Wall clock time and date at job start Mon Mar 30 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 115.54789 * 2 1 4 4 C 1.53074 * 117.51181 * 214.28308 * 2 1 3 5 5 C 1.52995 * 117.49798 * 145.67384 * 2 1 3 6 6 H 1.08997 * 117.49891 * 215.00276 * 5 2 1 7 7 C 1.50705 * 117.49837 * 359.97438 * 5 2 1 8 8 O 1.20756 * 119.99903 * 29.91508 * 7 5 2 9 9 C 1.50698 * 119.99670 * 209.91574 * 7 5 2 10 10 H 1.09006 * 109.47223 * 329.99484 * 9 7 5 11 11 C 1.50699 * 109.47356 * 89.99813 * 9 7 5 12 12 H 1.08001 * 119.99776 * 34.85192 * 11 9 7 13 13 C 1.37876 * 120.00099 * 214.84834 * 11 9 7 14 14 N 1.31518 * 119.99955 * 354.66711 * 13 11 9 15 15 Si 1.86796 * 120.00026 * 174.66768 * 13 11 9 16 16 H 1.48503 * 109.47190 * 270.00686 * 15 13 11 17 17 H 1.48505 * 109.46926 * 29.99821 * 15 13 11 18 18 H 1.48496 * 109.47369 * 149.99971 * 15 13 11 19 19 C 1.50702 * 109.46644 * 210.00006 * 9 7 5 20 20 C 1.38236 * 119.99988 * 292.79557 * 19 9 7 21 21 C 1.38234 * 119.99940 * 179.81164 * 20 19 9 22 22 C 1.38238 * 119.99741 * 0.40172 * 21 20 19 23 23 C 1.38231 * 120.00219 * 359.85156 * 22 21 20 24 24 C 1.38231 * 120.00063 * 359.96296 * 23 22 21 25 25 H 1.08997 * 109.47092 * 274.33109 * 1 2 3 26 26 H 1.09000 * 109.47190 * 34.32564 * 1 2 3 27 27 H 1.08999 * 109.47354 * 154.32478 * 1 2 3 28 28 H 1.08999 * 117.49371 * 145.03908 * 4 2 1 29 29 H 1.08999 * 117.51571 * 359.97438 * 4 2 1 30 30 H 0.97000 * 119.99463 * 179.97438 * 14 13 11 31 31 H 1.07993 * 119.99741 * 0.02562 * 20 19 9 32 32 H 1.07991 * 120.00128 * 180.23294 * 21 20 19 33 33 H 1.08002 * 119.99705 * 179.83325 * 22 21 20 34 34 H 1.07997 * 120.00145 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.00060 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2688 7 6 1.3719 -2.1399 1.4619 8 8 0.2829 -2.4128 1.0172 9 6 1.8666 -2.8182 2.7133 10 1 2.9538 -2.8909 2.6818 11 6 1.4517 -2.0140 3.9183 12 1 0.5057 -1.4929 3.9200 13 6 2.2796 -1.9434 5.0185 14 7 3.3812 -2.6606 5.0596 15 14 1.8367 -0.8290 6.4508 16 1 2.4253 0.5166 6.2315 17 1 0.3595 -0.7129 6.5492 18 1 2.3730 -1.4048 7.7102 19 6 1.2733 -4.2006 2.8033 20 6 -0.0851 -4.3578 3.0058 21 6 -0.6300 -5.6259 3.0845 22 6 0.1848 -6.7366 2.9690 23 6 1.5439 -6.5793 2.7717 24 6 2.0882 -5.3114 2.6892 25 1 -0.3633 0.0776 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1723 -0.8760 -1.2677 29 1 1.6123 -1.8600 -1.2675 30 1 3.9639 -2.6106 5.8335 31 1 -0.7211 -3.4901 3.0991 32 1 -1.6917 -5.7487 3.2389 33 1 -0.2405 -7.7273 3.0331 34 1 2.1805 -7.4471 2.6819 35 1 3.1501 -5.1885 2.5355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705157429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:09 Heat of formation + Delta-G solvation = -12.855656 kcal Electronic energy + Delta-G solvation = -17433.468181 eV Core-core repulsion = 14782.249577 eV Total energy + Delta-G solvation = -2651.218604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07759 -39.56255 -37.28076 -35.49765 -32.92793 -31.55335 -29.92735 -29.10769 -26.42361 -24.47167 -23.21578 -22.16476 -21.63161 -19.73001 -18.60069 -17.51758 -17.35746 -16.41596 -16.15231 -15.72182 -15.37740 -15.23768 -14.83507 -14.12772 -14.04384 -13.80594 -13.64584 -13.31974 -13.26949 -12.98600 -12.84237 -12.75905 -12.36728 -12.16212 -11.95562 -11.64462 -11.28882 -11.15079 -10.92954 -10.70557 -10.10239 -9.57787 -9.23127 -8.24151 -6.34852 0.72454 0.77671 1.20718 1.39191 1.41788 1.50670 2.37530 2.95751 3.03440 3.17248 3.42786 3.78940 4.05395 4.21617 4.27109 4.29248 4.43042 4.46182 4.56539 4.73486 4.84820 4.88084 4.91589 4.93322 4.98572 5.07904 5.13592 5.20582 5.38264 5.44463 5.51580 5.60898 5.76487 5.82277 5.95623 6.24266 6.39451 6.70266 6.97074 7.30934 8.84021 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.011630 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.354100 B = 2406.964660 C = 3772.103949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 H 0.132 0.868 4 C -0.133 4.133 5 C -0.231 4.231 6 H 0.118 0.882 7 C 0.397 3.603 8 O -0.495 6.495 9 C 0.028 3.972 10 H 0.062 0.938 11 C -0.514 4.514 12 H 0.046 0.954 13 C 0.031 3.969 14 N -0.904 5.904 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.281 1.281 19 C -0.051 4.051 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.142 4.142 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 -0.132 -7.317 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 H 0.150 0.850 4 C -0.170 4.170 5 C -0.251 4.251 6 H 0.136 0.864 7 C 0.277 3.723 8 O -0.373 6.373 9 C 0.008 3.992 10 H 0.081 0.919 11 C -0.552 4.552 12 H 0.064 0.936 13 C -0.171 4.171 14 N -0.541 5.541 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.206 1.206 19 C -0.052 4.052 20 C -0.127 4.127 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.160 4.160 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.006 -0.318 -7.433 7.705 hybrid contribution 0.157 0.583 1.281 1.417 sum -1.849 0.266 -6.151 6.429 Atomic orbital electron populations 1.21354 0.92883 1.02397 1.00967 1.22461 0.95675 0.94359 1.01391 0.84984 1.23167 1.03451 1.00778 0.89631 1.22916 1.03166 1.02556 0.96416 0.86351 1.24309 0.85233 0.79086 0.83636 1.90200 1.22494 1.60080 1.64487 1.18386 0.98113 0.90130 0.92536 0.91944 1.20689 1.04406 1.30868 0.99231 0.93588 1.25626 0.94724 0.96236 1.00514 1.70024 1.13450 1.39544 1.31060 0.85615 0.78522 0.79391 0.78598 1.19141 1.19840 1.20628 1.20342 0.93858 0.95951 0.95048 1.20904 0.95029 0.97015 0.99799 1.21353 1.00515 0.92377 1.01319 1.21288 0.93609 0.99082 1.01992 1.21320 0.96009 0.96696 1.00728 1.21182 0.99272 0.93134 1.02424 0.94660 0.90060 0.92629 0.85282 0.89194 0.92358 0.88710 0.84765 0.83466 0.84097 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.57 71.98 0.62 -3.11 16 2 C -0.12 -3.60 6.41 -10.77 -0.07 -3.67 16 3 H 0.13 3.20 8.14 -2.39 -0.02 3.19 16 4 C -0.13 -3.79 9.75 30.62 0.30 -3.49 16 5 C -0.23 -8.48 6.11 -11.54 -0.07 -8.55 16 6 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 7 C 0.40 17.94 5.74 29.10 0.17 18.11 16 8 O -0.50 -23.25 12.74 -1.44 -0.02 -23.27 16 9 C 0.03 1.39 2.31 -13.03 -0.03 1.36 16 10 H 0.06 3.35 7.12 -2.38 -0.02 3.33 16 11 C -0.51 -27.94 7.61 25.60 0.19 -27.74 16 12 H 0.05 2.57 7.82 -2.91 -0.02 2.54 16 13 C 0.03 1.65 5.45 84.65 0.46 2.11 16 14 N -0.90 -50.25 12.85 21.45 0.28 -49.97 16 15 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 C -0.05 -2.50 4.61 -19.86 -0.09 -2.59 16 20 C -0.11 -5.07 8.06 22.27 0.18 -4.89 16 21 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 22 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 23 C -0.13 -4.74 10.05 22.27 0.22 -4.52 16 24 C -0.14 -6.25 9.67 22.27 0.22 -6.04 16 25 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.91 6.55 -2.39 -0.02 1.89 16 28 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.09 4.66 7.58 -2.91 -0.02 4.64 16 32 H 0.13 4.28 8.06 -2.92 -0.02 4.25 16 33 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.11 4.71 7.96 -2.91 -0.02 4.69 16 Total: -1.00 -62.26 299.07 5.89 -56.37 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.06 Total: 24.83 kcal Atomic # 6 Polarization: -55.26 SS G_CDS: 2.54 Total: -52.71 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.28 Total: -49.97 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.02 Total: -23.27 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -62.26 5.89 -56.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.518 kcal (2) G-P(sol) polarization free energy of solvation -62.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds