Wall clock time and date at job start Mon Mar 30 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48493 * 109.47079 * 274.12254 * 3 2 1 5 5 H 1.48505 * 109.46815 * 34.12227 * 3 2 1 6 6 H 1.48497 * 109.47158 * 154.11958 * 3 2 1 7 7 C 1.39002 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00005 * 340.92208 * 7 2 1 9 9 N 1.37368 * 119.99662 * 160.92453 * 7 2 1 10 10 C 1.37457 * 125.05301 * 338.61843 * 9 7 2 11 11 C 1.35055 * 108.98540 * 179.97438 * 10 9 7 12 12 C 1.45018 * 106.24974 * 359.97438 * 11 10 9 13 13 C 1.34516 * 125.04821 * 158.65705 * 9 7 2 14 14 C 1.50736 * 131.54973 * 0.16289 * 13 9 7 15 15 C 1.52961 * 108.44042 * 150.42990 * 14 13 9 16 16 N 1.45484 * 113.28100 * 44.65019 * 15 14 13 17 17 C 1.30036 * 123.82756 * 325.99185 * 16 15 14 18 18 C 1.50696 * 121.41039 * 181.82930 * 17 16 15 19 19 C 1.53784 * 113.61586 * 92.49353 * 18 17 16 20 20 C 1.53780 * 87.08467 * 220.01738 * 19 18 17 21 21 C 1.53777 * 113.61515 * 354.99846 * 18 17 16 22 22 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.08003 * 125.50688 * 359.93895 * 10 9 7 24 24 H 1.08008 * 126.87246 * 180.02562 * 11 10 9 25 25 H 1.08995 * 109.64077 * 30.74206 * 14 13 9 26 26 H 1.09003 * 109.63765 * 270.11415 * 14 13 9 27 27 H 1.09000 * 108.71922 * 283.67430 * 15 14 13 28 28 H 1.08992 * 108.71814 * 165.63467 * 15 14 13 29 29 H 1.09002 * 112.85186 * 223.79770 * 18 17 16 30 30 H 1.09005 * 113.61446 * 334.57114 * 19 18 17 31 31 H 1.09005 * 113.61062 * 105.46994 * 19 18 17 32 32 H 1.08995 * 113.61312 * 270.88668 * 20 19 18 33 33 H 1.08992 * 113.61157 * 139.97609 * 20 19 18 34 34 H 1.09003 * 113.61826 * 254.52798 * 21 18 17 35 35 H 1.09004 * 113.61561 * 25.35006 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.4074 2.0967 -1.3964 5 1 1.4908 2.6259 0.7854 6 1 3.5854 1.4165 0.6111 7 6 2.0079 -1.2038 -0.0005 8 1 1.5124 -2.1135 0.3048 9 7 3.3250 -1.2363 -0.3894 10 6 3.9409 -0.2883 -1.1713 11 6 5.2323 -0.6398 -1.3526 12 6 5.4187 -1.8852 -0.6334 13 6 4.2035 -2.2010 -0.0620 14 6 4.0513 -3.4545 0.7612 15 6 5.0356 -4.5008 0.2359 16 7 6.3635 -3.9640 -0.0195 17 6 6.5862 -2.7561 -0.4463 18 6 7.9834 -2.2691 -0.7318 19 6 8.4169 -2.4638 -2.1944 20 6 9.7973 -2.8669 -1.6493 21 6 9.0777 -3.2817 -0.3550 22 1 -0.4850 0.8401 -0.0004 23 1 3.4684 0.5946 -1.5758 24 1 5.9772 -0.1008 -1.9192 25 1 3.0326 -3.8313 0.6698 26 1 4.2720 -3.2357 1.8059 27 1 4.6421 -4.9168 -0.6916 28 1 5.1176 -5.3031 0.9691 29 1 8.1679 -1.2648 -0.3504 30 1 7.8935 -3.2749 -2.7006 31 1 8.4287 -1.5401 -2.7729 32 1 10.4782 -2.0257 -1.5199 33 1 10.2508 -3.7017 -2.1835 34 1 9.6231 -3.0184 0.5513 35 1 8.7346 -4.3163 -0.3570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821281844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:42 Heat of formation + Delta-G solvation = 62.378637 kcal Electronic energy + Delta-G solvation = -17432.834380 eV Core-core repulsion = 14817.170931 eV Total energy + Delta-G solvation = -2615.663449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.16622 -39.75242 -37.47396 -35.32090 -33.13913 -31.69905 -29.69118 -27.30708 -26.35247 -26.10787 -23.96246 -22.40873 -21.91216 -20.07993 -19.16340 -18.27953 -17.91099 -16.53111 -16.42125 -16.01950 -15.65441 -15.43310 -15.01808 -14.58379 -14.40007 -13.96493 -13.73549 -13.29618 -13.15123 -13.05480 -12.89907 -12.75813 -12.61323 -12.23053 -11.88452 -11.56766 -11.33413 -11.18598 -11.11650 -10.64675 -9.88451 -9.55097 -8.94357 -8.57778 -6.56016 0.74070 1.09757 1.23916 1.35567 1.59775 1.97413 2.46859 2.62423 2.81485 3.40092 3.81921 3.93680 3.97263 4.08774 4.13344 4.24549 4.26979 4.34199 4.49187 4.57321 4.81115 4.84154 4.93528 4.97809 4.99104 5.08317 5.11347 5.18315 5.23463 5.28897 5.40076 5.47909 5.68761 5.78729 5.86232 6.21290 6.31464 6.90741 7.20127 7.24753 8.17747 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.007059 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.645382 B = 3965.831347 C = 4583.979069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.955 3.045 4 H -0.249 1.249 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.252 5.252 10 C -0.116 4.116 11 C -0.156 4.156 12 C -0.262 4.262 13 C -0.028 4.028 14 C -0.059 4.059 15 C 0.068 3.932 16 N -0.577 5.577 17 C 0.274 3.726 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.122 4.122 22 H 0.295 0.705 23 H 0.150 0.850 24 H 0.164 0.836 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.747 -1.298 -2.229 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.174 1.174 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.509 4.509 8 H 0.109 0.891 9 N 0.090 4.910 10 C -0.246 4.246 11 C -0.181 4.181 12 C -0.272 4.272 13 C -0.153 4.153 14 C -0.098 4.098 15 C -0.062 4.062 16 N -0.287 5.287 17 C 0.089 3.911 18 C -0.087 4.087 19 C -0.157 4.157 20 C -0.165 4.165 21 C -0.160 4.160 22 H 0.106 0.894 23 H 0.167 0.833 24 H 0.181 0.819 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.485 -2.058 -1.850 14.747 hybrid contribution -1.744 1.201 0.081 2.119 sum 12.742 -0.857 -1.768 12.892 Atomic orbital electron populations 1.69716 1.07754 1.31075 1.41030 1.26026 0.96038 1.02444 0.92721 0.85672 0.79160 0.77386 0.79957 1.17408 1.20122 1.18196 1.19433 0.84332 0.97844 1.49273 0.89082 1.39812 1.06971 1.15165 1.29050 1.21976 0.95699 0.99420 1.07531 1.21495 0.94916 0.96553 1.05113 1.20179 0.94173 1.00857 1.12002 1.20866 0.90110 0.96842 1.07531 1.20374 1.00575 0.91209 0.97625 1.21788 0.87292 0.96403 1.00748 1.71018 1.23090 1.15859 1.18768 1.22642 0.93360 0.87820 0.87300 1.21623 0.87437 1.00400 0.99201 1.22794 0.96995 1.01943 0.93968 1.22808 0.95572 1.01912 0.96197 1.22800 0.95430 0.99309 0.98415 0.89416 0.83262 0.81867 0.91321 0.91352 0.92427 0.87837 0.87006 0.91572 0.90031 0.88433 0.90618 0.91090 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.31 13.95 21.66 0.30 -47.01 16 2 C 0.04 2.01 5.45 84.96 0.46 2.47 16 3 Si 0.95 41.75 24.66 68.60 1.69 43.44 16 4 H -0.25 -10.00 6.67 99.48 0.66 -9.34 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -11.66 6.69 99.48 0.67 -10.99 16 7 C -0.38 -21.26 10.28 84.01 0.86 -20.40 16 8 H 0.09 5.41 7.77 -2.91 -0.02 5.38 16 9 N -0.25 -13.01 2.69 -335.33 -0.90 -13.92 16 10 C -0.12 -5.45 8.40 83.08 0.70 -4.75 16 11 C -0.16 -6.42 11.08 23.28 0.26 -6.16 16 12 C -0.26 -11.26 6.19 -19.36 -0.12 -11.38 16 13 C -0.03 -1.33 6.71 42.09 0.28 -1.05 16 14 C -0.06 -2.42 6.32 29.85 0.19 -2.23 16 15 C 0.07 2.44 6.96 86.56 0.60 3.05 16 16 N -0.58 -21.27 9.43 -330.08 -3.11 -24.39 16 17 C 0.27 10.03 6.45 45.08 0.29 10.32 16 18 C -0.07 -1.86 4.09 -11.01 -0.05 -1.90 16 19 C -0.12 -2.72 7.63 31.12 0.24 -2.49 16 20 C -0.13 -2.34 8.08 31.12 0.25 -2.08 16 21 C -0.12 -2.85 7.44 31.12 0.23 -2.62 16 22 H 0.30 14.59 8.31 -92.71 -0.77 13.82 16 23 H 0.15 6.66 4.40 -2.91 -0.01 6.65 16 24 H 0.16 5.35 8.06 -2.91 -0.02 5.33 16 25 H 0.07 2.83 7.85 -2.39 -0.02 2.81 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.07 1.72 8.09 -2.38 -0.02 1.70 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 2.15 7.33 -2.38 -0.02 2.13 16 Total: -1.00 -60.95 283.23 3.18 -57.78 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.00 Total: 23.32 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.20 Total: -39.23 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -3.71 Total: -85.31 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.69 Total: 43.44 kcal Total: -60.95 3.18 -57.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.154 kcal (2) G-P(sol) polarization free energy of solvation -60.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds