Wall clock time and date at job start Mon Mar 30 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46763 * 300.00374 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00361 * 3 2 1 7 7 C 1.37880 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99920 * 174.63560 * 7 2 1 9 9 C 1.50703 * 120.00091 * 354.62194 * 7 2 1 10 10 H 1.08998 * 109.47046 * 334.32728 * 9 7 2 11 11 C 1.50704 * 109.46526 * 94.32379 * 9 7 2 12 12 C 1.38232 * 120.00064 * 73.80224 * 11 9 7 13 13 C 1.38243 * 120.00041 * 179.78738 * 12 11 9 14 14 C 1.38228 * 119.99715 * 0.43588 * 13 12 11 15 15 C 1.38240 * 120.00081 * 359.81816 * 14 13 12 16 16 C 1.38227 * 119.99882 * 359.97438 * 15 14 13 17 17 N 1.46890 * 109.47343 * 214.31941 * 9 7 2 18 18 C 1.46936 * 111.00411 * 56.35547 * 17 9 7 19 19 C 1.50303 * 109.88896 * 172.94762 * 18 17 9 20 20 C 1.29986 * 122.65669 * 343.34881 * 19 18 17 21 21 C 1.50302 * 122.66372 * 0.35198 * 20 19 18 22 22 N 1.45742 * 111.00354 * 179.15740 * 17 9 7 23 23 H 0.97006 * 120.00270 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99874 * 359.97438 * 12 11 9 25 25 H 1.07997 * 119.99623 * 180.27279 * 13 12 11 26 26 H 1.08004 * 120.00133 * 179.83358 * 14 13 12 27 27 H 1.08003 * 119.99562 * 179.97438 * 15 14 13 28 28 H 1.08007 * 119.99448 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.40017 * 52.81710 * 18 17 9 30 30 H 1.09002 * 109.32750 * 293.03298 * 18 17 9 31 31 H 1.08002 * 118.66753 * 163.32200 * 19 18 17 32 32 H 1.08003 * 118.66482 * 180.33356 * 20 19 18 33 33 H 1.09006 * 109.40085 * 223.20642 * 21 20 19 34 34 H 1.08995 * 109.33212 * 103.41238 * 21 20 19 35 35 H 1.00901 * 110.99600 * 44.24425 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1961 -0.0880 9 6 1.2559 -2.4964 0.1212 10 1 0.3112 -2.3256 0.6374 11 6 0.9840 -3.0498 -1.2539 12 6 2.0115 -3.6113 -1.9886 13 6 1.7612 -4.1229 -3.2482 14 6 0.4853 -4.0649 -3.7767 15 6 -0.5412 -3.4986 -3.0441 16 6 -0.2918 -2.9909 -1.7829 17 7 2.0644 -3.4565 0.8843 18 6 2.4228 -2.9133 2.2017 19 6 3.0985 -3.9736 3.0253 20 6 3.0340 -5.2380 2.7306 21 6 2.2841 -5.7550 1.5349 22 7 1.3620 -4.7240 1.0393 23 1 -0.4851 0.8401 0.0004 24 1 3.0093 -3.6530 -1.5772 25 1 2.5631 -4.5656 -3.8204 26 1 0.2902 -4.4621 -4.7619 27 1 -1.5381 -3.4529 -3.4573 28 1 -1.0939 -2.5489 -1.2104 29 1 1.5203 -2.5781 2.7128 30 1 3.1001 -2.0692 2.0718 31 1 3.6608 -3.6727 3.8969 32 1 3.5399 -5.9456 3.3707 33 1 1.7172 -6.6417 1.8187 34 1 2.9932 -6.0146 0.7490 35 1 0.9341 -5.0088 0.1710 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705136299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:16 Heat of formation + Delta-G solvation = 79.123476 kcal Electronic energy + Delta-G solvation = -17699.735411 eV Core-core repulsion = 15084.798072 eV Total energy + Delta-G solvation = -2614.937339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.66859 -37.36923 -34.08013 -32.05617 -31.19677 -30.06883 -29.93344 -26.66882 -24.26954 -23.61611 -22.18946 -21.54211 -19.81055 -16.99832 -16.63466 -16.44509 -15.77511 -14.68061 -14.55499 -14.21067 -13.88958 -13.74881 -13.20285 -12.82879 -12.57488 -12.47686 -12.09857 -11.88947 -11.67576 -11.06064 -10.97904 -10.73347 -10.63299 -10.29989 -10.17522 -9.93083 -9.50064 -9.20447 -8.62871 -8.32798 -8.03180 -7.68008 -6.74835 -6.18005 -4.22602 2.30333 2.32198 2.75288 3.22496 3.31117 3.35100 4.16987 4.40680 4.76195 5.17402 5.38518 5.49174 5.55394 5.66921 5.77705 5.86782 5.94737 6.07339 6.28818 6.43907 6.49621 6.54076 6.63368 6.71468 6.89536 6.94019 7.01237 7.26175 7.31830 7.34431 7.39813 7.49493 7.72184 7.82588 7.84504 8.04551 8.22230 8.59156 8.90200 9.41708 10.88358 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.012207 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.568195 B = 2293.238838 C = 3775.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.228 3.772 10 H 0.047 0.953 11 C -0.026 4.026 12 C -0.109 4.109 13 C -0.136 4.136 14 C -0.151 4.151 15 C -0.131 4.131 16 C -0.107 4.107 17 N -0.375 5.375 18 C 0.098 3.902 19 C -0.140 4.140 20 C -0.169 4.169 21 C 0.094 3.906 22 N -0.551 5.551 23 H 0.264 0.736 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -7.746 0.011 8.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.122 3.878 10 H 0.065 0.935 11 C -0.027 4.027 12 C -0.127 4.127 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.149 4.149 16 C -0.126 4.126 17 N -0.191 5.191 18 C -0.031 4.031 19 C -0.159 4.159 20 C -0.188 4.188 21 C -0.035 4.035 22 N -0.273 5.273 23 H 0.074 0.926 24 H 0.134 0.866 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.389 -7.563 0.389 7.941 hybrid contribution 0.204 0.992 -0.486 1.123 sum 2.594 -6.571 -0.097 7.065 Atomic orbital electron populations 1.69945 1.06003 1.27060 1.48555 1.24989 0.94910 0.99436 0.94264 0.86444 0.80270 0.83153 0.77680 1.19453 1.20941 1.20812 1.20889 0.93664 0.88487 1.50924 0.91614 1.18612 0.94426 0.88373 0.86379 0.93468 1.20440 0.91718 0.91848 0.98739 1.20963 0.99357 0.98625 0.93763 1.20982 0.96281 1.01872 0.96296 1.20816 0.93682 1.03103 0.99346 1.20982 0.98235 1.00300 0.95399 1.21097 0.97379 0.98712 0.95406 1.66057 1.38878 0.99424 1.14764 1.20828 0.98670 0.95140 0.88412 1.22452 0.98992 0.95278 0.99136 1.22054 1.01643 0.96364 0.98726 1.20725 0.94178 0.93876 0.94767 1.63952 1.28778 1.00368 1.34156 0.92635 0.86636 0.87716 0.87794 0.87562 0.86276 0.93650 0.88703 0.88090 0.88261 0.90750 0.94388 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 12.85 55.43 0.71 -23.29 16 2 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.97 6.96 -34.44 -0.24 -13.21 16 8 H 0.07 1.73 7.80 -52.49 -0.41 1.32 16 9 C 0.23 5.49 1.94 -70.02 -0.14 5.35 16 10 H 0.05 1.29 7.21 -51.93 -0.37 0.92 16 11 C -0.03 -0.59 3.51 -104.62 -0.37 -0.95 16 12 C -0.11 -2.25 9.15 -39.58 -0.36 -2.61 16 13 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 14 C -0.15 -2.66 10.05 -39.58 -0.40 -3.05 16 15 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 16 C -0.11 -2.32 9.67 -39.59 -0.38 -2.70 16 17 N -0.37 -8.03 4.38 -110.65 -0.48 -8.52 16 18 C 0.10 2.00 5.47 -5.15 -0.03 1.97 16 19 C -0.14 -2.39 10.01 -35.93 -0.36 -2.75 16 20 C -0.17 -2.69 10.01 -35.93 -0.36 -3.05 16 21 C 0.09 1.54 7.04 -5.15 -0.04 1.50 16 22 N -0.55 -10.67 7.00 -11.56 -0.08 -10.75 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.12 2.43 7.91 -52.48 -0.42 2.01 16 25 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 28 H 0.12 2.71 8.00 -52.48 -0.42 2.29 16 29 H 0.05 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.09 2.00 7.24 -51.93 -0.38 1.62 16 31 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.10 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.34 6.63 7.35 -174.37 -1.28 5.35 16 LS Contribution 292.94 15.07 4.41 4.41 Total: -1.00 -27.17 292.94 -9.81 -36.99 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.79 Total: 9.10 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -3.56 Total: -23.53 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.15 Total: -42.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.17 -9.81 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705136299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.111 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds