Wall clock time and date at job start Mon Mar 30 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46763 * 300.00374 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00361 * 3 2 1 7 7 C 1.37880 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99920 * 174.63560 * 7 2 1 9 9 C 1.50703 * 120.00091 * 354.62194 * 7 2 1 10 10 H 1.08998 * 109.47046 * 334.32728 * 9 7 2 11 11 C 1.50704 * 109.46526 * 94.32379 * 9 7 2 12 12 C 1.38232 * 120.00064 * 73.80224 * 11 9 7 13 13 C 1.38243 * 120.00041 * 179.78738 * 12 11 9 14 14 C 1.38228 * 119.99715 * 0.43588 * 13 12 11 15 15 C 1.38240 * 120.00081 * 359.81816 * 14 13 12 16 16 C 1.38227 * 119.99882 * 359.97438 * 15 14 13 17 17 N 1.46890 * 109.47343 * 214.31941 * 9 7 2 18 18 C 1.46936 * 111.00411 * 56.35547 * 17 9 7 19 19 C 1.50303 * 109.88896 * 172.94762 * 18 17 9 20 20 C 1.29986 * 122.65669 * 343.34881 * 19 18 17 21 21 C 1.50302 * 122.66372 * 0.35198 * 20 19 18 22 22 N 1.45742 * 111.00354 * 179.15740 * 17 9 7 23 23 H 0.97006 * 120.00270 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99874 * 359.97438 * 12 11 9 25 25 H 1.07997 * 119.99623 * 180.27279 * 13 12 11 26 26 H 1.08004 * 120.00133 * 179.83358 * 14 13 12 27 27 H 1.08003 * 119.99562 * 179.97438 * 15 14 13 28 28 H 1.08007 * 119.99448 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.40017 * 52.81710 * 18 17 9 30 30 H 1.09002 * 109.32750 * 293.03298 * 18 17 9 31 31 H 1.08002 * 118.66753 * 163.32200 * 19 18 17 32 32 H 1.08003 * 118.66482 * 180.33356 * 20 19 18 33 33 H 1.09006 * 109.40085 * 223.20642 * 21 20 19 34 34 H 1.08995 * 109.33212 * 103.41238 * 21 20 19 35 35 H 1.00901 * 110.99600 * 44.24425 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1961 -0.0880 9 6 1.2559 -2.4964 0.1212 10 1 0.3112 -2.3256 0.6374 11 6 0.9840 -3.0498 -1.2539 12 6 2.0115 -3.6113 -1.9886 13 6 1.7612 -4.1229 -3.2482 14 6 0.4853 -4.0649 -3.7767 15 6 -0.5412 -3.4986 -3.0441 16 6 -0.2918 -2.9909 -1.7829 17 7 2.0644 -3.4565 0.8843 18 6 2.4228 -2.9133 2.2017 19 6 3.0985 -3.9736 3.0253 20 6 3.0340 -5.2380 2.7306 21 6 2.2841 -5.7550 1.5349 22 7 1.3620 -4.7240 1.0393 23 1 -0.4851 0.8401 0.0004 24 1 3.0093 -3.6530 -1.5772 25 1 2.5631 -4.5656 -3.8204 26 1 0.2902 -4.4621 -4.7619 27 1 -1.5381 -3.4529 -3.4573 28 1 -1.0939 -2.5489 -1.2104 29 1 1.5203 -2.5781 2.7128 30 1 3.1001 -2.0692 2.0718 31 1 3.6608 -3.6727 3.8969 32 1 3.5399 -5.9456 3.3707 33 1 1.7172 -6.6417 1.8187 34 1 2.9932 -6.0146 0.7490 35 1 0.9341 -5.0088 0.1710 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705136299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:16 Heat of formation + Delta-G solvation = 63.705017 kcal Electronic energy + Delta-G solvation = -17700.404005 eV Core-core repulsion = 15084.798072 eV Total energy + Delta-G solvation = -2615.605933 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27006 -38.87187 -35.79759 -33.82883 -32.74811 -31.62321 -31.47764 -28.47550 -26.01856 -25.07409 -23.81485 -23.10174 -21.47769 -18.59227 -18.40197 -17.97515 -17.36443 -16.44280 -16.18611 -15.84821 -15.44638 -15.17292 -14.74431 -14.38160 -14.15358 -14.05613 -13.72567 -13.61303 -13.29928 -12.85724 -12.76517 -12.29834 -12.18822 -12.07580 -11.72610 -11.52981 -11.30636 -10.86487 -10.61065 -9.72548 -9.58228 -9.30759 -8.43351 -8.16852 -6.29381 0.73974 0.77693 1.37777 1.40077 1.43704 1.51438 2.34233 2.70653 3.11502 3.23821 3.99961 4.09772 4.21579 4.27702 4.32267 4.45837 4.60464 4.70469 4.75283 4.85387 4.89576 4.98023 5.01671 5.16414 5.32930 5.44033 5.46116 5.61813 5.64328 5.72129 5.80123 5.89832 5.99166 6.08439 6.18473 6.39717 6.57315 6.83567 6.93115 7.37981 8.87361 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.012207 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.568195 B = 2293.238838 C = 3775.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.240 3.760 10 H -0.001 1.001 11 C -0.046 4.046 12 C -0.120 4.120 13 C -0.128 4.128 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.132 4.132 17 N -0.374 5.374 18 C 0.098 3.902 19 C -0.162 4.162 20 C -0.155 4.155 21 C 0.086 3.914 22 N -0.561 5.561 23 H 0.263 0.737 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.044 0.956 35 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -9.589 -1.229 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.132 3.868 10 H 0.017 0.983 11 C -0.047 4.047 12 C -0.138 4.138 13 C -0.146 4.146 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.150 4.150 17 N -0.190 5.190 18 C -0.031 4.031 19 C -0.180 4.180 20 C -0.173 4.173 21 C -0.043 4.043 22 N -0.282 5.282 23 H 0.072 0.928 24 H 0.125 0.875 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.150 0.850 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.663 -9.420 -0.843 10.142 hybrid contribution -0.211 1.412 -0.139 1.434 sum 3.452 -8.007 -0.982 8.775 Atomic orbital electron populations 1.70076 1.07245 1.27516 1.49972 1.25700 0.95614 1.02398 0.94226 0.85531 0.79272 0.79466 0.77594 1.18859 1.20856 1.20367 1.21039 0.93205 0.89867 1.50564 0.92584 1.18295 0.92065 0.88840 0.87567 0.98334 1.20273 0.92791 0.93651 0.98002 1.20928 0.98306 0.99533 0.95058 1.21351 0.97759 1.00359 0.95111 1.21268 0.92654 1.01274 1.00588 1.21277 1.00172 0.99149 0.94036 1.21029 0.96570 1.00443 0.97006 1.65992 1.38117 0.99862 1.15002 1.20770 0.97440 0.96387 0.88477 1.22444 1.00536 0.94902 1.00137 1.22439 1.00111 0.96507 0.98261 1.20997 0.94380 0.93789 0.95132 1.63958 1.29937 1.00207 1.34137 0.92791 0.87544 0.84239 0.83580 0.84950 0.89019 0.96771 0.90314 0.85397 0.84263 0.87776 0.93778 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 12.85 21.45 0.28 -52.06 16 2 C 0.02 1.19 5.45 84.66 0.46 1.65 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.51 -27.60 6.96 25.60 0.18 -27.42 16 8 H 0.06 3.08 7.80 -2.91 -0.02 3.06 16 9 C 0.24 12.19 1.94 43.43 0.08 12.28 16 10 H 0.00 -0.07 7.21 -2.39 -0.02 -0.09 16 11 C -0.05 -2.13 3.51 -19.87 -0.07 -2.19 16 12 C -0.12 -4.90 9.15 22.27 0.20 -4.69 16 13 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 14 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 15 C -0.13 -4.61 10.05 22.27 0.22 -4.39 16 16 C -0.13 -5.87 9.67 22.27 0.22 -5.65 16 17 N -0.37 -16.64 4.38 -503.98 -2.21 -18.85 16 18 C 0.10 4.20 5.47 85.43 0.47 4.66 16 19 C -0.16 -5.39 10.01 26.57 0.27 -5.12 16 20 C -0.15 -4.52 10.01 26.57 0.27 -4.25 16 21 C 0.09 2.63 7.04 85.43 0.60 3.23 16 22 N -0.56 -21.93 7.00 -190.49 -1.33 -23.27 16 23 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 24 H 0.11 4.48 7.91 -2.91 -0.02 4.45 16 25 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 26 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.09 4.50 8.00 -2.91 -0.02 4.47 16 29 H 0.01 0.68 8.11 -2.39 -0.02 0.66 16 30 H 0.08 3.53 7.24 -2.39 -0.02 3.51 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.34 13.41 7.35 -204.60 -1.50 11.91 16 Total: -1.00 -62.09 292.94 1.67 -60.42 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.43 Total: 28.35 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.34 Total: -40.13 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.27 Total: -94.18 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.09 1.67 -60.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705136299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.127 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds