Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48493 * 109.47079 * 274.12254 * 3 2 1 5 5 H 1.48505 * 109.46815 * 34.12227 * 3 2 1 6 6 H 1.48497 * 109.47158 * 154.11958 * 3 2 1 7 7 C 1.39002 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00005 * 340.92208 * 7 2 1 9 9 N 1.37368 * 119.99662 * 160.92453 * 7 2 1 10 10 C 1.37457 * 125.05301 * 338.61843 * 9 7 2 11 11 C 1.35055 * 108.98540 * 179.97438 * 10 9 7 12 12 C 1.45018 * 106.24974 * 359.97438 * 11 10 9 13 13 C 1.34516 * 125.04821 * 158.65705 * 9 7 2 14 14 C 1.50736 * 131.54973 * 0.16289 * 13 9 7 15 15 C 1.52961 * 108.44042 * 150.42990 * 14 13 9 16 16 N 1.45484 * 113.28100 * 44.65019 * 15 14 13 17 17 C 1.30036 * 123.82756 * 325.99185 * 16 15 14 18 18 C 1.50696 * 121.41039 * 181.82930 * 17 16 15 19 19 C 1.53784 * 113.61586 * 92.49353 * 18 17 16 20 20 C 1.53780 * 87.08467 * 220.01738 * 19 18 17 21 21 C 1.53777 * 113.61515 * 354.99846 * 18 17 16 22 22 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.08003 * 125.50688 * 359.93895 * 10 9 7 24 24 H 1.08008 * 126.87246 * 180.02562 * 11 10 9 25 25 H 1.08995 * 109.64077 * 30.74206 * 14 13 9 26 26 H 1.09003 * 109.63765 * 270.11415 * 14 13 9 27 27 H 1.09000 * 108.71922 * 283.67430 * 15 14 13 28 28 H 1.08992 * 108.71814 * 165.63467 * 15 14 13 29 29 H 1.09002 * 112.85186 * 223.79770 * 18 17 16 30 30 H 1.09005 * 113.61446 * 334.57114 * 19 18 17 31 31 H 1.09005 * 113.61062 * 105.46994 * 19 18 17 32 32 H 1.08995 * 113.61312 * 270.88668 * 20 19 18 33 33 H 1.08992 * 113.61157 * 139.97609 * 20 19 18 34 34 H 1.09003 * 113.61826 * 254.52798 * 21 18 17 35 35 H 1.09004 * 113.61561 * 25.35006 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.4074 2.0967 -1.3964 5 1 1.4908 2.6259 0.7854 6 1 3.5854 1.4165 0.6111 7 6 2.0079 -1.2038 -0.0005 8 1 1.5124 -2.1135 0.3048 9 7 3.3250 -1.2363 -0.3894 10 6 3.9409 -0.2883 -1.1713 11 6 5.2323 -0.6398 -1.3526 12 6 5.4187 -1.8852 -0.6334 13 6 4.2035 -2.2010 -0.0620 14 6 4.0513 -3.4545 0.7612 15 6 5.0356 -4.5008 0.2359 16 7 6.3635 -3.9640 -0.0195 17 6 6.5862 -2.7561 -0.4463 18 6 7.9834 -2.2691 -0.7318 19 6 8.4169 -2.4638 -2.1944 20 6 9.7973 -2.8669 -1.6493 21 6 9.0777 -3.2817 -0.3550 22 1 -0.4850 0.8401 -0.0004 23 1 3.4684 0.5946 -1.5758 24 1 5.9772 -0.1008 -1.9192 25 1 3.0326 -3.8313 0.6698 26 1 4.2720 -3.2357 1.8059 27 1 4.6421 -4.9168 -0.6916 28 1 5.1176 -5.3031 0.9691 29 1 8.1679 -1.2648 -0.3504 30 1 7.8935 -3.2749 -2.7006 31 1 8.4287 -1.5401 -2.7729 32 1 10.4782 -2.0257 -1.5199 33 1 10.2508 -3.7017 -2.1835 34 1 9.6231 -3.0184 0.5513 35 1 8.7346 -4.3163 -0.3570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821281844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = 78.051586 kcal Electronic energy + Delta-G solvation = -17432.154750 eV Core-core repulsion = 14817.170931 eV Total energy + Delta-G solvation = -2614.983819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41178 -38.58427 -35.97221 -33.39677 -31.46952 -29.98398 -28.06538 -25.76511 -25.28279 -24.54070 -22.39810 -20.79947 -20.23451 -18.83014 -17.46803 -16.68114 -16.05212 -15.22386 -14.96078 -14.45165 -14.01009 -13.89437 -13.34115 -12.93608 -12.64529 -12.44874 -12.18924 -12.10154 -11.87206 -11.62941 -11.40542 -11.03549 -10.84314 -10.68683 -10.32499 -10.16834 -10.09054 -10.02212 -9.50260 -9.10712 -8.34075 -7.77204 -6.97813 -6.80511 -4.54365 2.34666 2.88768 3.05157 3.14933 3.41023 3.81962 4.13464 4.39742 4.71413 4.77560 4.91294 4.99782 5.15233 5.32368 5.55670 5.73401 5.81288 5.88496 5.94645 5.99037 6.08501 6.12619 6.13543 6.21725 6.27056 6.30571 6.47816 6.56856 6.60922 6.66763 6.81158 6.98211 7.22667 7.46313 7.73580 7.99318 8.15901 8.75009 8.80915 9.12066 10.09434 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.007059 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.645382 B = 3965.831347 C = 4583.979069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.359 4.359 8 H 0.121 0.879 9 N -0.229 5.229 10 C -0.094 4.094 11 C -0.165 4.165 12 C -0.259 4.259 13 C -0.001 4.001 14 C -0.059 4.059 15 C 0.068 3.932 16 N -0.578 5.578 17 C 0.280 3.720 18 C -0.058 4.058 19 C -0.119 4.119 20 C -0.146 4.146 21 C -0.123 4.123 22 H 0.287 0.713 23 H 0.145 0.855 24 H 0.126 0.874 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.849 -2.064 -1.581 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.486 4.486 8 H 0.139 0.861 9 N 0.114 4.886 10 C -0.225 4.225 11 C -0.190 4.190 12 C -0.268 4.268 13 C -0.128 4.128 14 C -0.098 4.098 15 C -0.063 4.063 16 N -0.288 5.288 17 C 0.095 3.905 18 C -0.077 4.077 19 C -0.158 4.158 20 C -0.183 4.183 21 C -0.161 4.161 22 H 0.098 0.902 23 H 0.162 0.838 24 H 0.144 0.856 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.600 -2.810 -1.196 11.995 hybrid contribution -0.906 1.573 -0.125 1.820 sum 10.694 -1.237 -1.322 10.846 Atomic orbital electron populations 1.69672 1.06604 1.29787 1.39679 1.25350 0.95422 0.99789 0.93310 0.86546 0.81094 0.80996 0.78979 1.19493 1.21275 1.16972 1.19588 0.83089 0.98266 1.47702 0.86150 1.39737 1.07289 1.13941 1.27587 1.21600 0.94728 0.99115 1.07062 1.21034 0.95125 0.96894 1.05965 1.19650 0.93722 1.00463 1.12995 1.20116 0.89373 0.96318 1.06958 1.20290 1.00104 0.91606 0.97818 1.21691 0.87926 0.96500 1.00138 1.70938 1.23100 1.15705 1.19063 1.22049 0.92267 0.88403 0.87798 1.21370 0.89547 0.99473 0.97320 1.22791 0.95998 1.01697 0.95306 1.22860 0.96424 1.00896 0.98135 1.22835 0.95816 1.00790 0.96649 0.90242 0.83804 0.85581 0.90816 0.91497 0.92235 0.90475 0.88024 0.90115 0.91416 0.90552 0.91783 0.92137 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.08 13.95 55.50 0.77 -21.31 16 2 C 0.07 1.95 5.45 -17.50 -0.10 1.85 16 3 Si 0.90 20.29 24.66 -169.99 -4.19 16.10 16 4 H -0.27 -5.79 6.67 56.52 0.38 -5.42 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.74 6.69 56.52 0.38 -5.36 16 7 C -0.36 -9.61 10.28 -14.79 -0.15 -9.76 16 8 H 0.12 3.33 7.77 -52.49 -0.41 2.93 16 9 N -0.23 -5.82 2.69 -57.34 -0.15 -5.98 16 10 C -0.09 -2.24 8.40 -16.16 -0.14 -2.38 16 11 C -0.17 -3.57 11.08 -38.03 -0.42 -3.99 16 12 C -0.26 -5.70 6.19 -103.84 -0.64 -6.35 16 13 C 0.00 -0.03 6.71 -81.51 -0.55 -0.57 16 14 C -0.06 -1.20 6.32 -27.89 -0.18 -1.38 16 15 C 0.07 1.25 6.96 -4.61 -0.03 1.21 16 16 N -0.58 -11.07 9.43 -55.68 -0.52 -11.60 16 17 C 0.28 5.37 6.45 -79.87 -0.52 4.85 16 18 C -0.06 -0.88 4.09 -90.96 -0.37 -1.26 16 19 C -0.12 -1.57 7.63 -25.92 -0.20 -1.77 16 20 C -0.15 -1.63 8.08 -25.92 -0.21 -1.84 16 21 C -0.12 -1.63 7.44 -25.92 -0.19 -1.83 16 22 H 0.29 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.14 3.30 4.40 -52.48 -0.23 3.07 16 24 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 25 H 0.07 1.45 7.85 -51.93 -0.41 1.04 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.40 7.33 -51.93 -0.38 1.02 16 LS Contribution 283.23 15.07 4.27 4.27 Total: -1.00 -27.99 283.23 -8.35 -36.34 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.83 Total: 5.37 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.69 Total: -23.20 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.09 Total: -38.88 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.19 Total: 16.10 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.99 -8.35 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.391 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds