Wall clock time and date at job start Mon Mar 30 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47066 * 2 1 4 4 H 1.09007 * 109.47442 * 54.34010 * 3 2 1 5 5 C 1.50704 * 109.47188 * 174.33394 * 3 2 1 6 6 H 1.08005 * 119.99595 * 119.99632 * 5 3 2 7 7 C 1.37869 * 120.00361 * 300.00146 * 5 3 2 8 8 N 1.31513 * 120.00717 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99992 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47344 * 89.99716 * 9 7 5 11 11 H 1.48498 * 109.47361 * 209.99915 * 9 7 5 12 12 H 1.48506 * 109.47100 * 329.99809 * 9 7 5 13 13 S 1.81395 * 109.47172 * 294.33661 * 3 2 1 14 14 C 1.81406 * 103.00104 * 169.23899 * 13 3 2 15 15 H 1.09000 * 110.79983 * 305.47613 * 14 13 3 16 16 C 1.54991 * 110.90807 * 69.10677 * 14 13 3 17 17 O 1.44375 * 103.63113 * 155.18104 * 16 14 13 18 18 C 1.43889 * 106.90080 * 320.15766 * 17 16 14 19 19 C 1.52997 * 109.72953 * 266.88925 * 18 17 16 20 20 C 1.53002 * 110.07686 * 145.85328 * 18 17 16 21 21 C 1.54106 * 107.37394 * 26.27462 * 18 17 16 22 22 H 1.09005 * 109.47198 * 295.35221 * 1 2 3 23 23 H 1.08996 * 109.46983 * 55.34810 * 1 2 3 24 24 H 1.08994 * 109.47275 * 175.35237 * 1 2 3 25 25 H 1.08992 * 109.47485 * 240.00021 * 2 1 3 26 26 H 1.09008 * 109.47268 * 119.99955 * 2 1 3 27 27 H 0.96999 * 120.00592 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.61632 * 273.75822 * 16 14 13 29 29 H 1.08998 * 110.62067 * 36.60267 * 16 14 13 30 30 H 1.08997 * 109.47256 * 177.84335 * 19 18 17 31 31 H 1.09006 * 109.46949 * 297.83928 * 19 18 17 32 32 H 1.08993 * 109.47490 * 57.83456 * 19 18 17 33 33 H 1.09000 * 109.47031 * 301.96144 * 20 18 17 34 34 H 1.09009 * 109.46291 * 61.95156 * 20 18 17 35 35 H 1.08994 * 109.47384 * 181.95105 * 20 18 17 36 36 H 1.08996 * 110.48547 * 239.42902 * 21 18 17 37 37 H 1.08993 * 110.48896 * 116.77472 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9848 0.8350 5 6 3.5405 1.4448 0.1403 6 1 4.1542 1.8864 -0.6310 7 6 4.1297 0.8832 1.2530 8 7 5.4392 0.8848 1.3753 9 14 3.0682 0.1200 2.5873 10 1 2.8496 -1.3172 2.2843 11 1 3.7517 0.2510 3.8991 12 1 1.7593 0.8196 2.6391 13 16 1.5771 2.2475 -1.5582 14 6 1.9600 3.9928 -1.2454 15 1 1.4564 4.3442 -0.3449 16 6 3.4908 4.2139 -1.1452 17 8 3.6579 5.6034 -1.4996 18 6 2.7499 5.8707 -2.5834 19 6 3.4694 5.6770 -3.9197 20 6 2.2176 7.3016 -2.4819 21 6 1.5850 4.8688 -2.4655 22 1 -0.3634 0.4400 0.9287 23 1 -0.3633 0.5843 -0.8454 24 1 -0.3633 -1.0242 -0.0833 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 5.8538 0.4894 2.1580 28 1 3.8390 4.0327 -0.1283 29 1 4.0184 3.5718 -1.8504 30 1 2.7681 5.8431 -4.7374 31 1 4.2917 6.3886 -3.9961 32 1 3.8612 4.6616 -3.9776 33 1 1.7222 7.4376 -1.5206 34 1 3.0467 8.0043 -2.5661 35 1 1.5052 7.4822 -3.2868 36 1 1.5141 4.2586 -3.3659 37 1 0.6471 5.3938 -2.2844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703059063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:26 Heat of formation + Delta-G solvation = -79.096897 kcal Electronic energy + Delta-G solvation = -16478.578503 eV Core-core repulsion = 13959.931414 eV Total energy + Delta-G solvation = -2518.647089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71416 -36.76434 -34.08132 -34.02372 -32.87737 -29.83697 -28.29012 -26.77259 -24.76998 -23.27417 -22.31528 -21.02255 -18.95057 -17.64531 -17.40350 -16.95670 -16.18434 -15.92457 -15.39351 -14.96870 -14.59362 -14.40936 -14.24218 -13.97203 -13.91517 -13.35608 -13.13191 -12.97885 -12.74211 -12.69028 -12.40136 -12.38545 -12.25430 -11.91006 -11.79966 -11.57756 -11.36668 -11.21507 -10.74583 -10.65607 -10.52389 -8.44866 -8.27431 -6.38857 0.96114 1.26583 1.32345 1.41207 1.83960 2.27062 2.94406 3.03891 3.48604 3.70674 3.91974 4.07278 4.13855 4.22780 4.24127 4.27781 4.41653 4.64252 4.71674 4.74591 4.79239 4.81073 4.91101 4.98109 4.99964 5.00354 5.05870 5.07115 5.25995 5.26917 5.39454 5.40599 5.51750 6.00361 6.16083 6.67215 7.24663 8.81617 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.007778 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.873135 B = 3599.231988 C = 4197.221759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.062 3.938 4 H 0.038 0.962 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.247 1.247 13 S -0.254 6.254 14 C -0.079 4.079 15 H 0.090 0.910 16 C 0.076 3.924 17 O -0.392 6.392 18 C 0.085 3.915 19 C -0.160 4.160 20 C -0.136 4.136 21 C -0.112 4.112 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.266 0.734 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 7.718 -7.030 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.066 4.066 4 H 0.056 0.944 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.176 4.176 8 N -0.577 5.577 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.227 1.227 12 H -0.170 1.170 13 S -0.025 6.025 14 C -0.208 4.208 15 H 0.109 0.891 16 C -0.003 4.003 17 O -0.312 6.312 18 C 0.045 3.955 19 C -0.217 4.217 20 C -0.193 4.193 21 C -0.150 4.150 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.128 7.359 -7.772 15.441 hybrid contribution 0.906 -0.381 2.029 2.254 sum -10.223 6.978 -5.743 13.645 Atomic orbital electron populations 1.21867 0.93925 1.02382 1.02426 1.21698 0.96874 0.95823 1.00918 1.21122 0.97556 0.95775 0.92188 0.94401 1.21454 0.90013 1.38438 1.05983 0.92445 1.25768 0.95756 0.95981 1.00066 1.70009 1.10942 1.46488 1.30286 0.86021 0.79844 0.79836 0.77947 1.19073 1.22711 1.17039 1.85716 1.83952 1.04506 1.28311 1.24524 0.98782 0.94761 1.02769 0.89112 1.23720 0.94017 0.82020 1.00518 1.88902 1.62510 1.26694 1.53086 1.22468 0.88524 0.96857 0.87624 1.22248 1.01512 1.01633 0.96353 1.21900 1.01585 0.92547 1.03316 1.22916 0.99813 0.95917 0.96371 0.92938 0.91092 0.91362 0.92169 0.93413 0.92432 0.90681 0.93050 0.89008 0.91802 0.93952 0.92186 0.91881 0.88548 0.89461 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.82 71.98 0.71 -4.08 16 2 C -0.11 -4.68 4.89 30.59 0.15 -4.53 16 3 C 0.06 2.82 1.76 29.85 0.05 2.87 16 4 H 0.04 1.74 7.20 -2.39 -0.02 1.73 16 5 C -0.52 -28.26 7.69 25.60 0.20 -28.06 16 6 H 0.06 3.44 6.10 -2.91 -0.02 3.42 16 7 C 0.02 1.36 5.45 84.65 0.46 1.82 16 8 N -0.94 -57.16 13.96 21.44 0.30 -56.86 16 9 Si 0.94 43.53 24.41 68.60 1.67 45.20 16 10 H -0.26 -11.75 6.82 99.48 0.68 -11.07 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.25 -10.61 6.53 99.48 0.65 -9.96 16 13 S -0.25 -9.89 19.23 -56.49 -1.09 -10.98 16 14 C -0.08 -2.80 3.63 31.89 0.12 -2.68 16 15 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 16 C 0.08 3.10 5.39 72.66 0.39 3.50 16 17 O -0.39 -14.49 10.87 -148.98 -1.62 -16.11 16 18 C 0.09 2.32 1.20 -10.42 -0.01 2.31 16 19 C -0.16 -3.91 8.60 71.98 0.62 -3.29 16 20 C -0.14 -2.80 8.68 71.98 0.62 -2.17 16 21 C -0.11 -3.00 5.88 31.59 0.19 -2.82 16 22 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.07 2.20 7.02 -2.39 -0.02 2.18 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 2.05 3.22 -2.38 -0.01 2.05 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.07 3.58 7.30 -2.39 -0.02 3.56 16 29 H 0.05 2.30 7.39 -2.39 -0.02 2.28 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 2.29 7.37 -2.39 -0.02 2.27 16 37 H 0.11 2.30 7.70 -2.39 -0.02 2.29 16 Total: -1.00 -62.33 294.91 3.70 -58.63 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.94 Total: 17.26 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.49 Total: -37.14 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.62 Total: -16.11 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.20 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.09 Total: -10.98 kcal Total: -62.33 3.70 -58.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703059063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.467 kcal (2) G-P(sol) polarization free energy of solvation -62.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds