Wall clock time and date at job start Mon Mar 30 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.56114 * 2 1 4 4 C 1.53000 * 117.49749 * 214.31698 * 2 1 3 5 5 C 1.52998 * 117.49769 * 145.69179 * 2 1 3 6 6 H 1.08995 * 117.52041 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.49834 * 214.97659 * 5 2 1 8 8 O 1.20767 * 120.00298 * 334.99108 * 7 5 2 9 9 C 1.50702 * 119.99910 * 154.98726 * 7 5 2 10 10 H 1.08999 * 109.47001 * 35.00444 * 9 7 5 11 11 C 1.50695 * 109.47174 * 275.00154 * 9 7 5 12 12 H 1.08008 * 120.00092 * 331.65178 * 11 9 7 13 13 C 1.37879 * 120.00349 * 151.65904 * 11 9 7 14 14 N 1.31509 * 120.00470 * 183.06320 * 13 11 9 15 15 Si 1.86804 * 119.99608 * 3.06098 * 13 11 9 16 16 H 1.48497 * 109.46920 * 84.60890 * 15 13 11 17 17 H 1.48492 * 109.47020 * 204.60790 * 15 13 11 18 18 H 1.48507 * 109.47157 * 324.60879 * 15 13 11 19 19 C 1.50707 * 109.46864 * 155.00277 * 9 7 5 20 20 C 1.38236 * 119.99732 * 246.68761 * 19 9 7 21 21 C 1.38232 * 119.99913 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99926 * 0.02562 * 21 20 19 23 23 C 1.38239 * 120.00070 * 0.25728 * 22 21 20 24 24 C 1.38231 * 119.99834 * 359.46575 * 23 22 21 25 25 H 1.08999 * 109.47019 * 274.30637 * 1 2 3 26 26 H 1.08999 * 109.46888 * 34.30905 * 1 2 3 27 27 H 1.08991 * 109.47087 * 154.30781 * 1 2 3 28 28 H 1.08999 * 117.49790 * 145.02299 * 4 2 1 29 29 H 1.09000 * 117.50243 * 359.97438 * 4 2 1 30 30 H 0.96993 * 120.00215 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.00286 * 359.97438 * 20 19 9 32 32 H 1.07998 * 120.00249 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.99751 * 179.97438 * 22 21 20 34 34 H 1.08003 * 119.99820 * 179.72296 * 23 22 21 35 35 H 1.08001 * 120.00160 * 180.30160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8589 1.2679 7 6 3.5293 -0.7812 1.4607 8 8 4.2021 0.1416 1.0679 9 6 3.9826 -1.5929 2.6468 10 1 3.6942 -2.6345 2.5058 11 6 3.3360 -1.0577 3.8984 12 1 3.0592 -0.0155 3.9600 13 6 3.0979 -1.8983 4.9650 14 7 2.4794 -1.4458 6.0337 15 14 3.6538 -3.6802 4.8920 16 1 5.0760 -3.7725 5.3093 17 1 2.8159 -4.4980 5.8053 18 1 3.5116 -4.1866 3.5032 19 6 5.4812 -1.4995 2.7762 20 6 6.2638 -2.6202 2.5704 21 6 7.6384 -2.5345 2.6885 22 6 8.2303 -1.3282 3.0130 23 6 7.4473 -0.2088 3.2245 24 6 6.0731 -0.2932 3.1008 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3633 -0.9260 -0.4455 28 1 3.1715 -0.8750 -1.2684 29 1 1.6113 -1.8586 -1.2681 30 1 2.3116 -2.0372 6.7839 31 1 5.8013 -3.5628 2.3173 32 1 8.2499 -3.4100 2.5274 33 1 9.3043 -1.2614 3.1057 34 1 7.9095 0.7326 3.4824 35 1 5.4616 0.5825 3.2613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705157422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:05 Heat of formation + Delta-G solvation = -13.964818 kcal Electronic energy + Delta-G solvation = -17329.064528 eV Core-core repulsion = 14677.797826 eV Total energy + Delta-G solvation = -2651.266701 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15180 -39.63805 -37.55216 -35.53314 -33.38976 -31.66006 -30.11451 -29.28940 -26.30370 -24.40128 -23.38331 -22.21598 -21.44955 -20.09928 -19.09051 -17.64423 -17.48229 -16.56740 -16.31815 -15.77534 -15.23679 -14.96711 -14.85606 -14.48077 -14.37082 -14.12201 -13.82304 -13.57782 -13.46451 -13.06825 -12.81992 -12.66473 -12.31307 -12.06816 -11.98894 -11.62406 -11.45168 -11.25728 -11.00847 -10.91675 -10.29483 -9.67539 -9.37448 -8.37701 -6.46049 0.59475 0.66531 1.08654 1.31507 1.37754 1.42532 2.28541 2.89278 2.92812 3.01895 3.28742 3.83008 3.94382 4.10231 4.17393 4.22824 4.34618 4.38471 4.39788 4.57648 4.61688 4.79026 4.82908 4.86874 4.91210 4.94813 5.12126 5.18387 5.21813 5.29902 5.39971 5.41759 5.66168 5.71074 5.92052 6.17211 6.27127 6.55447 6.78785 7.18358 8.77430 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.010135 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.574770 B = 2762.054441 C = 3737.288295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.229 4.229 6 H 0.128 0.872 7 C 0.403 3.597 8 O -0.501 6.501 9 C -0.001 4.001 10 H 0.080 0.920 11 C -0.499 4.499 12 H 0.029 0.971 13 C 0.032 3.968 14 N -0.935 5.935 15 Si 0.926 3.074 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.228 1.228 19 C -0.073 4.073 20 C -0.152 4.152 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.103 4.103 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -4.458 -11.253 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.248 4.248 6 H 0.146 0.854 7 C 0.283 3.717 8 O -0.379 6.379 9 C -0.020 4.020 10 H 0.098 0.902 11 C -0.536 4.536 12 H 0.048 0.952 13 C -0.167 4.167 14 N -0.573 5.573 15 Si 0.749 3.251 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.151 1.151 19 C -0.073 4.073 20 C -0.170 4.170 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.441 -4.015 -11.278 12.456 hybrid contribution -0.104 -0.221 0.960 0.990 sum 3.337 -4.235 -10.318 11.642 Atomic orbital electron populations 1.21388 0.90252 1.03606 1.02141 1.22403 0.96793 0.93673 1.02015 0.89229 1.23191 1.02816 1.00998 0.89166 1.22917 0.98952 1.06308 0.96652 0.85434 1.24148 0.84500 0.81367 0.81679 1.90238 1.56057 1.28249 1.63310 1.18855 0.90429 0.98788 0.93956 0.90241 1.20379 1.39802 0.95905 0.97553 0.95237 1.25753 0.93520 1.03126 0.94327 1.69996 1.41858 1.38439 1.07035 0.86040 0.79078 0.79650 0.80326 1.19184 1.20845 1.15128 1.20342 0.96088 0.93994 0.96885 1.21304 0.95015 0.97928 1.02774 1.21398 0.94059 0.98904 0.99920 1.21374 1.00755 0.92411 1.00709 1.21384 0.93090 1.00006 1.00900 1.20887 0.95181 0.97259 0.98841 0.92954 0.90339 0.90417 0.89020 0.84731 0.92010 0.85640 0.83148 0.83102 0.84884 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 10.19 71.98 0.73 -2.03 16 2 C -0.13 -3.95 5.92 -10.79 -0.06 -4.01 16 3 H 0.09 3.04 7.89 -2.39 -0.02 3.02 16 4 C -0.13 -3.34 9.79 30.60 0.30 -3.04 16 5 C -0.23 -8.08 5.85 -11.54 -0.07 -8.15 16 6 H 0.13 4.34 8.14 -2.39 -0.02 4.33 16 7 C 0.40 17.83 6.00 29.10 0.17 18.00 16 8 O -0.50 -23.98 15.20 -1.47 -0.02 -24.01 16 9 C 0.00 -0.04 1.81 -13.03 -0.02 -0.07 16 10 H 0.08 3.50 5.21 -2.39 -0.01 3.49 16 11 C -0.50 -28.06 8.19 25.60 0.21 -27.85 16 12 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 13 C 0.03 1.83 5.47 84.66 0.46 2.29 16 14 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 15 Si 0.93 42.02 26.46 68.60 1.82 43.84 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.23 -9.05 6.12 99.48 0.61 -8.44 16 19 C -0.07 -3.28 4.05 -19.86 -0.08 -3.36 16 20 C -0.15 -5.83 8.96 22.27 0.20 -5.63 16 21 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 22 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 23 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 24 C -0.10 -4.73 8.03 22.27 0.18 -4.55 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.50 7.90 -2.39 -0.02 1.48 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.13 2.63 8.05 -2.39 -0.02 2.61 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.13 4.28 7.96 -2.91 -0.02 4.26 16 32 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.09 4.45 7.66 -2.91 -0.02 4.43 16 Total: -1.00 -68.45 298.12 5.75 -62.70 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.97 Total: 24.97 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 2.69 Total: -51.02 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.30 Total: -56.47 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.02 Total: -24.01 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.82 Total: 43.84 kcal Total: -68.45 5.75 -62.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.732 kcal (2) G-P(sol) polarization free energy of solvation -68.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds