Wall clock time and date at job start Mon Mar 30 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47443 * 2 1 4 4 H 1.09006 * 109.46986 * 305.75122 * 3 2 1 5 5 C 1.50699 * 109.47267 * 185.75354 * 3 2 1 6 6 H 1.08003 * 119.99639 * 243.39213 * 5 3 2 7 7 C 1.37875 * 120.00297 * 63.39252 * 5 3 2 8 8 N 1.31510 * 119.99872 * 192.85735 * 7 5 3 9 9 Si 1.86801 * 119.99942 * 12.85847 * 7 5 3 10 10 H 1.48502 * 109.46892 * 94.89618 * 9 7 5 11 11 H 1.48497 * 109.46976 * 214.89748 * 9 7 5 12 12 H 1.48503 * 109.47181 * 334.90030 * 9 7 5 13 13 S 1.81402 * 109.47085 * 65.75108 * 3 2 1 14 14 C 1.81401 * 102.99908 * 186.75175 * 13 3 2 15 15 H 1.08999 * 111.02170 * 309.19618 * 14 13 3 16 16 C 1.54950 * 111.12643 * 73.41321 * 14 13 3 17 17 O 1.43641 * 105.13763 * 154.36697 * 16 14 13 18 18 C 1.43242 * 109.96950 * 335.57015 * 17 16 14 19 19 C 1.53000 * 109.82910 * 242.20173 * 18 17 16 20 20 C 1.52995 * 109.83181 * 121.23006 * 18 17 16 21 21 C 1.54381 * 107.58867 * 1.71329 * 18 17 16 22 22 H 1.09001 * 109.47211 * 304.38999 * 1 2 3 23 23 H 1.09003 * 109.46962 * 64.38961 * 1 2 3 24 24 H 1.08996 * 109.47634 * 184.38903 * 1 2 3 25 25 H 1.09003 * 109.47146 * 239.99918 * 2 1 3 26 26 H 1.09000 * 109.46920 * 119.99821 * 2 1 3 27 27 H 0.97005 * 120.00088 * 179.97438 * 8 7 5 28 28 H 1.09007 * 110.30722 * 273.27910 * 16 14 13 29 29 H 1.09000 * 110.30774 * 35.34813 * 16 14 13 30 30 H 1.09008 * 109.46939 * 178.13388 * 19 18 17 31 31 H 1.08994 * 109.47030 * 298.13168 * 19 18 17 32 32 H 1.09001 * 109.47237 * 58.13682 * 19 18 17 33 33 H 1.09004 * 109.46710 * 301.86671 * 20 18 17 34 34 H 1.08996 * 109.47578 * 61.86395 * 20 18 17 35 35 H 1.08998 * 109.47441 * 181.87253 * 20 18 17 36 36 H 1.08997 * 110.84651 * 139.54784 * 21 18 17 37 37 H 1.09002 * 110.84970 * 262.96566 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8341 5 6 3.5402 1.4448 -0.1424 6 1 4.1575 1.8364 0.6526 7 6 4.1248 0.9471 -1.2876 8 7 5.4186 0.7129 -1.3171 9 14 3.0792 0.6055 -2.7974 10 1 3.1245 1.7787 -3.7067 11 1 3.6061 -0.5894 -3.5043 12 1 1.6757 0.3557 -2.3813 13 16 1.5794 2.2467 1.5594 14 6 2.0754 3.9709 1.2913 15 1 3.1047 4.0312 0.9378 16 6 1.1070 4.6853 0.3153 17 8 1.1997 6.0795 0.6483 18 6 1.6319 6.2306 2.0056 19 6 0.5483 6.9408 2.8193 20 6 2.9302 7.0389 2.0499 21 6 1.8749 4.8175 2.5778 22 1 -0.3634 0.5805 0.8480 23 1 -0.3633 0.4442 -0.9267 24 1 -0.3634 -1.0246 0.0786 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 5.8299 0.3624 -2.1227 28 1 1.4198 4.5211 -0.7159 29 1 0.0884 4.3265 0.4627 30 1 0.8692 7.0231 3.8579 31 1 0.3816 7.9374 2.4106 32 1 -0.3777 6.3680 2.7695 33 1 3.6921 6.5354 1.4547 34 1 2.7521 8.0349 1.6448 35 1 3.2715 7.1219 3.0818 36 1 2.7711 4.7989 3.1980 37 1 1.0079 4.4728 3.1415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703059059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:23 Heat of formation + Delta-G solvation = -65.474979 kcal Electronic energy + Delta-G solvation = -16371.474771 eV Core-core repulsion = 13853.418373 eV Total energy + Delta-G solvation = -2518.056398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51485 -34.86913 -33.02726 -32.05280 -31.56476 -28.02377 -27.29811 -25.63654 -22.85189 -21.86642 -20.54606 -19.89833 -17.00275 -16.37500 -15.80582 -15.43920 -14.82766 -14.11048 -13.78320 -13.61763 -13.36538 -13.00815 -12.80711 -12.57743 -12.23212 -12.18509 -11.91975 -11.58057 -11.43542 -11.20291 -11.09061 -10.92976 -10.70872 -10.51611 -10.21738 -10.13551 -9.68010 -9.35533 -9.28363 -8.84553 -8.62527 -6.77724 -6.22149 -4.22606 2.52724 3.17252 3.27846 3.30739 3.56346 4.03712 4.29003 4.68148 4.95560 4.99382 5.05919 5.23479 5.31331 5.55474 5.63471 5.74481 5.78449 5.86412 5.90040 5.91952 5.95198 5.99285 6.06222 6.14771 6.22095 6.33622 6.46332 6.48463 6.59516 6.66621 6.91452 7.15760 7.27278 7.47261 8.27352 8.82503 9.37348 10.88671 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.007484 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.607496 B = 3740.514111 C = 4145.697628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.077 3.923 4 H 0.038 0.962 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.856 3.144 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.246 1.246 13 S -0.267 6.267 14 C -0.083 4.083 15 H 0.107 0.893 16 C 0.062 3.938 17 O -0.376 6.376 18 C 0.102 3.898 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.121 4.121 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.266 0.734 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 7.880 5.454 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.052 4.052 4 H 0.056 0.944 5 C -0.566 4.566 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.682 3.318 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.170 1.170 13 S -0.037 6.037 14 C -0.212 4.212 15 H 0.126 0.874 16 C -0.017 4.017 17 O -0.296 6.296 18 C 0.062 3.938 19 C -0.209 4.209 20 C -0.210 4.210 21 C -0.159 4.159 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.082 7.503 6.130 13.280 hybrid contribution 0.392 0.016 -1.943 1.982 sum -8.690 7.519 4.187 12.231 Atomic orbital electron populations 1.21931 0.97499 1.00339 1.01537 1.21822 0.93610 0.97344 1.02099 1.21089 0.99953 0.94159 0.89988 0.94424 1.21091 0.87990 1.43054 1.04452 0.90007 1.24952 0.94774 0.94064 0.98435 1.69936 1.10640 1.43133 1.28469 0.87323 0.82493 0.78348 0.83593 1.20544 1.20960 1.17017 1.85877 1.81023 1.05087 1.31735 1.24588 1.03523 0.95244 0.97838 0.87430 1.23796 0.98504 0.80136 0.99255 1.88390 1.88425 1.24789 1.27964 1.22046 0.94062 0.94888 0.82816 1.22084 0.98593 1.00896 0.99306 1.22076 0.96607 1.00316 1.01987 1.23028 1.03327 0.92728 0.96864 0.92065 0.93610 0.93939 0.91453 0.91929 0.92417 0.89594 0.91433 0.91685 0.92131 0.92188 0.91780 0.92164 0.91673 0.89608 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.81 37.15 0.36 -2.39 16 2 C -0.11 -2.33 4.58 -26.73 -0.12 -2.45 16 3 C 0.08 1.74 1.74 -27.88 -0.05 1.69 16 4 H 0.04 0.86 6.95 -51.92 -0.36 0.50 16 5 C -0.53 -14.18 8.67 -34.44 -0.30 -14.48 16 6 H 0.08 2.43 7.96 -52.48 -0.42 2.01 16 7 C 0.08 2.28 5.36 -17.82 -0.10 2.19 16 8 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 9 Si 0.86 20.24 25.71 -169.99 -4.37 15.87 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.25 -5.41 5.30 56.52 0.30 -5.11 16 13 S -0.27 -5.34 19.29 -107.50 -2.07 -7.42 16 14 C -0.08 -1.49 3.45 -24.48 -0.08 -1.57 16 15 H 0.11 2.19 7.92 -51.93 -0.41 1.78 16 16 C 0.06 1.05 7.27 38.19 0.28 1.33 16 17 O -0.38 -6.22 10.68 -35.23 -0.38 -6.60 16 18 C 0.10 1.42 1.27 -89.90 -0.11 1.30 16 19 C -0.15 -1.72 8.75 37.16 0.32 -1.39 16 20 C -0.15 -1.90 8.73 37.16 0.32 -1.58 16 21 C -0.12 -1.77 5.58 -24.79 -0.14 -1.91 16 22 H 0.06 1.05 7.03 -51.93 -0.37 0.69 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.49 4.58 -51.93 -0.24 1.25 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.19 7.82 -51.93 -0.41 0.78 16 37 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 LS Contribution 302.08 15.07 4.55 4.55 Total: -1.00 -28.52 302.08 -7.59 -36.11 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.48 Total: 2.12 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 0.39 Total: -19.26 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.38 Total: -6.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.37 Total: 15.87 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.07 Total: -7.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.52 -7.59 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703059059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.369 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds