Wall clock time and date at job start Mon Mar 30 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 115.54789 * 2 1 4 4 C 1.53074 * 117.51181 * 214.28308 * 2 1 3 5 5 C 1.52995 * 117.49798 * 145.67384 * 2 1 3 6 6 H 1.08997 * 117.49891 * 215.00276 * 5 2 1 7 7 C 1.50705 * 117.49837 * 359.97438 * 5 2 1 8 8 O 1.20756 * 119.99903 * 29.91508 * 7 5 2 9 9 C 1.50698 * 119.99670 * 209.91574 * 7 5 2 10 10 H 1.09006 * 109.47223 * 329.99484 * 9 7 5 11 11 C 1.50699 * 109.47356 * 89.99813 * 9 7 5 12 12 H 1.08001 * 119.99776 * 34.85192 * 11 9 7 13 13 C 1.37876 * 120.00099 * 214.84834 * 11 9 7 14 14 N 1.31518 * 119.99955 * 354.66711 * 13 11 9 15 15 Si 1.86796 * 120.00026 * 174.66768 * 13 11 9 16 16 H 1.48503 * 109.47190 * 270.00686 * 15 13 11 17 17 H 1.48505 * 109.46926 * 29.99821 * 15 13 11 18 18 H 1.48496 * 109.47369 * 149.99971 * 15 13 11 19 19 C 1.50702 * 109.46644 * 210.00006 * 9 7 5 20 20 C 1.38236 * 119.99988 * 292.79557 * 19 9 7 21 21 C 1.38234 * 119.99940 * 179.81164 * 20 19 9 22 22 C 1.38238 * 119.99741 * 0.40172 * 21 20 19 23 23 C 1.38231 * 120.00219 * 359.85156 * 22 21 20 24 24 C 1.38231 * 120.00063 * 359.96296 * 23 22 21 25 25 H 1.08997 * 109.47092 * 274.33109 * 1 2 3 26 26 H 1.09000 * 109.47190 * 34.32564 * 1 2 3 27 27 H 1.08999 * 109.47354 * 154.32478 * 1 2 3 28 28 H 1.08999 * 117.49371 * 145.03908 * 4 2 1 29 29 H 1.08999 * 117.51571 * 359.97438 * 4 2 1 30 30 H 0.97000 * 119.99463 * 179.97438 * 14 13 11 31 31 H 1.07993 * 119.99741 * 0.02562 * 20 19 9 32 32 H 1.07991 * 120.00128 * 180.23294 * 21 20 19 33 33 H 1.08002 * 119.99705 * 179.83325 * 22 21 20 34 34 H 1.07997 * 120.00145 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.00060 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2688 7 6 1.3719 -2.1399 1.4619 8 8 0.2829 -2.4128 1.0172 9 6 1.8666 -2.8182 2.7133 10 1 2.9538 -2.8909 2.6818 11 6 1.4517 -2.0140 3.9183 12 1 0.5057 -1.4929 3.9200 13 6 2.2796 -1.9434 5.0185 14 7 3.3812 -2.6606 5.0596 15 14 1.8367 -0.8290 6.4508 16 1 2.4253 0.5166 6.2315 17 1 0.3595 -0.7129 6.5492 18 1 2.3730 -1.4048 7.7102 19 6 1.2733 -4.2006 2.8033 20 6 -0.0851 -4.3578 3.0058 21 6 -0.6300 -5.6259 3.0845 22 6 0.1848 -6.7366 2.9690 23 6 1.5439 -6.5793 2.7717 24 6 2.0882 -5.3114 2.6892 25 1 -0.3633 0.0776 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1723 -0.8760 -1.2677 29 1 1.6123 -1.8600 -1.2675 30 1 3.9639 -2.6106 5.8335 31 1 -0.7211 -3.4901 3.0991 32 1 -1.6917 -5.7487 3.2389 33 1 -0.2405 -7.7273 3.0331 34 1 2.1805 -7.4471 2.6819 35 1 3.1501 -5.1885 2.5355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705157429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:09 Heat of formation + Delta-G solvation = -0.199411 kcal Electronic energy + Delta-G solvation = -17432.919365 eV Core-core repulsion = 14782.249577 eV Total energy + Delta-G solvation = -2650.669788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45913 -37.99326 -35.80682 -33.60031 -31.10494 -29.93910 -28.48270 -27.48736 -24.60079 -22.86769 -21.58737 -20.80038 -20.09895 -18.09290 -16.64675 -16.00920 -15.72018 -14.68192 -14.54452 -14.12810 -13.81300 -13.55760 -13.16795 -12.61079 -12.49137 -12.19840 -12.11288 -11.71587 -11.63674 -11.44648 -11.14875 -11.01298 -10.99255 -10.39450 -10.24616 -9.92681 -9.82653 -9.59619 -9.37961 -8.75381 -8.38501 -7.95009 -7.56506 -6.24583 -4.29427 2.35756 2.39306 2.85567 3.21886 3.28785 3.33103 4.24558 4.36690 4.67652 4.95551 5.11894 5.13029 5.34720 5.64678 5.69907 5.71346 5.80562 5.91331 5.98804 6.15747 6.21502 6.26896 6.37069 6.40672 6.49502 6.59142 6.65011 6.84954 6.87193 7.01829 7.19190 7.36537 7.46166 7.65456 7.79198 7.97135 8.11676 8.61013 8.79091 9.34492 10.84060 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.011630 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.354100 B = 2406.964660 C = 3772.103949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.201 4.201 6 H 0.121 0.879 7 C 0.400 3.600 8 O -0.479 6.479 9 C 0.031 3.969 10 H 0.085 0.915 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.877 5.877 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.284 1.284 19 C -0.024 4.024 20 C -0.083 4.083 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.134 4.134 24 C -0.120 4.120 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 0.199 -6.609 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 H 0.121 0.879 4 C -0.196 4.196 5 C -0.220 4.220 6 H 0.139 0.861 7 C 0.279 3.721 8 O -0.356 6.356 9 C 0.011 3.989 10 H 0.103 0.897 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.132 4.132 14 N -0.513 5.513 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.210 1.210 19 C -0.025 4.025 20 C -0.101 4.101 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.805 0.008 -6.717 6.955 hybrid contribution 0.139 0.559 1.110 1.250 sum -1.665 0.567 -5.608 5.877 Atomic orbital electron populations 1.21380 0.92407 1.01821 1.02143 1.22235 0.95945 0.93509 1.03126 0.87866 1.23041 1.02342 1.01853 0.92364 1.23056 1.03260 1.01390 0.94278 0.86083 1.24285 0.85095 0.78678 0.84088 1.90222 1.21858 1.59309 1.64162 1.18451 0.99473 0.89174 0.91761 0.89705 1.20593 1.04990 1.30712 0.97958 0.92015 1.24968 0.94742 0.95060 0.98429 1.69930 1.12648 1.38319 1.30388 0.86477 0.79055 0.80600 0.81341 1.20282 1.19587 1.21008 1.20293 0.93067 0.95823 0.93300 1.20933 0.95404 0.96143 0.97660 1.20998 0.98742 0.93208 1.02588 1.20811 0.94080 0.97622 1.04180 1.20909 0.94965 0.96790 1.02546 1.21034 0.99390 0.92157 1.01216 0.92196 0.93333 0.90978 0.88697 0.88562 0.92419 0.86634 0.87594 0.87743 0.87576 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.57 37.16 0.32 -1.61 16 2 C -0.13 -2.04 6.41 -90.58 -0.58 -2.62 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.16 -2.40 9.75 -26.69 -0.26 -2.66 16 5 C -0.20 -3.66 6.11 -91.77 -0.56 -4.22 16 6 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 7 C 0.40 8.67 5.74 -29.03 -0.17 8.50 16 8 O -0.48 -10.81 12.74 6.00 0.08 -10.74 16 9 C 0.03 0.73 2.31 -94.08 -0.22 0.52 16 10 H 0.08 2.14 7.12 -51.93 -0.37 1.77 16 11 C -0.51 -13.12 7.61 -34.44 -0.26 -13.39 16 12 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 13 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 14 N -0.88 -23.71 12.85 55.43 0.71 -23.00 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.02 -0.57 4.61 -104.62 -0.48 -1.05 16 20 C -0.08 -1.88 8.06 -39.58 -0.32 -2.20 16 21 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 22 C -0.15 -2.77 10.05 -39.58 -0.40 -3.16 16 23 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 24 C -0.12 -2.60 9.67 -39.58 -0.38 -2.99 16 25 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.50 8.04 -51.93 -0.42 1.09 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.12 2.68 7.58 -52.49 -0.40 2.28 16 32 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 2.35 7.96 -52.49 -0.42 1.93 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -27.84 299.07 -8.80 -36.64 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.87 Total: 6.29 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -4.20 Total: -29.17 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.71 Total: -23.00 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.84 -8.80 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.440 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds