Wall clock time and date at job start Mon Mar 30 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47527 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47179 * 299.99898 * 3 2 1 6 6 H 1.48501 * 109.47138 * 59.99590 * 3 2 1 7 7 C 1.39896 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99595 * 195.16908 * 7 2 1 9 9 C 1.41024 * 120.00034 * 15.16475 * 7 2 1 10 10 C 1.40672 * 120.26800 * 25.75152 * 9 7 2 11 11 C 1.38001 * 119.77208 * 180.23101 * 10 9 7 12 12 N 1.39852 * 119.84181 * 179.77461 * 11 10 9 13 13 C 1.46501 * 119.99965 * 179.72079 * 12 11 10 14 14 H 1.08996 * 115.54816 * 350.58103 * 13 12 11 15 15 C 1.52997 * 117.49566 * 136.25467 * 13 12 11 16 16 C 1.52991 * 117.51678 * 204.88219 * 13 12 11 17 17 C 1.52990 * 138.59318 * 121.63207 * 16 13 12 18 18 C 1.52995 * 138.59236 * 23.40839 * 16 13 12 19 19 C 1.39599 * 120.31839 * 359.49088 * 11 10 9 20 20 C 1.38058 * 120.55076 * 0.24239 * 19 11 10 21 21 C 1.38739 * 120.22337 * 0.02562 * 20 19 11 22 22 N 1.38854 * 120.16829 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99889 * 0.02562 * 1 2 3 24 24 H 1.08002 * 120.11269 * 0.02562 * 10 9 7 25 25 H 0.96999 * 119.99792 * 359.72162 * 12 11 10 26 26 H 1.09005 * 117.49850 * 215.00430 * 15 13 12 27 27 H 1.09004 * 117.50065 * 0.02562 * 15 13 12 28 28 H 1.09007 * 117.49512 * 336.58787 * 17 16 13 29 29 H 1.08995 * 117.50621 * 121.61047 * 17 16 13 30 30 H 1.08998 * 117.49864 * 238.38837 * 18 16 13 31 31 H 1.08999 * 117.49423 * 23.40604 * 18 16 13 32 32 H 1.08003 * 119.72489 * 180.25328 * 19 11 10 33 33 H 1.08005 * 119.89126 * 180.02562 * 20 19 11 34 34 H 0.97003 * 120.00148 * 0.02562 * 22 21 20 35 35 H 0.97003 * 120.00460 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0602 -1.2279 0.2442 9 6 1.3401 -2.4114 -0.3206 10 6 0.1925 -2.3887 -1.1338 11 6 -0.4562 -3.5685 -1.4366 12 7 -1.6000 -3.5471 -2.2411 13 6 -2.2879 -4.7981 -2.5698 14 1 -1.7635 -5.7110 -2.2876 15 6 -3.8156 -4.8067 -2.4879 16 6 -3.1224 -4.8302 -3.8516 17 6 -3.1880 -5.6227 -5.1586 18 6 -3.1984 -4.0931 -5.1902 19 6 0.0271 -4.7838 -0.9486 20 6 1.1554 -4.8221 -0.1540 21 6 1.8222 -3.6491 0.1691 22 7 2.9566 -3.6889 0.9689 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1815 -1.4508 -1.5171 25 1 -1.9378 -2.7039 -2.5814 26 1 -4.2965 -5.7255 -2.1518 27 1 -4.3090 -3.8815 -2.1900 28 1 -2.2792 -6.1267 -5.4877 29 1 -4.1209 -6.1372 -5.3890 30 1 -4.1381 -3.6013 -5.4412 31 1 -2.2965 -3.5908 -5.5399 32 1 -0.4858 -5.7018 -1.1950 33 1 1.5203 -5.7684 0.2174 34 1 3.2850 -4.5383 1.3029 35 1 3.4211 -2.8673 1.1930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715651880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:54 Heat of formation + Delta-G solvation = 68.458367 kcal Electronic energy + Delta-G solvation = -16784.967001 eV Core-core repulsion = 14169.567189 eV Total energy + Delta-G solvation = -2615.399812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99724 -39.00567 -36.24330 -35.33035 -33.72712 -31.66952 -31.29369 -27.89323 -26.60188 -23.62371 -23.24428 -22.47105 -21.37558 -20.11599 -18.93608 -17.82003 -17.31095 -16.80277 -16.47575 -16.21324 -15.83114 -15.39260 -14.42003 -14.29782 -14.03232 -13.93416 -13.38354 -13.27301 -12.92615 -12.78584 -12.67709 -12.36637 -12.07868 -12.03098 -11.76074 -11.18573 -10.96366 -10.95458 -10.86191 -10.73933 -9.29167 -9.13764 -8.49818 -7.30437 -6.00907 1.10735 1.41159 1.49547 1.54672 1.61873 2.26961 2.53477 2.83973 2.98363 3.11932 3.47667 3.76989 3.92763 4.04365 4.09740 4.56689 4.61227 4.61664 4.75025 4.80554 4.86315 4.92782 5.00636 5.06352 5.22976 5.28361 5.34282 5.44468 5.64949 5.89071 6.05648 6.15378 6.28014 6.56268 6.95846 7.05265 7.12198 7.20828 7.46258 7.67185 8.50675 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.006182 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.918493 B = 4528.498265 C = 5394.970171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.075 0.925 9 C 0.060 3.940 10 C -0.224 4.224 11 C 0.171 3.829 12 N -0.727 5.727 13 C 0.137 3.863 14 H 0.124 0.876 15 C -0.142 4.142 16 C -0.265 4.265 17 C -0.110 4.110 18 C -0.133 4.133 19 C -0.257 4.257 20 C -0.157 4.157 21 C 0.070 3.930 22 N -0.878 5.878 23 H 0.279 0.721 24 H 0.098 0.902 25 H 0.389 0.611 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.391 0.609 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -6.508 -5.717 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.522 4.522 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.249 4.249 11 C 0.072 3.928 12 N -0.356 5.356 13 C 0.029 3.971 14 H 0.141 0.859 15 C -0.181 4.181 16 C -0.267 4.267 17 C -0.147 4.147 18 C -0.170 4.170 19 C -0.281 4.281 20 C -0.181 4.181 21 C -0.032 4.032 22 N -0.422 5.422 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.222 0.778 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.219 0.781 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.524 -6.516 -5.727 9.784 hybrid contribution 0.335 1.297 0.232 1.360 sum -4.190 -5.219 -5.495 8.659 Atomic orbital electron populations 1.69971 1.08738 1.29315 1.38213 1.26588 0.95422 1.03964 0.92079 0.85254 0.79533 0.77096 0.78315 1.18100 1.19742 1.19677 1.19434 0.96918 0.91913 1.43914 0.90686 1.17365 0.93453 0.91659 0.92080 1.20485 1.02014 0.95265 1.07138 1.17613 0.87923 0.93888 0.93375 1.43826 1.28692 1.06600 1.56523 1.21215 0.90237 0.89215 0.96397 0.85860 1.23300 0.95978 1.03343 0.95472 1.22291 1.07899 1.10307 0.86219 1.22721 1.03766 0.93540 0.94687 1.22631 1.02930 0.95553 0.95919 1.19995 1.02340 0.95014 1.10740 1.20069 0.98380 0.95429 1.04227 1.18045 0.92694 0.93670 0.98768 1.41680 1.30673 1.10187 1.59687 0.91103 0.88417 0.77841 0.86656 0.89428 0.88398 0.86737 0.87679 0.89617 0.87078 0.86858 0.78138 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.25 10.88 21.82 0.24 -45.02 16 2 C 0.03 1.65 5.18 85.23 0.44 2.09 16 3 Si 0.98 39.52 29.59 68.60 2.03 41.55 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.49 -26.48 8.50 23.35 0.20 -26.28 16 8 H 0.08 3.83 6.67 -2.91 -0.02 3.81 16 9 C 0.06 3.27 5.58 -21.18 -0.12 3.15 16 10 C -0.22 -12.19 8.50 22.81 0.19 -11.99 16 11 C 0.17 8.22 6.64 38.13 0.25 8.47 16 12 N -0.73 -29.26 5.75 -319.00 -1.83 -31.09 16 13 C 0.14 4.46 6.32 44.99 0.28 4.74 16 14 H 0.12 3.97 5.88 -2.39 -0.01 3.96 16 15 C -0.14 -3.81 10.46 30.59 0.32 -3.49 16 16 C -0.27 -7.08 5.60 -52.19 -0.29 -7.37 16 17 C -0.11 -2.29 10.53 30.59 0.32 -1.97 16 18 C -0.13 -3.14 10.53 30.59 0.32 -2.82 16 19 C -0.26 -11.57 9.32 22.56 0.21 -11.36 16 20 C -0.16 -7.05 9.86 22.35 0.22 -6.83 16 21 C 0.07 3.43 6.79 38.97 0.26 3.69 16 22 N -0.88 -35.49 8.98 -50.31 -0.45 -35.95 16 23 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 24 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 25 H 0.39 15.57 8.83 -92.71 -0.82 14.75 16 26 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 27 H 0.09 2.44 8.14 -2.38 -0.02 2.43 16 28 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.11 4.37 5.86 -2.91 -0.02 4.35 16 33 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 34 H 0.39 12.96 8.83 -92.71 -0.82 12.14 16 35 H 0.39 15.61 7.04 -92.71 -0.65 14.95 16 Total: -1.00 -61.28 294.80 1.46 -59.82 By element: Atomic # 1 Polarization: 61.81 SS G_CDS: -1.15 Total: 60.66 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 2.62 Total: -49.98 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -2.05 Total: -112.05 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.28 1.46 -59.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715651880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.279 kcal (2) G-P(sol) polarization free energy of solvation -61.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds