Wall clock time and date at job start Mon Mar 30 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.56114 * 2 1 4 4 C 1.53000 * 117.49749 * 214.31698 * 2 1 3 5 5 C 1.52998 * 117.49769 * 145.69179 * 2 1 3 6 6 H 1.08995 * 117.52041 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.49834 * 214.97659 * 5 2 1 8 8 O 1.20767 * 120.00298 * 334.99108 * 7 5 2 9 9 C 1.50702 * 119.99910 * 154.98726 * 7 5 2 10 10 H 1.08999 * 109.47001 * 35.00444 * 9 7 5 11 11 C 1.50695 * 109.47174 * 275.00154 * 9 7 5 12 12 H 1.08008 * 120.00092 * 331.65178 * 11 9 7 13 13 C 1.37879 * 120.00349 * 151.65904 * 11 9 7 14 14 N 1.31509 * 120.00470 * 183.06320 * 13 11 9 15 15 Si 1.86804 * 119.99608 * 3.06098 * 13 11 9 16 16 H 1.48497 * 109.46920 * 84.60890 * 15 13 11 17 17 H 1.48492 * 109.47020 * 204.60790 * 15 13 11 18 18 H 1.48507 * 109.47157 * 324.60879 * 15 13 11 19 19 C 1.50707 * 109.46864 * 155.00277 * 9 7 5 20 20 C 1.38236 * 119.99732 * 246.68761 * 19 9 7 21 21 C 1.38232 * 119.99913 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99926 * 0.02562 * 21 20 19 23 23 C 1.38239 * 120.00070 * 0.25728 * 22 21 20 24 24 C 1.38231 * 119.99834 * 359.46575 * 23 22 21 25 25 H 1.08999 * 109.47019 * 274.30637 * 1 2 3 26 26 H 1.08999 * 109.46888 * 34.30905 * 1 2 3 27 27 H 1.08991 * 109.47087 * 154.30781 * 1 2 3 28 28 H 1.08999 * 117.49790 * 145.02299 * 4 2 1 29 29 H 1.09000 * 117.50243 * 359.97438 * 4 2 1 30 30 H 0.96993 * 120.00215 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.00286 * 359.97438 * 20 19 9 32 32 H 1.07998 * 120.00249 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.99751 * 179.97438 * 22 21 20 34 34 H 1.08003 * 119.99820 * 179.72296 * 23 22 21 35 35 H 1.08001 * 120.00160 * 180.30160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8589 1.2679 7 6 3.5293 -0.7812 1.4607 8 8 4.2021 0.1416 1.0679 9 6 3.9826 -1.5929 2.6468 10 1 3.6942 -2.6345 2.5058 11 6 3.3360 -1.0577 3.8984 12 1 3.0592 -0.0155 3.9600 13 6 3.0979 -1.8983 4.9650 14 7 2.4794 -1.4458 6.0337 15 14 3.6538 -3.6802 4.8920 16 1 5.0760 -3.7725 5.3093 17 1 2.8159 -4.4980 5.8053 18 1 3.5116 -4.1866 3.5032 19 6 5.4812 -1.4995 2.7762 20 6 6.2638 -2.6202 2.5704 21 6 7.6384 -2.5345 2.6885 22 6 8.2303 -1.3282 3.0130 23 6 7.4473 -0.2088 3.2245 24 6 6.0731 -0.2932 3.1008 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1715 -0.8750 -1.2684 29 1 1.6113 -1.8586 -1.2681 30 1 2.3116 -2.0372 6.7839 31 1 5.8013 -3.5628 2.3173 32 1 8.2499 -3.4100 2.5274 33 1 9.3043 -1.2614 3.1057 34 1 7.9095 0.7326 3.4824 35 1 5.4616 0.5825 3.2613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705157422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:05 Heat of formation + Delta-G solvation = 1.673201 kcal Electronic energy + Delta-G solvation = -17328.386412 eV Core-core repulsion = 14677.797826 eV Total energy + Delta-G solvation = -2650.588586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.54783 -38.15099 -36.13749 -33.62316 -31.50944 -30.14487 -28.75957 -27.82945 -24.50852 -22.81654 -21.85005 -20.86277 -20.06370 -18.48908 -17.06976 -16.07916 -15.95465 -14.85568 -14.66503 -14.21364 -13.86178 -13.27425 -13.17948 -13.12456 -12.71143 -12.62143 -12.52958 -12.02318 -11.90598 -11.67495 -11.19628 -11.09411 -10.95972 -10.48090 -10.20758 -10.04114 -9.87126 -9.72211 -9.50253 -8.90522 -8.57990 -8.14265 -7.79729 -6.27081 -4.30771 2.12154 2.19610 2.71801 3.19524 3.26019 3.30058 4.21402 4.25869 4.46611 4.74389 5.04595 5.13249 5.16598 5.52122 5.52757 5.54360 5.61107 5.74776 5.87891 5.93415 5.95313 5.98422 6.19038 6.25021 6.32762 6.33362 6.46072 6.49472 6.58067 6.78485 6.86101 7.15234 7.25163 7.32774 7.60087 7.79934 8.24887 8.43366 8.74843 9.30629 10.84005 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.010135 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.574770 B = 2762.054441 C = 3737.288295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.129 4.129 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.201 4.201 6 H 0.124 0.876 7 C 0.409 3.591 8 O -0.477 6.477 9 C 0.000 4.000 10 H 0.071 0.929 11 C -0.503 4.503 12 H 0.081 0.919 13 C 0.086 3.914 14 N -0.885 5.885 15 Si 0.867 3.133 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.261 1.261 19 C -0.045 4.045 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.070 4.070 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.269 0.731 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -1.969 -9.306 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 H 0.127 0.873 4 C -0.194 4.194 5 C -0.220 4.220 6 H 0.142 0.858 7 C 0.287 3.713 8 O -0.352 6.352 9 C -0.020 4.020 10 H 0.088 0.912 11 C -0.540 4.540 12 H 0.099 0.901 13 C -0.119 4.119 14 N -0.520 5.520 15 Si 0.694 3.306 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.186 1.186 19 C -0.045 4.045 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.088 4.088 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.076 -1.528 -9.304 9.655 hybrid contribution 0.245 -1.137 0.375 1.222 sum 2.322 -2.665 -8.929 9.603 Atomic orbital electron populations 1.21378 0.92641 1.01513 1.02344 1.22275 0.95007 0.94732 1.02745 0.87300 1.23046 1.02794 1.01510 0.92016 1.22988 1.00334 1.04277 0.94378 0.85813 1.23892 0.83282 0.82199 0.81893 1.90263 1.54869 1.27559 1.62557 1.18902 0.89585 0.98419 0.95077 0.91167 1.20399 1.39970 0.98163 0.95462 0.90133 1.24936 0.93537 0.98422 0.94990 1.69852 1.39689 1.36566 1.05935 0.86989 0.79894 0.85199 0.78547 1.19139 1.21194 1.18560 1.20369 0.96488 0.92848 0.94832 1.21031 0.93772 0.98273 1.02649 1.20894 0.94688 0.97278 1.02013 1.20883 0.98777 0.93454 1.02947 1.21081 0.94316 0.97973 1.01584 1.20950 0.93656 0.98032 0.96191 0.91618 0.92280 0.92635 0.88655 0.88435 0.92119 0.87287 0.87251 0.87305 0.87058 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 10.19 37.16 0.38 -1.16 16 2 C -0.13 -2.00 5.92 -90.62 -0.54 -2.53 16 3 H 0.11 1.80 7.89 -51.93 -0.41 1.39 16 4 C -0.16 -2.27 9.79 -26.73 -0.26 -2.53 16 5 C -0.20 -3.56 5.85 -91.77 -0.54 -4.09 16 6 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 7 C 0.41 8.75 6.00 -29.04 -0.17 8.58 16 8 O -0.48 -10.88 15.20 5.99 0.09 -10.79 16 9 C 0.00 -0.01 1.81 -94.07 -0.17 -0.18 16 10 H 0.07 1.57 5.21 -51.93 -0.27 1.30 16 11 C -0.50 -13.38 8.19 -34.44 -0.28 -13.66 16 12 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 13 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 14 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 15 Si 0.87 20.48 26.46 -169.99 -4.50 15.98 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.68 6.12 56.52 0.35 -5.34 16 19 C -0.04 -1.01 4.05 -104.62 -0.42 -1.43 16 20 C -0.14 -2.83 8.96 -39.58 -0.35 -3.18 16 21 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 24 C -0.07 -1.55 8.03 -39.58 -0.32 -1.87 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.10 1.16 8.05 -51.93 -0.42 0.75 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.11 2.04 7.96 -52.49 -0.42 1.63 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.12 2.81 7.66 -52.49 -0.40 2.41 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -29.48 298.12 -8.01 -37.49 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.90 Total: 6.11 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -3.97 Total: -28.37 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.50 Total: 15.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.48 -8.01 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.160 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds