Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46990 * 2 1 4 4 C 1.50697 * 109.47449 * 239.99861 * 2 1 3 5 5 H 1.08001 * 120.00237 * 240.00179 * 4 2 1 6 6 C 1.37877 * 119.99686 * 59.99729 * 4 2 1 7 7 N 1.31513 * 120.00457 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47153 * 60.00458 * 8 6 4 10 10 H 1.48506 * 109.46714 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46999 * 299.99978 * 8 6 4 12 12 O 1.45198 * 109.46946 * 119.99695 * 2 1 3 13 13 C 1.34230 * 117.00173 * 270.00291 * 12 2 1 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 2 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 2 16 16 F 1.39905 * 109.47207 * 55.00025 * 15 13 12 17 17 C 1.52996 * 109.47213 * 295.00014 * 15 13 12 18 18 C 1.52996 * 109.46951 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47365 * 59.99890 * 18 17 15 20 20 C 1.52996 * 109.47176 * 299.99973 * 19 18 17 21 21 C 1.52997 * 109.46588 * 175.00006 * 15 13 12 22 22 H 1.08999 * 109.47111 * 60.00118 * 1 2 3 23 23 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47362 * 300.00397 * 1 2 3 25 25 H 0.96998 * 120.00219 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.46822 * 299.99926 * 17 15 13 27 27 H 1.08997 * 109.47474 * 60.00040 * 17 15 13 28 28 H 1.08993 * 109.47243 * 299.99585 * 18 17 15 29 29 H 1.09007 * 109.46984 * 179.97438 * 18 17 15 30 30 H 1.09002 * 109.47083 * 179.97438 * 19 18 17 31 31 H 1.09000 * 109.46998 * 59.99958 * 19 18 17 32 32 H 1.09006 * 109.46822 * 300.00209 * 20 19 18 33 33 H 1.08997 * 109.47474 * 180.02562 * 20 19 18 34 34 H 1.09004 * 109.47394 * 299.99382 * 21 15 13 35 35 H 1.08990 * 109.47621 * 60.00281 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9930 1.2509 2.2519 15 6 2.7181 -0.5772 3.5496 16 9 3.9051 -1.2689 3.2851 17 6 1.6655 -1.5539 4.0776 18 6 2.1740 -2.2044 5.3656 19 6 2.4369 -1.1219 6.4144 20 6 3.4895 -0.1452 5.8864 21 6 2.9814 0.5050 4.5985 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7095 1.1617 -3.4844 26 1 0.7407 -1.0149 4.2837 27 1 1.4779 -2.3249 3.3303 28 1 3.0988 -2.7433 5.1599 29 1 1.4238 -2.9000 5.7420 30 1 2.7987 -1.5855 7.3322 31 1 1.5120 -0.5831 6.6201 32 1 4.4144 -0.6841 5.6807 33 1 3.6772 0.6257 6.6337 34 1 3.7314 1.2009 4.2224 35 1 2.0567 1.0439 4.8046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810582674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = -178.650194 kcal Electronic energy + Delta-G solvation = -18508.998852 eV Core-core repulsion = 15419.821632 eV Total energy + Delta-G solvation = -3089.177220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.09396 -41.49059 -38.72205 -37.61049 -35.40986 -32.31056 -31.89291 -31.34952 -27.51300 -25.73561 -23.87753 -23.19367 -21.58304 -20.67874 -19.24528 -18.64439 -17.88449 -17.39151 -16.83468 -16.37720 -16.26994 -15.61357 -15.20887 -14.60633 -14.49364 -14.25407 -14.17171 -13.63368 -13.36421 -13.31720 -13.22307 -13.00528 -12.90386 -12.84844 -12.44279 -12.20108 -12.13479 -11.84546 -11.67454 -11.49260 -11.14762 -11.07078 -11.05266 -10.64213 -8.32962 -6.50635 0.96665 1.39284 1.43722 1.51052 1.69534 2.35762 2.97412 3.19167 3.27636 3.49579 3.62764 4.05623 4.10276 4.21469 4.32084 4.41927 4.44986 4.59323 4.71704 4.74668 4.77626 4.94786 4.99837 5.05185 5.13257 5.15445 5.27036 5.29412 5.41879 5.49831 5.55016 5.80218 5.96975 6.49697 6.73933 7.20470 8.74591 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.005715 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.400913 B = 4897.881418 C = 5045.055310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.214 3.786 3 H 0.007 0.993 4 C -0.554 4.554 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.270 1.270 12 O -0.355 6.355 13 C 0.427 3.573 14 O -0.529 6.529 15 C 0.141 3.859 16 F -0.194 7.194 17 C -0.138 4.138 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.125 4.125 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.273 0.727 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -5.063 16.569 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.591 4.591 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.198 1.198 11 H -0.195 1.195 12 O -0.270 6.270 13 C 0.270 3.730 14 O -0.420 6.420 15 C 0.122 3.878 16 F -0.174 7.174 17 C -0.176 4.176 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.163 4.163 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.617 -4.613 16.364 17.078 hybrid contribution 0.250 0.191 -1.384 1.419 sum 1.868 -4.422 14.980 15.730 Atomic orbital electron populations 1.21975 0.96111 1.00640 1.01094 1.20469 0.92477 0.92019 0.78937 0.97492 1.21244 1.33787 1.14067 0.90007 0.91723 1.25829 0.94573 0.95643 1.02071 1.69995 1.36338 1.23477 1.25451 0.85221 0.78729 0.78706 0.76688 1.18721 1.19848 1.19502 1.86528 1.75405 1.43693 1.21402 1.24877 0.74984 0.86136 0.87047 1.90583 1.49197 1.17595 1.84588 1.21103 0.83532 0.94333 0.88865 1.92877 1.48519 1.81049 1.94966 1.22204 0.96947 0.98097 1.00326 1.21551 1.02374 0.98518 0.92636 1.21634 0.99385 0.96261 0.98480 1.21572 0.99299 0.99682 0.94650 1.22035 1.04117 0.95579 0.94562 0.89835 0.93320 0.95435 0.91806 0.88746 0.90441 0.91486 0.88655 0.89080 0.90714 0.91519 0.88737 0.91412 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.63 16 2 C 0.21 12.13 2.56 29.85 0.08 12.21 16 3 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 4 C -0.55 -32.38 8.90 25.60 0.23 -32.15 16 5 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 8 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 O -0.35 -18.05 9.86 -51.41 -0.51 -18.56 16 13 C 0.43 19.00 6.90 71.24 0.49 19.50 16 14 O -0.53 -25.91 15.20 21.99 0.33 -25.57 16 15 C 0.14 4.63 1.16 -11.54 -0.01 4.62 16 16 F -0.19 -6.82 15.76 44.97 0.71 -6.11 16 17 C -0.14 -3.57 4.98 30.59 0.15 -3.41 16 18 C -0.11 -2.06 5.80 30.59 0.18 -1.88 16 19 C -0.12 -1.79 5.92 30.59 0.18 -1.60 16 20 C -0.11 -2.10 5.80 30.58 0.18 -1.92 16 21 C -0.13 -3.31 4.30 30.58 0.13 -3.18 16 22 H 0.08 4.63 6.07 -2.39 -0.01 4.62 16 23 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.09 2.23 8.14 -2.38 -0.02 2.22 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 1.30 7.80 -2.39 -0.02 1.28 16 29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.29 7.80 -2.38 -0.02 1.27 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.39 8.04 -2.39 -0.02 2.37 16 Total: -1.00 -67.07 290.22 6.59 -60.47 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.06 Total: 9.94 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 2.72 Total: -12.96 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.24 Total: -52.71 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.17 Total: -44.13 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.71 Total: -6.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.07 6.59 -60.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810582674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.176 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds