Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86805 * 119.99742 * 2 1 4 4 H 1.48500 * 109.46775 * 86.14630 * 3 2 1 5 5 H 1.48495 * 109.46994 * 206.14560 * 3 2 1 6 6 H 1.48506 * 109.47014 * 326.14938 * 3 2 1 7 7 C 1.39878 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99669 * 14.99319 * 7 2 1 9 9 C 1.41027 * 120.00278 * 195.00112 * 7 2 1 10 10 C 1.40661 * 120.26803 * 29.02421 * 9 7 2 11 11 C 1.38003 * 119.77237 * 179.97438 * 10 9 7 12 12 N 1.39854 * 119.84050 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99856 * 179.97438 * 12 11 10 14 14 H 1.09003 * 115.55223 * 9.27968 * 13 12 11 15 15 C 1.52998 * 117.49977 * 223.60504 * 13 12 11 16 16 C 1.52995 * 59.99994 * 252.51045 * 15 13 12 17 17 C 1.52995 * 138.58921 * 130.88907 * 16 15 13 18 18 C 1.52995 * 138.58971 * 229.10915 * 16 15 13 19 19 C 1.39603 * 120.31976 * 0.02562 * 11 10 9 20 20 C 1.38059 * 120.54722 * 359.97438 * 19 11 10 21 21 C 1.38734 * 120.22091 * 359.78851 * 20 19 11 22 22 N 1.38868 * 120.16083 * 180.25897 * 21 20 19 23 23 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.11488 * 0.02562 * 10 9 7 25 25 H 0.96992 * 119.99994 * 359.97438 * 12 11 10 26 26 H 1.08991 * 117.49991 * 0.02562 * 15 13 12 27 27 H 1.09007 * 117.49911 * 145.02618 * 15 13 12 28 28 H 1.08997 * 117.49901 * 238.38519 * 17 16 15 29 29 H 1.09003 * 117.49455 * 23.40805 * 17 16 15 30 30 H 1.09006 * 117.49573 * 336.58823 * 18 16 15 31 31 H 1.08997 * 117.50274 * 121.59316 * 18 16 15 32 32 H 1.08002 * 119.72728 * 180.02562 * 19 11 10 33 33 H 1.08000 * 119.88847 * 179.97438 * 20 19 11 34 34 H 0.97003 * 119.99401 * 180.21335 * 22 21 20 35 35 H 0.97000 * 120.00589 * 0.20419 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4089 2.0935 1.3969 5 1 3.5789 1.4181 -0.6169 6 1 1.4834 2.6279 -0.7799 7 6 2.0085 -1.2113 -0.0005 8 1 1.4961 -2.1307 -0.2429 9 6 3.3828 -1.2322 0.3156 10 6 3.9258 -0.2661 1.1817 11 6 5.2719 -0.2965 1.4845 12 7 5.8134 0.6637 2.3452 13 6 7.2418 0.6343 2.6694 14 1 7.8426 -0.0616 2.0838 15 6 7.6392 0.8548 4.1303 16 6 7.8970 1.9501 3.0937 17 6 7.6634 3.4533 2.9304 18 6 9.0436 2.8581 2.6447 19 6 6.0958 -1.2805 0.9351 20 6 5.5767 -2.2351 0.0834 21 6 4.2258 -2.2287 -0.2324 22 7 3.7040 -3.1927 -1.0850 23 1 -0.4850 0.8401 -0.0004 24 1 3.2914 0.4963 1.6091 25 1 5.2433 1.3490 2.7273 26 1 6.8381 1.0212 4.8502 27 1 8.5019 0.3042 4.5058 28 1 7.0699 3.7806 2.0768 29 1 7.5490 4.0463 3.8379 30 1 9.8373 3.0596 3.3642 31 1 9.3585 2.7936 1.6032 32 1 7.1478 -1.2955 1.1789 33 1 6.2239 -2.9912 -0.3360 34 1 2.7597 -3.1841 -1.3066 35 1 4.2838 -3.8746 -1.4589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715651866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = 67.626971 kcal Electronic energy + Delta-G solvation = -16929.035158 eV Core-core repulsion = 14313.599294 eV Total energy + Delta-G solvation = -2615.435864 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20269 -39.11874 -36.37032 -35.31445 -33.86788 -32.14298 -31.77616 -27.95286 -26.58620 -23.77417 -23.27250 -22.79614 -21.32831 -20.22237 -19.06488 -18.10740 -17.65091 -16.87996 -16.47572 -16.32267 -15.85256 -15.34699 -14.96642 -14.61093 -14.27517 -14.02880 -13.61043 -13.32581 -13.23189 -12.81027 -12.59127 -12.38913 -12.36384 -12.07986 -11.69791 -11.44128 -11.01152 -10.95506 -10.90440 -10.75271 -9.41049 -9.35225 -8.79213 -7.51976 -6.16885 0.89959 1.17985 1.26807 1.50011 1.51441 2.17266 2.43698 2.72009 2.92236 3.04818 3.42757 3.67166 3.71839 3.97561 4.05813 4.38454 4.50278 4.57882 4.73535 4.74470 4.78760 4.88798 4.91534 4.98918 4.99283 5.12087 5.26463 5.36839 5.46387 5.65472 5.76742 5.96475 6.17698 6.32186 6.64673 6.84379 6.94194 7.04415 7.28834 7.57818 8.29468 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.007358 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.890749 B = 3804.615577 C = 4711.505609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.046 3.954 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.291 1.291 7 C -0.470 4.470 8 H 0.064 0.936 9 C 0.050 3.950 10 C -0.285 4.285 11 C 0.190 3.810 12 N -0.729 5.729 13 C 0.136 3.864 14 H 0.131 0.869 15 C -0.137 4.137 16 C -0.267 4.267 17 C -0.137 4.137 18 C -0.110 4.110 19 C -0.243 4.243 20 C -0.142 4.142 21 C 0.085 3.915 22 N -0.877 5.877 23 H 0.287 0.713 24 H 0.089 0.911 25 H 0.390 0.610 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.390 0.610 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.427 3.851 4.416 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.166 4.166 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.183 1.183 6 H -0.219 1.219 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.045 3.955 10 C -0.309 4.309 11 C 0.090 3.910 12 N -0.358 5.358 13 C 0.028 3.972 14 H 0.148 0.852 15 C -0.175 4.175 16 C -0.269 4.269 17 C -0.174 4.174 18 C -0.147 4.147 19 C -0.267 4.267 20 C -0.166 4.166 21 C -0.018 4.018 22 N -0.420 5.420 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.223 0.777 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.218 0.782 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 15.327 3.908 4.422 16.424 hybrid contribution -0.902 0.668 -0.072 1.125 sum 14.424 4.576 4.350 15.745 Atomic orbital electron populations 1.69747 1.08753 1.30622 1.40127 1.26621 0.95229 1.03645 0.91121 0.85403 0.79138 0.77237 0.78390 1.19698 1.18284 1.21876 1.19126 0.93097 0.94891 1.43037 0.91825 1.17302 0.92623 0.92841 0.92741 1.20262 0.94318 1.06605 1.09729 1.17418 0.91330 0.90394 0.91874 1.43927 1.07097 1.32537 1.52258 1.21301 0.82208 0.96495 0.97160 0.85185 1.23312 1.02960 0.98681 0.92597 1.22313 1.07094 0.90207 1.07299 1.22645 0.99997 0.91749 1.02984 1.22715 0.90972 0.98661 1.02361 1.20111 0.98626 0.99988 1.07964 1.20205 0.92636 1.01211 1.02556 1.17951 0.92344 0.94449 0.97027 1.41790 1.11902 1.33296 1.55036 0.90299 0.89377 0.77691 0.89130 0.86406 0.89751 0.87658 0.86746 0.88422 0.85833 0.85709 0.78171 0.77697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.87 13.93 21.82 0.30 -48.56 16 2 C 0.05 2.53 5.45 85.23 0.46 2.99 16 3 Si 0.97 46.12 24.41 68.60 1.67 47.80 16 4 H -0.27 -12.33 6.67 99.48 0.66 -11.67 16 5 H -0.26 -12.73 6.71 99.48 0.67 -12.07 16 6 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 7 C -0.47 -26.38 8.97 23.35 0.21 -26.18 16 8 H 0.06 3.72 6.96 -2.91 -0.02 3.70 16 9 C 0.05 2.61 5.17 -21.18 -0.11 2.50 16 10 C -0.29 -14.02 6.86 22.81 0.16 -13.87 16 11 C 0.19 8.13 6.64 38.13 0.25 8.39 16 12 N -0.73 -26.02 5.75 -318.98 -1.83 -27.85 16 13 C 0.14 3.83 6.32 44.99 0.28 4.11 16 14 H 0.13 3.54 5.88 -2.39 -0.01 3.52 16 15 C -0.14 -3.12 10.46 30.59 0.32 -2.80 16 16 C -0.27 -6.33 5.60 -52.19 -0.29 -6.62 16 17 C -0.14 -2.94 10.53 30.59 0.32 -2.62 16 18 C -0.11 -2.06 10.53 30.59 0.32 -1.73 16 19 C -0.24 -9.61 9.32 22.56 0.21 -9.40 16 20 C -0.14 -5.68 9.86 22.35 0.22 -5.46 16 21 C 0.09 3.88 6.79 38.97 0.26 4.14 16 22 N -0.88 -34.16 8.98 -50.31 -0.45 -34.61 16 23 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 24 H 0.09 4.44 4.34 -2.91 -0.01 4.43 16 25 H 0.39 13.76 8.83 -92.71 -0.82 12.94 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 4.10 5.85 -2.91 -0.02 4.08 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.39 15.89 7.10 -92.71 -0.66 15.23 16 35 H 0.39 12.27 8.83 -92.71 -0.82 11.45 16 Total: -1.00 -61.95 289.06 1.09 -60.86 By element: Atomic # 1 Polarization: 50.13 SS G_CDS: -1.23 Total: 48.90 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 2.63 Total: -46.53 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -1.98 Total: -111.02 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.80 kcal Total: -61.95 1.09 -60.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715651866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.485 kcal (2) G-P(sol) polarization free energy of solvation -61.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds