Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46990 * 2 1 4 4 C 1.50697 * 109.47449 * 239.99861 * 2 1 3 5 5 H 1.08001 * 120.00237 * 240.00179 * 4 2 1 6 6 C 1.37877 * 119.99686 * 59.99729 * 4 2 1 7 7 N 1.31513 * 120.00457 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47153 * 60.00458 * 8 6 4 10 10 H 1.48506 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46999 * 299.99978 * 8 6 4 12 12 O 1.45198 * 109.46946 * 119.99695 * 2 1 3 13 13 C 1.34230 * 117.00173 * 270.00291 * 12 2 1 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 2 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 2 16 16 F 1.39905 * 109.47207 * 55.00025 * 15 13 12 17 17 C 1.52996 * 109.47213 * 295.00014 * 15 13 12 18 18 C 1.52996 * 109.46951 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47365 * 59.99890 * 18 17 15 20 20 C 1.52996 * 109.47176 * 299.99973 * 19 18 17 21 21 C 1.52997 * 109.46588 * 175.00006 * 15 13 12 22 22 H 1.08999 * 109.47111 * 60.00118 * 1 2 3 23 23 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47362 * 300.00397 * 1 2 3 25 25 H 0.96998 * 120.00219 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.46822 * 299.99926 * 17 15 13 27 27 H 1.08997 * 109.47474 * 60.00040 * 17 15 13 28 28 H 1.08993 * 109.47243 * 299.99585 * 18 17 15 29 29 H 1.09007 * 109.46984 * 179.97438 * 18 17 15 30 30 H 1.09002 * 109.47083 * 179.97438 * 19 18 17 31 31 H 1.09000 * 109.46998 * 59.99958 * 19 18 17 32 32 H 1.09006 * 109.46822 * 300.00209 * 20 19 18 33 33 H 1.08997 * 109.47474 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.47394 * 299.99382 * 21 15 13 35 35 H 1.08990 * 109.47621 * 60.00281 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9930 1.2509 2.2519 15 6 2.7181 -0.5772 3.5496 16 9 3.9051 -1.2689 3.2851 17 6 1.6655 -1.5539 4.0776 18 6 2.1740 -2.2044 5.3656 19 6 2.4369 -1.1219 6.4144 20 6 3.4895 -0.1452 5.8864 21 6 2.9814 0.5050 4.5985 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7095 1.1617 -3.4844 26 1 0.7407 -1.0149 4.2837 27 1 1.4779 -2.3249 3.3303 28 1 3.0988 -2.7433 5.1599 29 1 1.4238 -2.9000 5.7420 30 1 2.7987 -1.5855 7.3322 31 1 1.5120 -0.5831 6.6201 32 1 4.4144 -0.6841 5.6807 33 1 3.6772 0.6257 6.6337 34 1 3.7314 1.2009 4.2224 35 1 2.0567 1.0439 4.8046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810582674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = -162.075927 kcal Electronic energy + Delta-G solvation = -18508.280137 eV Core-core repulsion = 15419.821632 eV Total energy + Delta-G solvation = -3088.458505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.69577 -39.69287 -37.57254 -35.78603 -33.29893 -31.04170 -30.81049 -29.47706 -25.35581 -24.31033 -22.87346 -21.51604 -20.04325 -19.43223 -17.49615 -16.73535 -16.18932 -15.80002 -15.29362 -14.81133 -14.57197 -14.52269 -13.56017 -13.47662 -13.37180 -12.58889 -12.35988 -12.25072 -12.14259 -11.90602 -11.72792 -11.26341 -11.14053 -11.08046 -10.87827 -10.73814 -10.67872 -10.42440 -10.29523 -10.12719 -9.61308 -9.51707 -8.95197 -8.50760 -6.19615 -4.26669 2.71703 3.25784 3.27189 3.30515 3.39555 4.30777 4.39472 4.44314 4.63977 4.91989 4.98085 5.08420 5.13399 5.23889 5.36658 5.50415 5.54393 5.65995 5.91180 5.92201 5.95404 6.03086 6.14424 6.17833 6.33318 6.57681 6.83485 6.85134 7.07241 7.55124 7.67492 7.86418 8.09986 8.50725 8.83273 9.38637 10.87856 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.005715 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.400913 B = 4897.881418 C = 5045.055310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.344 6.344 13 C 0.437 3.563 14 O -0.505 6.505 15 C 0.139 3.861 16 F -0.187 7.187 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.101 0.899 23 H 0.038 0.962 24 H 0.016 0.984 25 H 0.267 0.733 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -3.855 15.321 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.259 6.259 13 C 0.278 3.722 14 O -0.394 6.394 15 C 0.119 3.881 16 F -0.167 7.167 17 C -0.177 4.177 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.165 4.165 22 H 0.119 0.881 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.540 -3.404 15.088 15.543 hybrid contribution 0.265 -0.253 -1.022 1.086 sum 1.805 -3.657 14.066 14.645 Atomic orbital electron populations 1.22166 0.97353 1.00214 1.01476 1.20722 0.91506 0.93965 0.77716 0.93534 1.20987 1.32605 1.13583 0.88796 0.91248 1.24886 0.94876 0.95088 0.99065 1.69884 1.36038 1.22523 1.24336 0.86306 0.79277 0.79532 0.80876 1.19887 1.20998 1.19931 1.86531 1.74927 1.43391 1.21077 1.23633 0.75895 0.86189 0.86489 1.90610 1.48182 1.16427 1.84178 1.20786 0.83084 0.92841 0.91371 1.92893 1.47982 1.80840 1.94985 1.22120 0.97495 0.99040 0.98999 1.21518 1.02023 0.97930 0.94090 1.21605 0.99324 0.96939 0.98179 1.21541 0.99170 0.98867 0.96152 1.21957 1.04113 0.96501 0.93902 0.88100 0.94305 0.96530 0.92306 0.89722 0.89141 0.91002 0.91032 0.91597 0.91696 0.91157 0.91067 0.89982 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.33 37.16 0.35 -3.58 16 2 C 0.21 5.83 2.56 -27.88 -0.07 5.76 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.92 8.90 -34.44 -0.31 -15.23 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 O -0.34 -8.48 9.86 -39.26 -0.39 -8.87 16 13 C 0.44 9.47 6.90 36.01 0.25 9.72 16 14 O -0.50 -11.93 15.20 -18.74 -0.28 -12.21 16 15 C 0.14 2.29 1.16 -91.77 -0.11 2.18 16 16 F -0.19 -3.29 15.76 2.25 0.04 -3.25 16 17 C -0.14 -1.88 4.98 -26.74 -0.13 -2.01 16 18 C -0.12 -1.24 5.80 -26.73 -0.16 -1.40 16 19 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 20 C -0.12 -1.26 5.80 -26.75 -0.16 -1.41 16 21 C -0.13 -1.74 4.30 -26.75 -0.12 -1.85 16 22 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -30.45 290.22 -6.62 -37.07 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.26 Total: -1.13 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.70 Total: -7.46 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.63 Total: -24.80 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.67 Total: -21.08 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.45 -6.62 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810582674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.005 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds