Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86805 * 119.99742 * 2 1 4 4 H 1.48500 * 109.46775 * 86.14630 * 3 2 1 5 5 H 1.48495 * 109.46994 * 206.14560 * 3 2 1 6 6 H 1.48506 * 109.47014 * 326.14938 * 3 2 1 7 7 C 1.39878 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99669 * 14.99319 * 7 2 1 9 9 C 1.41027 * 120.00278 * 195.00112 * 7 2 1 10 10 C 1.40661 * 120.26803 * 29.02421 * 9 7 2 11 11 C 1.38003 * 119.77237 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.84050 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99856 * 179.97438 * 12 11 10 14 14 H 1.09003 * 115.55223 * 9.27968 * 13 12 11 15 15 C 1.52998 * 117.49977 * 223.60504 * 13 12 11 16 16 C 1.52995 * 59.99994 * 252.51045 * 15 13 12 17 17 C 1.52995 * 138.58921 * 130.88907 * 16 15 13 18 18 C 1.52995 * 138.58971 * 229.10915 * 16 15 13 19 19 C 1.39603 * 120.31976 * 0.02562 * 11 10 9 20 20 C 1.38059 * 120.54722 * 359.97438 * 19 11 10 21 21 C 1.38734 * 120.22091 * 359.78851 * 20 19 11 22 22 N 1.38868 * 120.16083 * 180.25897 * 21 20 19 23 23 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.11488 * 0.02562 * 10 9 7 25 25 H 0.96992 * 119.99994 * 359.97438 * 12 11 10 26 26 H 1.08991 * 117.49991 * 0.02562 * 15 13 12 27 27 H 1.09007 * 117.49911 * 145.02618 * 15 13 12 28 28 H 1.08997 * 117.49901 * 238.38519 * 17 16 15 29 29 H 1.09003 * 117.49455 * 23.40805 * 17 16 15 30 30 H 1.09006 * 117.49573 * 336.58823 * 18 16 15 31 31 H 1.08997 * 117.50274 * 121.59316 * 18 16 15 32 32 H 1.08002 * 119.72728 * 180.02562 * 19 11 10 33 33 H 1.08000 * 119.88847 * 179.97438 * 20 19 11 34 34 H 0.97003 * 119.99401 * 180.21335 * 22 21 20 35 35 H 0.97000 * 120.00589 * 0.20419 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4089 2.0935 1.3969 5 1 3.5789 1.4181 -0.6169 6 1 1.4834 2.6279 -0.7799 7 6 2.0085 -1.2113 -0.0005 8 1 1.4961 -2.1307 -0.2429 9 6 3.3828 -1.2322 0.3156 10 6 3.9258 -0.2661 1.1817 11 6 5.2719 -0.2965 1.4845 12 7 5.8134 0.6637 2.3452 13 6 7.2418 0.6343 2.6694 14 1 7.8426 -0.0616 2.0838 15 6 7.6392 0.8548 4.1303 16 6 7.8970 1.9501 3.0937 17 6 7.6634 3.4533 2.9304 18 6 9.0436 2.8581 2.6447 19 6 6.0958 -1.2805 0.9351 20 6 5.5767 -2.2351 0.0834 21 6 4.2258 -2.2287 -0.2324 22 7 3.7040 -3.1927 -1.0850 23 1 -0.4850 0.8401 -0.0004 24 1 3.2914 0.4963 1.6091 25 1 5.2433 1.3490 2.7273 26 1 6.8381 1.0212 4.8502 27 1 8.5019 0.3042 4.5058 28 1 7.0699 3.7806 2.0768 29 1 7.5490 4.0463 3.8379 30 1 9.8373 3.0596 3.3642 31 1 9.3585 2.7936 1.6032 32 1 7.1478 -1.2955 1.1789 33 1 6.2239 -2.9912 -0.3360 34 1 2.7597 -3.1841 -1.3066 35 1 4.2838 -3.8746 -1.4589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715651866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = 85.533491 kcal Electronic energy + Delta-G solvation = -16928.258673 eV Core-core repulsion = 14313.599294 eV Total energy + Delta-G solvation = -2614.659380 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.73950 -37.74398 -34.89413 -33.41210 -32.52101 -30.42930 -30.25562 -26.24495 -24.78834 -22.44714 -22.09910 -21.34446 -19.71018 -19.05416 -17.25397 -16.45217 -16.02237 -15.30067 -15.06254 -14.91841 -14.67902 -13.96074 -13.13121 -12.95843 -12.61990 -12.49652 -11.99136 -11.80842 -11.59675 -11.53567 -11.19573 -10.82947 -10.71813 -10.55278 -10.02641 -9.82285 -9.79621 -9.62841 -9.41491 -9.03890 -7.88005 -7.52982 -6.81589 -5.83441 -4.21707 2.74280 2.98889 3.18882 3.33519 3.43212 3.59001 3.93933 4.09689 4.19385 4.47982 4.68868 4.97459 5.10554 5.26683 5.56565 5.58878 5.61036 5.70395 5.72607 5.84728 5.87893 6.07225 6.10842 6.14181 6.37997 6.70144 6.80531 7.14259 7.26580 7.38970 7.50535 7.71293 7.94847 8.27954 8.41762 8.55480 8.63243 8.87171 9.05453 9.12549 10.21691 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.007358 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.890749 B = 3804.615577 C = 4711.505609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.083 3.917 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.244 1.244 6 H -0.300 1.300 7 C -0.447 4.447 8 H 0.087 0.913 9 C 0.081 3.919 10 C -0.274 4.274 11 C 0.197 3.803 12 N -0.729 5.729 13 C 0.166 3.834 14 H 0.129 0.871 15 C -0.154 4.154 16 C -0.257 4.257 17 C -0.131 4.131 18 C -0.128 4.128 19 C -0.255 4.255 20 C -0.143 4.143 21 C 0.100 3.900 22 N -0.885 5.885 23 H 0.282 0.718 24 H 0.099 0.901 25 H 0.390 0.610 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.393 0.607 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.027 3.305 3.614 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.134 4.134 3 Si 0.747 3.253 4 H -0.204 1.204 5 H -0.167 1.167 6 H -0.228 1.228 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.075 3.925 10 C -0.298 4.298 11 C 0.099 3.901 12 N -0.359 5.359 13 C 0.057 3.943 14 H 0.146 0.854 15 C -0.193 4.193 16 C -0.259 4.259 17 C -0.168 4.168 18 C -0.165 4.165 19 C -0.279 4.279 20 C -0.168 4.168 21 C -0.002 4.002 22 N -0.427 5.427 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.224 0.776 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.222 0.778 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.886 3.366 3.608 12.869 hybrid contribution -0.098 0.906 0.116 0.918 sum 11.788 4.272 3.724 13.080 Atomic orbital electron populations 1.69712 1.07909 1.29816 1.37408 1.26070 0.94702 1.01500 0.91130 0.86210 0.81040 0.79719 0.78304 1.20396 1.16691 1.22799 1.19118 0.92021 0.95421 1.41096 0.89502 1.17124 0.92783 0.91106 0.91469 1.20166 0.93066 1.06950 1.09600 1.17310 0.91975 0.89399 0.91427 1.43883 1.05522 1.33433 1.53044 1.21096 0.84035 0.94229 0.94959 0.85405 1.23319 1.02596 0.99197 0.94182 1.22235 1.05302 0.90219 1.08130 1.22535 0.99143 0.92468 1.02616 1.22566 0.91148 1.01241 1.01545 1.19647 0.97203 1.01333 1.09718 1.19791 0.93048 1.00724 1.03225 1.17733 0.91640 0.94346 0.96504 1.41872 1.11726 1.33481 1.55669 0.90829 0.88341 0.77626 0.88845 0.88593 0.88729 0.89088 0.88993 0.88793 0.88900 0.89029 0.77829 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.36 13.93 55.54 0.77 -21.59 16 2 C 0.08 2.21 5.45 -17.33 -0.09 2.11 16 3 Si 0.92 21.77 24.41 -169.99 -4.15 17.62 16 4 H -0.28 -6.38 6.67 56.52 0.38 -6.01 16 5 H -0.24 -5.99 6.71 56.52 0.38 -5.61 16 6 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.45 -12.03 8.97 -37.91 -0.34 -12.37 16 8 H 0.09 2.40 6.96 -52.48 -0.37 2.03 16 9 C 0.08 2.06 5.17 -106.66 -0.55 1.51 16 10 C -0.27 -6.73 6.86 -38.75 -0.27 -6.99 16 11 C 0.20 4.36 6.64 -83.77 -0.56 3.80 16 12 N -0.73 -13.63 5.75 -52.17 -0.30 -13.93 16 13 C 0.17 2.58 6.32 -67.93 -0.43 2.15 16 14 H 0.13 1.96 5.88 -51.93 -0.31 1.66 16 15 C -0.15 -2.01 10.46 -26.73 -0.28 -2.29 16 16 C -0.26 -3.45 5.60 -154.52 -0.86 -4.32 16 17 C -0.13 -1.59 10.53 -26.73 -0.28 -1.87 16 18 C -0.13 -1.44 10.53 -26.73 -0.28 -1.72 16 19 C -0.26 -5.41 9.32 -39.14 -0.36 -5.78 16 20 C -0.14 -3.07 9.86 -39.46 -0.39 -3.45 16 21 C 0.10 2.30 6.79 -83.22 -0.56 1.74 16 22 N -0.89 -17.48 8.98 32.75 0.29 -17.19 16 23 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 24 H 0.10 2.45 4.34 -52.48 -0.23 2.22 16 25 H 0.39 7.10 8.83 -40.82 -0.36 6.73 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.74 5.85 -52.49 -0.31 1.43 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.39 7.85 7.10 -40.82 -0.29 7.56 16 35 H 0.38 6.18 8.83 -40.82 -0.36 5.82 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -28.41 289.06 -8.65 -37.06 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -4.36 Total: 21.16 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -5.26 Total: -27.49 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.77 Total: -52.71 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.41 -8.65 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715651866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.593 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds