Wall clock time and date at job start Mon Mar 30 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 115.55261 * 2 1 4 4 C 1.53004 * 117.51808 * 214.30250 * 2 1 3 5 5 C 1.52998 * 117.50041 * 145.67258 * 2 1 3 6 6 H 1.08997 * 117.50347 * 215.02337 * 5 2 1 7 7 C 1.50694 * 117.49719 * 0.02693 * 5 2 1 8 8 O 1.20765 * 120.00463 * 29.99789 * 7 5 2 9 9 C 1.50702 * 119.99790 * 209.99787 * 7 5 2 10 10 H 1.08998 * 109.47520 * 34.99922 * 9 7 5 11 11 C 1.50702 * 109.47108 * 274.99778 * 9 7 5 12 12 H 1.07996 * 120.00129 * 325.14923 * 11 9 7 13 13 C 1.37879 * 119.99761 * 145.15484 * 11 9 7 14 14 N 1.31509 * 120.00389 * 5.63026 * 13 11 9 15 15 Si 1.86799 * 119.99845 * 185.63786 * 13 11 9 16 16 H 1.48504 * 109.47059 * 59.99249 * 15 13 11 17 17 H 1.48501 * 109.47350 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47133 * 299.99831 * 15 13 11 19 19 C 1.50702 * 109.47171 * 154.99772 * 9 7 5 20 20 C 1.38237 * 119.99809 * 66.58918 * 19 9 7 21 21 C 1.38236 * 119.99543 * 179.78928 * 20 19 9 22 22 C 1.38231 * 120.00419 * 0.44369 * 21 20 19 23 23 C 1.38239 * 119.99589 * 359.80856 * 22 21 20 24 24 C 1.38230 * 120.00332 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47424 * 274.32421 * 1 2 3 26 26 H 1.09000 * 109.47509 * 34.32780 * 1 2 3 27 27 H 1.09003 * 109.47304 * 154.32402 * 1 2 3 28 28 H 1.09004 * 117.49552 * 145.02522 * 4 2 1 29 29 H 1.09000 * 117.50060 * 0.02562 * 4 2 1 30 30 H 0.96996 * 120.00613 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.00187 * 0.02562 * 20 19 9 32 32 H 1.08007 * 119.99999 * 180.27631 * 21 20 19 33 33 H 1.08000 * 119.99931 * 179.83840 * 22 21 20 34 34 H 1.08000 * 119.99542 * 180.02562 * 23 22 21 35 35 H 1.07997 * 119.99947 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1711 -0.8747 1.2691 7 6 1.3720 -2.1405 1.4609 8 8 0.2839 -2.4150 1.0146 9 6 1.8654 -2.8178 2.7134 10 1 2.4594 -2.1144 3.2970 11 6 2.7154 -4.0051 2.3409 12 1 2.4724 -4.5901 1.4663 13 6 3.8034 -4.3446 3.1169 14 7 4.0354 -3.7027 4.2410 15 14 4.9481 -5.7163 2.5714 16 1 5.5403 -5.3722 1.2538 17 1 6.0321 -5.8839 3.5724 18 1 4.1820 -6.9830 2.4539 19 6 0.6874 -3.2802 3.5318 20 6 -0.1366 -4.2814 3.0527 21 6 -1.2146 -4.7086 3.8053 22 6 -1.4738 -4.1283 5.0329 23 6 -0.6528 -3.1235 5.5096 24 6 0.4278 -2.6994 4.7591 25 1 -0.3634 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3634 -0.9262 -0.4453 28 1 3.1720 -0.8749 -1.2678 29 1 1.6119 -1.8584 -1.2684 30 1 4.8010 -3.9412 4.7867 31 1 0.0640 -4.7324 2.0921 32 1 -1.8558 -5.4939 3.4330 33 1 -2.3176 -4.4603 5.6197 34 1 -0.8551 -2.6705 6.4689 35 1 1.0689 -1.9142 5.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705157425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:07 Heat of formation + Delta-G solvation = 0.023160 kcal Electronic energy + Delta-G solvation = -17433.903631 eV Core-core repulsion = 14783.243494 eV Total energy + Delta-G solvation = -2650.660137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46167 -37.98638 -35.80622 -33.60648 -31.09752 -29.93356 -28.52905 -27.45263 -24.62792 -22.83883 -21.58621 -20.81771 -20.07544 -18.08807 -16.63923 -16.00875 -15.72012 -14.69487 -14.54730 -14.10686 -13.85321 -13.47536 -13.26946 -12.61591 -12.41687 -12.28488 -12.00049 -11.81623 -11.65791 -11.45676 -11.15102 -10.99242 -10.96945 -10.39953 -10.24631 -9.93272 -9.79408 -9.60668 -9.41807 -8.74246 -8.37488 -7.94223 -7.56669 -6.24474 -4.29528 2.36646 2.40177 2.85624 3.23753 3.27829 3.31615 4.24081 4.37439 4.69163 4.96783 5.11301 5.13437 5.36349 5.60926 5.70166 5.71963 5.80858 5.92153 6.04674 6.12403 6.19708 6.26336 6.31339 6.41464 6.50061 6.59902 6.63867 6.82351 6.87408 7.02331 7.19294 7.36994 7.46319 7.64925 7.79259 7.97561 8.11663 8.60306 8.78936 9.34335 10.84154 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.011731 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.328196 B = 2386.241307 C = 3870.814763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.199 4.199 6 H 0.121 0.879 7 C 0.399 3.601 8 O -0.480 6.480 9 C 0.031 3.969 10 H 0.086 0.914 11 C -0.506 4.506 12 H 0.061 0.939 13 C 0.073 3.927 14 N -0.877 5.877 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.023 4.023 20 C -0.083 4.083 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.134 4.134 24 C -0.120 4.120 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.267 0.733 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 4.548 -3.189 6.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 H 0.121 0.879 4 C -0.189 4.189 5 C -0.218 4.218 6 H 0.139 0.861 7 C 0.278 3.722 8 O -0.356 6.356 9 C 0.011 3.989 10 H 0.104 0.896 11 C -0.544 4.544 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.513 5.513 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.023 4.023 20 C -0.101 4.101 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.538 4.416 -3.252 7.118 hybrid contribution 0.994 -0.823 0.020 1.291 sum -3.543 3.593 -3.232 5.993 Atomic orbital electron populations 1.21377 0.92461 1.02017 1.01856 1.22283 0.95848 0.93530 1.03861 0.87890 1.22972 1.02175 1.01262 0.92456 1.23016 1.02885 1.00738 0.95119 0.86134 1.24296 0.84040 0.77579 0.86291 1.90230 1.22119 1.58227 1.65065 1.18452 0.92173 0.97782 0.90444 0.89628 1.20533 1.10563 1.11416 1.11838 0.92103 1.24961 0.97257 0.96516 0.94414 1.69912 1.28598 1.40964 1.11795 0.86542 0.80206 0.82170 0.78563 1.19865 1.21041 1.19950 1.20274 0.93887 0.93779 0.94373 1.20903 0.93802 0.96312 0.99113 1.20990 0.98613 1.00451 0.95439 1.20805 1.00208 0.98820 0.96883 1.20908 0.96439 0.98538 0.99299 1.21022 0.96914 1.00554 0.95304 0.92562 0.93258 0.90855 0.88695 0.88504 0.92352 0.86785 0.87617 0.87752 0.87592 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.57 37.15 0.32 -1.53 16 2 C -0.14 -2.09 6.41 -90.62 -0.58 -2.67 16 3 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.15 -2.39 9.74 -26.73 -0.26 -2.65 16 5 C -0.20 -3.63 6.13 -91.77 -0.56 -4.19 16 6 H 0.12 2.17 8.14 -51.93 -0.42 1.74 16 7 C 0.40 8.65 5.79 -29.04 -0.17 8.48 16 8 O -0.48 -10.81 12.69 5.99 0.08 -10.74 16 9 C 0.03 0.73 2.29 -94.07 -0.22 0.52 16 10 H 0.09 2.16 7.14 -51.93 -0.37 1.79 16 11 C -0.51 -13.11 7.64 -34.44 -0.26 -13.38 16 12 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 13 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 14 N -0.88 -23.68 12.85 55.43 0.71 -22.96 16 15 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.02 -0.53 4.57 -104.62 -0.48 -1.01 16 20 C -0.08 -1.88 8.03 -39.58 -0.32 -2.20 16 21 C -0.14 -2.72 10.05 -39.58 -0.40 -3.11 16 22 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 23 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 24 C -0.12 -2.61 9.67 -39.59 -0.38 -2.99 16 25 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.25 6.55 -51.93 -0.34 0.91 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 1.59 8.03 -51.93 -0.42 1.18 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.11 2.64 7.65 -52.49 -0.40 2.24 16 32 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.11 2.35 7.96 -52.49 -0.42 1.93 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -27.77 299.11 -8.80 -36.57 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.87 Total: 6.30 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -4.20 Total: -29.07 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.71 Total: -22.96 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.77 -8.80 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.588 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds