repulsion = 14573.409119 eV Total energy + Delta-G solvation = -2617.356079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42069 -39.25247 -36.06264 -35.28341 -33.05150 -32.06586 -29.89612 -29.05478 -26.76992 -26.51151 -23.48633 -21.87608 -21.22897 -19.68724 -19.00593 -18.20692 -17.59989 -16.97993 -16.85512 -16.29814 -15.93019 -14.97983 -14.96854 -14.43486 -14.23855 -13.80614 -13.61611 -13.25967 -13.02285 -12.79045 -12.60107 -12.44164 -12.38905 -12.24077 -11.80985 -11.72978 -11.57339 -11.30716 -10.90618 -9.94985 -9.49256 -9.36242 -8.78305 -7.49607 -6.15175 0.92075 1.19682 1.27729 1.32685 1.52413 1.54997 2.19112 2.75878 2.98233 3.68382 3.69485 3.70546 3.83959 4.24231 4.41781 4.41995 4.59951 4.66496 4.79731 4.92891 4.95161 4.96297 5.09601 5.18913 5.25307 5.39828 5.49798 5.62777 5.68312 5.80482 5.96770 6.02279 6.20434 6.34689 6.68046 6.88677 6.97133 7.13430 7.31572 7.58748 8.30668 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.007883 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.503414 B = 3551.009132 C = 4381.750775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.048 3.952 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.474 4.474 8 H 0.062 0.938 9 C 0.050 3.950 10 C -0.283 4.283 11 C 0.193 3.807 12 N -0.748 5.748 13 C 0.171 3.829 14 H 0.074 0.926 15 C -0.194 4.194 16 C -0.154 4.154 17 C -0.100 4.100 18 C -0.127 4.127 19 C -0.243 4.243 20 C -0.144 4.144 21 C 0.083 3.917 22 N -0.878 5.878 23 H 0.287 0.713 24 H 0.088 0.912 25 H 0.389 0.611 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.394 0.606 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 4.095 -5.687 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.045 3.955 10 C -0.307 4.307 11 C 0.092 3.908 12 N -0.380 5.380 13 C 0.066 3.934 14 H 0.092 0.908 15 C -0.214 4.214 16 C -0.173 4.173 17 C -0.137 4.137 18 C -0.164 4.164 19 C -0.267 4.267 20 C -0.168 4.168 21 C -0.020 4.020 22 N -0.421 5.421 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.222 0.778 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.222 0.778 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 14.735 4.159 -5.752 16.355 hybrid contribution -0.752 0.542 0.487 1.047 sum 13.983 4.701 -5.265 15.664 Atomic orbital electron populations 1.69772 1.08796 1.30583 1.40055 1.26592 0.95132 1.03563 0.91080 0.85422 0.79162 0.77416 0.78511 1.19435 1.21674 1.18666 1.19080 0.94141 0.95137 1.42133 0.92006 1.17309 0.92500 0.93082 0.92638 1.20289 0.94947 1.07579 1.07893 1.17460 0.91553 0.90813 0.91010 1.44579 1.08820 1.36626 1.47928 1.20649 0.80572 0.99191 0.92989 0.90766 1.23797 0.99239 0.98263 1.00108 1.23526 0.99350 0.96964 0.97468 1.21454 1.00897 0.96935 0.94403 1.22739 1.02955 0.95726 0.95030 1.20053 0.98622 1.01457 1.06551 1.20195 0.93101 1.01737 1.01766 1.17961 0.92576 0.95694 0.95752 1.41775 1.12942 1.37690 1.49674 0.90341 0.89417 0.77759 0.87010 0.84600 0.90991 0.88901 0.88255 0.90365 0.86360 0.86066 0.77793 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.00 13.93 21.82 0.30 -48.69 16 2 C 0.05 2.68 5.40 85.23 0.46 3.14 16 3 Si 0.97 46.21 24.52 68.60 1.68 47.89 16 4 H -0.27 -12.22 6.72 99.48 0.67 -11.56 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -13.08 6.85 99.48 0.68 -12.40 16 7 C -0.47 -26.75 8.91 23.35 0.21 -26.54 16 8 H 0.06 3.65 7.03 -2.91 -0.02 3.63 16 9 C 0.05 2.62 5.11 -21.18 -0.11 2.51 16 10 C -0.28 -13.97 6.98 22.81 0.16 -13.81 16 11 C 0.19 8.26 6.64 38.14 0.25 8.52 16 12 N -0.75 -26.07 5.29 -319.28 -1.69 -27.76 16 13 C 0.17 4.69 2.84 44.93 0.13 4.82 16 14 H 0.07 2.09 6.57 -2.39 -0.02 2.07 16 15 C -0.19 -5.11 10.39 26.25 0.27 -4.84 16 16 C -0.15 -3.32 10.77 26.25 0.28 -3.04 16 17 C -0.10 -1.86 6.82 30.59 0.21 -1.65 16 18 C -0.13 -2.57 6.80 31.76 0.22 -2.35 16 19 C -0.24 -9.79 9.21 22.56 0.21 -9.58 16 20 C -0.14 -5.89 9.86 22.35 0.22 -5.67 16 21 C 0.08 3.83 6.79 38.97 0.26 4.10 16 22 N -0.88 -34.78 8.98 -50.31 -0.45 -35.24 16 23 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 24 H 0.09 4.43 4.76 -2.91 -0.01 4.41 16 25 H 0.39 13.13 8.58 -92.70 -0.80 12.33 16 26 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 32 H 0.12 4.13 6.23 -2.91 -0.02 4.11 16 33 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.39 12.55 8.83 -92.71 -0.82 11.73 16 35 H 0.39 16.11 7.13 -92.71 -0.66 15.45 16 Total: -1.00 -62.69 283.99 1.41 -61.27 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -1.20 Total: 46.91 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 2.77 Total: -44.39 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -1.84 Total: -111.69 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.68 Total: 47.89 kcal Total: -62.69 1.41 -61.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698197928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.620 kcal (2) G-P(sol) polarization free energy of solvation -62.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds