Wall clock time and date at job start Mon Mar 30 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 H 1.09007 * 109.46907 * 305.47484 * 3 2 1 5 5 C 1.50697 * 109.47361 * 185.47669 * 3 2 1 6 6 H 1.08004 * 120.00034 * 240.00128 * 5 3 2 7 7 C 1.37878 * 120.00098 * 59.99342 * 5 3 2 8 8 N 1.31506 * 119.99918 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99990 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47004 * 269.99931 * 9 7 5 11 11 H 1.48498 * 109.47010 * 29.99331 * 9 7 5 12 12 H 1.48496 * 109.47335 * 149.99519 * 9 7 5 13 13 S 1.81404 * 109.47144 * 65.47248 * 3 2 1 14 14 C 1.81406 * 102.99855 * 190.86375 * 13 3 2 15 15 H 1.08991 * 110.80282 * 54.35745 * 14 13 3 16 16 C 1.55000 * 110.90565 * 290.73266 * 14 13 3 17 17 O 1.44378 * 103.49038 * 204.78141 * 16 14 13 18 18 C 1.43743 * 106.97637 * 40.05585 * 17 16 14 19 19 C 1.53006 * 109.87669 * 92.91481 * 18 17 16 20 20 C 1.52995 * 109.88354 * 213.91588 * 18 17 16 21 21 C 1.54159 * 107.30163 * 333.46289 * 18 17 16 22 22 H 1.09007 * 109.47501 * 294.69994 * 1 2 3 23 23 H 1.09003 * 109.47453 * 54.70245 * 1 2 3 24 24 H 1.09002 * 109.47245 * 174.70058 * 1 2 3 25 25 H 1.08997 * 109.47230 * 239.99975 * 2 1 3 26 26 H 1.08998 * 109.46993 * 119.99643 * 2 1 3 27 27 H 0.97001 * 119.99805 * 180.02562 * 8 7 5 28 28 H 1.09001 * 110.62076 * 323.27584 * 16 14 13 29 29 H 1.08994 * 110.61976 * 86.12000 * 16 14 13 30 30 H 1.08996 * 109.47028 * 61.45327 * 19 18 17 31 31 H 1.09002 * 109.47019 * 181.45684 * 19 18 17 32 32 H 1.08998 * 109.46900 * 301.45096 * 19 18 17 33 33 H 1.09002 * 109.47189 * 58.54110 * 20 18 17 34 34 H 1.08998 * 109.47864 * 178.54820 * 20 18 17 35 35 H 1.09006 * 109.47089 * 298.54955 * 20 18 17 36 36 H 1.09004 * 110.52141 * 243.39985 * 21 18 17 37 37 H 1.09003 * 110.48735 * 120.72821 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 -0.8370 5 6 3.5408 1.4448 -0.1356 6 1 4.1522 1.8872 0.6370 7 6 4.1336 0.8819 -1.2459 8 7 5.4433 0.8834 -1.3640 9 14 3.0762 0.1170 -2.5825 10 1 2.8568 -1.3198 -2.2785 11 1 1.7674 0.8164 -2.6390 12 1 3.7636 0.2466 -3.8924 13 16 1.5721 2.2493 1.5560 14 6 1.9531 3.9947 1.2412 15 1 1.4535 4.3431 0.3374 16 6 3.4840 4.2186 1.1482 17 8 3.6430 5.6098 1.5000 18 6 2.7328 5.8762 2.5802 19 6 3.4461 5.6860 3.9204 20 6 2.2016 7.3069 2.4722 21 6 1.5695 4.8720 2.4578 22 1 -0.3634 0.4294 0.9337 23 1 -0.3634 0.5938 -0.8387 24 1 -0.3634 -1.0233 -0.0949 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8603 0.4877 -2.1453 28 1 4.0092 3.5806 1.8590 29 1 3.8381 4.0338 0.1340 30 1 4.2743 6.3907 3.9943 31 1 2.7434 5.8644 4.7344 32 1 3.8284 4.6675 3.9871 33 1 1.7020 7.4376 1.5123 34 1 1.4929 7.4933 3.2791 35 1 3.0317 8.0094 2.5483 36 1 0.6315 5.3947 2.2705 37 1 1.4948 4.2631 3.3588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703059064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:28 Heat of formation + Delta-G solvation = -79.077246 kcal Electronic energy + Delta-G solvation = -16477.415386 eV Core-core repulsion = 13958.769149 eV Total energy + Delta-G solvation = -2518.646236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72446 -36.76443 -34.07601 -34.02262 -32.88047 -29.83668 -28.29153 -26.77611 -24.76918 -23.27451 -22.31351 -21.02473 -18.95231 -17.64767 -17.39642 -16.95609 -16.19261 -15.93166 -15.39812 -14.96995 -14.59414 -14.39602 -14.23865 -13.96188 -13.91010 -13.35841 -13.12659 -12.97868 -12.73248 -12.69584 -12.41408 -12.38749 -12.25634 -11.92371 -11.80414 -11.57418 -11.36297 -11.20999 -10.74481 -10.65661 -10.51991 -8.45043 -8.27604 -6.38845 0.96373 1.26681 1.32500 1.41359 1.84217 2.27141 2.94408 3.03853 3.48851 3.70703 3.91882 4.07133 4.13817 4.22757 4.23884 4.27210 4.41495 4.64229 4.71634 4.74820 4.79228 4.81063 4.91076 4.98162 4.99947 5.01068 5.05599 5.07183 5.25836 5.26979 5.38665 5.40456 5.51576 6.01071 6.16150 6.67224 7.24651 8.81623 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.028575 B = 0.007773 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.647440 B = 3601.199588 C = 4198.439769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.063 3.937 4 H 0.038 0.962 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.247 1.247 12 H -0.299 1.299 13 S -0.255 6.255 14 C -0.079 4.079 15 H 0.090 0.910 16 C 0.076 3.924 17 O -0.391 6.391 18 C 0.085 3.915 19 C -0.160 4.160 20 C -0.136 4.136 21 C -0.112 4.112 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 7.710 6.959 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.066 4.066 4 H 0.056 0.944 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.176 4.176 8 N -0.577 5.577 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.170 1.170 12 H -0.227 1.227 13 S -0.026 6.026 14 C -0.208 4.208 15 H 0.109 0.891 16 C -0.003 4.003 17 O -0.312 6.312 18 C 0.046 3.954 19 C -0.218 4.218 20 C -0.193 4.193 21 C -0.150 4.150 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.150 7.351 7.702 15.417 hybrid contribution 0.909 -0.378 -2.016 2.244 sum -10.241 6.973 5.685 13.632 Atomic orbital electron populations 1.21835 0.93895 1.02060 1.02547 1.21702 0.96880 0.95826 1.00919 1.21132 0.97543 0.95732 0.92193 0.94400 1.21454 0.89997 1.38392 1.06063 0.92465 1.25771 0.95744 0.95981 1.00080 1.70009 1.10841 1.46475 1.30389 0.86018 0.79827 0.79840 0.77948 1.19065 1.17035 1.22713 1.85728 1.83914 1.04451 1.28489 1.24526 0.98796 0.94744 1.02768 0.89131 1.23724 0.94046 0.81957 1.00548 1.88870 1.62509 1.26536 1.53260 1.22453 0.88471 0.96832 0.87687 1.22249 1.01554 1.01636 0.96317 1.21898 1.01581 0.92560 1.03310 1.22926 0.99803 0.95889 0.96406 0.91253 0.92903 0.91459 0.93406 0.92163 0.92433 0.93048 0.90634 0.91813 0.88992 0.93940 0.92185 0.88567 0.91885 0.87503 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.65 71.98 0.69 -4.00 16 2 C -0.11 -4.69 4.89 30.59 0.15 -4.54 16 3 C 0.06 2.83 1.76 29.85 0.05 2.89 16 4 H 0.04 1.74 7.20 -2.39 -0.02 1.73 16 5 C -0.52 -28.27 7.69 25.60 0.20 -28.07 16 6 H 0.06 3.43 6.12 -2.91 -0.02 3.41 16 7 C 0.02 1.35 5.45 84.66 0.46 1.82 16 8 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 9 Si 0.94 43.51 24.41 68.60 1.67 45.18 16 10 H -0.26 -11.73 6.82 99.48 0.68 -11.05 16 11 H -0.25 -10.60 6.53 99.48 0.65 -9.95 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 13 S -0.26 -9.94 19.39 -56.49 -1.10 -11.03 16 14 C -0.08 -2.80 3.63 31.90 0.12 -2.68 16 15 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 16 C 0.08 3.10 5.41 72.67 0.39 3.50 16 17 O -0.39 -14.48 10.86 -148.98 -1.62 -16.09 16 18 C 0.09 2.33 1.19 -10.40 -0.01 2.32 16 19 C -0.16 -3.91 8.61 71.98 0.62 -3.29 16 20 C -0.14 -2.80 8.68 71.98 0.62 -2.18 16 21 C -0.11 -3.01 5.89 31.61 0.19 -2.82 16 22 H 0.07 2.12 7.35 -2.38 -0.02 2.11 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 2.05 3.22 -2.39 -0.01 2.05 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 28 H 0.05 2.30 7.42 -2.39 -0.02 2.28 16 29 H 0.08 3.60 7.30 -2.39 -0.02 3.58 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.11 2.31 7.71 -2.38 -0.02 2.29 16 37 H 0.09 2.29 7.37 -2.39 -0.02 2.28 16 Total: -1.00 -62.30 295.32 3.68 -58.62 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.94 Total: 17.23 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.48 Total: -37.06 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.30 Total: -56.84 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.62 Total: -16.09 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.18 kcal Atomic # 16 Polarization: -9.94 SS G_CDS: -1.10 Total: -11.03 kcal Total: -62.30 3.68 -58.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703059064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.460 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds