Wall clock time and date at job start Mon Mar 30 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47527 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47179 * 299.99898 * 3 2 1 6 6 H 1.48501 * 109.47138 * 59.99590 * 3 2 1 7 7 C 1.39896 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99595 * 195.16908 * 7 2 1 9 9 C 1.41024 * 120.00034 * 15.16475 * 7 2 1 10 10 C 1.40672 * 120.26800 * 25.75152 * 9 7 2 11 11 C 1.38001 * 119.77208 * 180.23101 * 10 9 7 12 12 N 1.39852 * 119.84181 * 179.77461 * 11 10 9 13 13 C 1.46501 * 119.99965 * 179.72079 * 12 11 10 14 14 H 1.08996 * 115.54816 * 350.58103 * 13 12 11 15 15 C 1.52997 * 117.49566 * 136.25467 * 13 12 11 16 16 C 1.52991 * 117.51678 * 204.88219 * 13 12 11 17 17 C 1.52990 * 138.59318 * 121.63207 * 16 13 12 18 18 C 1.52995 * 138.59236 * 23.40839 * 16 13 12 19 19 C 1.39599 * 120.31839 * 359.49088 * 11 10 9 20 20 C 1.38058 * 120.55076 * 0.24239 * 19 11 10 21 21 C 1.38739 * 120.22337 * 0.02562 * 20 19 11 22 22 N 1.38854 * 120.16829 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99889 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.11269 * 0.02562 * 10 9 7 25 25 H 0.96999 * 119.99792 * 359.72162 * 12 11 10 26 26 H 1.09005 * 117.49850 * 215.00430 * 15 13 12 27 27 H 1.09004 * 117.50065 * 0.02562 * 15 13 12 28 28 H 1.09007 * 117.49512 * 336.58787 * 17 16 13 29 29 H 1.08995 * 117.50621 * 121.61047 * 17 16 13 30 30 H 1.08998 * 117.49864 * 238.38837 * 18 16 13 31 31 H 1.08999 * 117.49423 * 23.40604 * 18 16 13 32 32 H 1.08003 * 119.72489 * 180.25328 * 19 11 10 33 33 H 1.08005 * 119.89126 * 180.02562 * 20 19 11 34 34 H 0.97003 * 120.00148 * 0.02562 * 22 21 20 35 35 H 0.97003 * 120.00460 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0602 -1.2279 0.2442 9 6 1.3401 -2.4114 -0.3206 10 6 0.1925 -2.3887 -1.1338 11 6 -0.4562 -3.5685 -1.4366 12 7 -1.6000 -3.5471 -2.2411 13 6 -2.2879 -4.7981 -2.5698 14 1 -1.7635 -5.7110 -2.2876 15 6 -3.8156 -4.8067 -2.4879 16 6 -3.1224 -4.8302 -3.8516 17 6 -3.1880 -5.6227 -5.1586 18 6 -3.1984 -4.0931 -5.1902 19 6 0.0271 -4.7838 -0.9486 20 6 1.1554 -4.8221 -0.1540 21 6 1.8222 -3.6491 0.1691 22 7 2.9566 -3.6889 0.9689 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1815 -1.4508 -1.5171 25 1 -1.9378 -2.7039 -2.5814 26 1 -4.2965 -5.7255 -2.1518 27 1 -4.3090 -3.8815 -2.1900 28 1 -2.2792 -6.1267 -5.4877 29 1 -4.1209 -6.1372 -5.3890 30 1 -4.1381 -3.6013 -5.4412 31 1 -2.2965 -3.5908 -5.5399 32 1 -0.4858 -5.7018 -1.1950 33 1 1.5203 -5.7684 0.2174 34 1 3.2850 -4.5383 1.3029 35 1 3.4211 -2.8673 1.1930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715651880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:55 Heat of formation + Delta-G solvation = 84.591775 kcal Electronic energy + Delta-G solvation = -16784.267404 eV Core-core repulsion = 14169.567189 eV Total energy + Delta-G solvation = -2614.700215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.51624 -37.49714 -34.69518 -33.46518 -32.31492 -30.18285 -29.40681 -26.10634 -24.78375 -22.33943 -21.96822 -20.85671 -19.68695 -18.87686 -17.13121 -16.14660 -15.57713 -15.17872 -14.94871 -14.81843 -14.60586 -13.99036 -12.73825 -12.65229 -12.35275 -12.22275 -11.78791 -11.67132 -11.44164 -11.23799 -11.13758 -10.98627 -10.69468 -10.34723 -10.03031 -9.80579 -9.62883 -9.40929 -9.29815 -9.07370 -7.68804 -7.23751 -6.61567 -5.55309 -4.07444 2.88832 3.13667 3.17888 3.29658 3.40668 3.73640 4.02929 4.07898 4.37269 4.62352 4.83450 5.10086 5.25063 5.41620 5.67468 5.71164 5.81726 5.87600 5.89639 5.96976 5.98917 6.21394 6.25651 6.36139 6.64161 7.10497 7.13882 7.31733 7.46432 7.69954 7.86176 7.98170 8.11510 8.44832 8.72596 8.87878 8.92489 8.98671 9.24955 9.32766 10.36853 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.006182 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.918493 B = 4528.498265 C = 5394.970171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.462 4.462 8 H 0.072 0.928 9 C 0.094 3.906 10 C -0.198 4.198 11 C 0.174 3.826 12 N -0.727 5.727 13 C 0.169 3.831 14 H 0.126 0.874 15 C -0.157 4.157 16 C -0.256 4.256 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.254 4.254 20 C -0.152 4.152 21 C 0.086 3.914 22 N -0.889 5.889 23 H 0.274 0.726 24 H 0.120 0.880 25 H 0.391 0.609 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.374 0.626 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 -5.461 -5.103 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.494 4.494 8 H 0.090 0.910 9 C 0.089 3.911 10 C -0.222 4.222 11 C 0.077 3.923 12 N -0.357 5.357 13 C 0.060 3.940 14 H 0.143 0.857 15 C -0.196 4.196 16 C -0.259 4.259 17 C -0.167 4.167 18 C -0.167 4.167 19 C -0.278 4.278 20 C -0.177 4.177 21 C -0.015 4.015 22 N -0.431 5.431 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.224 0.776 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.199 0.801 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.096 -5.425 -5.106 8.502 hybrid contribution 0.275 1.091 0.096 1.129 sum -3.821 -4.334 -5.010 7.648 Atomic orbital electron populations 1.69882 1.07257 1.28273 1.37323 1.25759 0.94682 1.00728 0.92857 0.86366 0.80847 0.81723 0.78295 1.18715 1.20031 1.20320 1.19174 0.96595 0.91003 1.42591 0.91024 1.16974 0.92626 0.90325 0.91158 1.20526 1.00900 0.95118 1.05695 1.17508 0.87160 0.94319 0.93336 1.43812 1.29441 1.05300 1.57130 1.21047 0.88956 0.90803 0.93199 0.85705 1.23328 0.98217 1.02568 0.95489 1.22245 1.10201 1.07543 0.85864 1.22553 1.02325 0.94120 0.97723 1.22507 1.02476 0.94437 0.97255 1.19651 1.02334 0.94421 1.11382 1.19707 0.98606 0.94668 1.04678 1.17868 0.91548 0.93906 0.98173 1.41810 1.31729 1.09159 1.60412 0.91492 0.86256 0.77580 0.88821 0.88881 0.88890 0.89145 0.89231 0.88734 0.89505 0.89672 0.80079 0.78322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.88 55.55 0.60 -20.39 16 2 C 0.08 1.91 5.18 -17.33 -0.09 1.82 16 3 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.16 8.50 -37.91 -0.32 -12.48 16 8 H 0.07 1.79 6.67 -52.49 -0.35 1.44 16 9 C 0.09 2.51 5.58 -106.66 -0.60 1.92 16 10 C -0.20 -5.17 8.50 -38.75 -0.33 -5.50 16 11 C 0.17 4.10 6.64 -83.78 -0.56 3.55 16 12 N -0.73 -14.45 5.75 -52.18 -0.30 -14.75 16 13 C 0.17 2.84 6.32 -67.94 -0.43 2.41 16 14 H 0.13 2.09 5.88 -51.93 -0.31 1.79 16 15 C -0.16 -2.25 10.46 -26.74 -0.28 -2.53 16 16 C -0.26 -3.68 5.60 -154.52 -0.87 -4.54 16 17 C -0.13 -1.56 10.53 -26.74 -0.28 -1.84 16 18 C -0.13 -1.66 10.53 -26.73 -0.28 -1.94 16 19 C -0.25 -5.80 9.32 -39.14 -0.36 -6.16 16 20 C -0.15 -3.50 9.86 -39.46 -0.39 -3.89 16 21 C 0.09 2.09 6.79 -83.23 -0.56 1.52 16 22 N -0.89 -18.20 8.98 32.75 0.29 -17.90 16 23 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 24 H 0.12 3.24 6.15 -52.49 -0.32 2.92 16 25 H 0.39 7.58 8.83 -40.82 -0.36 7.22 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.78 5.86 -52.48 -0.31 1.47 16 33 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 34 H 0.37 6.47 8.83 -40.82 -0.36 6.11 16 35 H 0.39 7.81 7.04 -40.82 -0.29 7.52 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -28.03 294.80 -9.73 -37.76 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -4.39 Total: 24.56 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -5.35 Total: -27.66 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.60 Total: -53.04 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.03 -9.73 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715651880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.350 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds