Wall clock time and date at job start Mon Mar 30 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 115.55261 * 2 1 4 4 C 1.53004 * 117.51808 * 214.30250 * 2 1 3 5 5 C 1.52998 * 117.50041 * 145.67258 * 2 1 3 6 6 H 1.08997 * 117.50347 * 215.02337 * 5 2 1 7 7 C 1.50694 * 117.49719 * 0.02693 * 5 2 1 8 8 O 1.20765 * 120.00463 * 29.99789 * 7 5 2 9 9 C 1.50702 * 119.99790 * 209.99787 * 7 5 2 10 10 H 1.08998 * 109.47520 * 34.99922 * 9 7 5 11 11 C 1.50702 * 109.47108 * 274.99778 * 9 7 5 12 12 H 1.07996 * 120.00129 * 325.14923 * 11 9 7 13 13 C 1.37879 * 119.99761 * 145.15484 * 11 9 7 14 14 N 1.31509 * 120.00389 * 5.63026 * 13 11 9 15 15 Si 1.86799 * 119.99845 * 185.63786 * 13 11 9 16 16 H 1.48504 * 109.47059 * 59.99249 * 15 13 11 17 17 H 1.48501 * 109.47350 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47133 * 299.99831 * 15 13 11 19 19 C 1.50702 * 109.47171 * 154.99772 * 9 7 5 20 20 C 1.38237 * 119.99809 * 66.58918 * 19 9 7 21 21 C 1.38236 * 119.99543 * 179.78928 * 20 19 9 22 22 C 1.38231 * 120.00419 * 0.44369 * 21 20 19 23 23 C 1.38239 * 119.99589 * 359.80856 * 22 21 20 24 24 C 1.38230 * 120.00332 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47424 * 274.32421 * 1 2 3 26 26 H 1.09000 * 109.47509 * 34.32780 * 1 2 3 27 27 H 1.09003 * 109.47304 * 154.32402 * 1 2 3 28 28 H 1.09004 * 117.49552 * 145.02522 * 4 2 1 29 29 H 1.09000 * 117.50060 * 0.02562 * 4 2 1 30 30 H 0.96996 * 120.00613 * 180.02562 * 14 13 11 31 31 H 1.07997 * 120.00187 * 0.02562 * 20 19 9 32 32 H 1.08007 * 119.99999 * 180.27631 * 21 20 19 33 33 H 1.08000 * 119.99931 * 179.83840 * 22 21 20 34 34 H 1.08000 * 119.99542 * 180.02562 * 23 22 21 35 35 H 1.07997 * 119.99947 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1711 -0.8747 1.2691 7 6 1.3720 -2.1405 1.4609 8 8 0.2839 -2.4150 1.0146 9 6 1.8654 -2.8178 2.7134 10 1 2.4594 -2.1144 3.2970 11 6 2.7154 -4.0051 2.3409 12 1 2.4724 -4.5901 1.4663 13 6 3.8034 -4.3446 3.1169 14 7 4.0354 -3.7027 4.2410 15 14 4.9481 -5.7163 2.5714 16 1 5.5403 -5.3722 1.2538 17 1 6.0321 -5.8839 3.5724 18 1 4.1820 -6.9830 2.4539 19 6 0.6874 -3.2802 3.5318 20 6 -0.1366 -4.2814 3.0527 21 6 -1.2146 -4.7086 3.8053 22 6 -1.4738 -4.1283 5.0329 23 6 -0.6528 -3.1235 5.5096 24 6 0.4278 -2.6994 4.7591 25 1 -0.3634 0.0775 1.0248 26 1 -0.3634 0.8486 -0.5795 27 1 -0.3634 -0.9262 -0.4453 28 1 3.1720 -0.8749 -1.2678 29 1 1.6119 -1.8584 -1.2684 30 1 4.8010 -3.9412 4.7867 31 1 0.0640 -4.7324 2.0921 32 1 -1.8558 -5.4939 3.4330 33 1 -2.3176 -4.4603 5.6197 34 1 -0.8551 -2.6705 6.4689 35 1 1.0689 -1.9142 5.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705157425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:07 Heat of formation + Delta-G solvation = -12.519578 kcal Electronic energy + Delta-G solvation = -17434.447525 eV Core-core repulsion = 14783.243494 eV Total energy + Delta-G solvation = -2651.204031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08125 -39.55807 -37.28140 -35.50041 -32.92013 -31.55192 -29.96124 -29.04929 -26.45119 -24.45625 -23.21878 -22.20066 -21.58812 -19.72520 -18.58891 -17.52095 -17.35453 -16.42069 -16.16056 -15.69794 -15.42246 -15.17327 -14.89245 -14.10663 -13.95756 -13.88058 -13.56138 -13.43073 -13.28783 -12.99400 -12.81781 -12.70832 -12.36570 -12.14805 -11.95799 -11.64040 -11.30709 -11.14295 -10.94545 -10.69359 -10.08803 -9.57429 -9.23477 -8.23447 -6.34350 0.72802 0.78311 1.20455 1.40911 1.43194 1.49893 2.38146 2.94584 3.05519 3.17142 3.44605 3.79822 4.04705 4.21786 4.27171 4.29239 4.42237 4.45894 4.56042 4.74208 4.85399 4.89270 4.91011 4.93158 4.98460 5.06422 5.13956 5.20311 5.38390 5.44342 5.52065 5.61112 5.76545 5.82124 5.95632 6.24287 6.39587 6.69979 6.97166 7.31399 8.84634 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.011731 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.328196 B = 2386.241307 C = 3870.814763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 H 0.137 0.863 4 C -0.140 4.140 5 C -0.229 4.229 6 H 0.118 0.882 7 C 0.397 3.603 8 O -0.495 6.495 9 C 0.028 3.972 10 H 0.062 0.938 11 C -0.515 4.515 12 H 0.047 0.953 13 C 0.031 3.969 14 N -0.904 5.904 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.050 4.050 20 C -0.109 4.109 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.142 4.142 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 4.904 -3.355 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 H 0.155 0.845 4 C -0.176 4.176 5 C -0.248 4.248 6 H 0.136 0.864 7 C 0.277 3.723 8 O -0.373 6.373 9 C 0.009 3.991 10 H 0.080 0.920 11 C -0.553 4.553 12 H 0.066 0.934 13 C -0.171 4.171 14 N -0.541 5.541 15 Si 0.779 3.221 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.050 4.050 20 C -0.127 4.127 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.161 4.161 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.222 4.778 -3.426 7.864 hybrid contribution 1.101 -0.918 0.098 1.436 sum -4.121 3.860 -3.328 6.555 Atomic orbital electron populations 1.21368 0.92679 1.02402 1.01192 1.22500 0.95691 0.94193 1.00964 0.84546 1.23099 1.03349 1.01017 0.90178 1.22890 1.02982 1.02183 0.96765 0.86358 1.24313 0.84262 0.78081 0.85653 1.90209 1.22757 1.59054 1.65251 1.18388 0.92282 0.96909 0.91571 0.91961 1.20648 1.11211 1.12055 1.11348 0.93441 1.25631 0.98495 0.98550 0.94422 1.70012 1.29117 1.42325 1.12644 0.85671 0.78471 0.79393 0.78593 1.18908 1.20417 1.20197 1.20332 0.94470 0.94948 0.95278 1.20885 0.95539 0.97105 0.99188 1.21350 0.97716 1.00780 0.95687 1.21281 1.00783 0.97584 0.96372 1.21317 0.95077 0.98235 1.00139 1.21167 0.98362 1.01170 0.95362 0.94202 0.89899 0.92924 0.85779 0.89577 0.92356 0.88725 0.84754 0.83487 0.84153 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.57 71.98 0.62 -2.93 16 2 C -0.12 -3.32 6.41 -10.80 -0.07 -3.39 16 3 H 0.14 3.06 8.14 -2.38 -0.02 3.04 16 4 C -0.14 -4.20 9.74 30.60 0.30 -3.90 16 5 C -0.23 -8.43 6.13 -11.54 -0.07 -8.50 16 6 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 7 C 0.40 17.90 5.79 29.10 0.17 18.07 16 8 O -0.50 -23.19 12.69 -1.47 -0.02 -23.21 16 9 C 0.03 1.40 2.29 -13.03 -0.03 1.37 16 10 H 0.06 3.35 7.14 -2.39 -0.02 3.33 16 11 C -0.52 -27.80 7.64 25.60 0.20 -27.61 16 12 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 13 C 0.03 1.65 5.45 84.66 0.46 2.11 16 14 N -0.90 -50.21 12.85 21.45 0.28 -49.93 16 15 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.05 -2.42 4.57 -19.86 -0.09 -2.51 16 20 C -0.11 -5.05 8.03 22.27 0.18 -4.87 16 21 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 22 C -0.14 -4.91 10.05 22.27 0.22 -4.68 16 23 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 24 C -0.14 -6.31 9.67 22.27 0.22 -6.10 16 25 H 0.04 1.30 8.08 -2.38 -0.02 1.28 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.78 6.55 -2.39 -0.02 1.76 16 28 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.09 2.79 8.03 -2.39 -0.02 2.77 16 30 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.09 4.62 7.65 -2.91 -0.02 4.60 16 32 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 34 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.11 4.70 7.96 -2.91 -0.02 4.68 16 Total: -1.00 -61.91 299.11 5.89 -56.02 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 1.06 Total: 25.18 kcal Atomic # 6 Polarization: -55.10 SS G_CDS: 2.55 Total: -52.55 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.28 Total: -49.93 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.02 Total: -23.21 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -61.91 5.89 -56.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.497 kcal (2) G-P(sol) polarization free energy of solvation -61.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds