Wall clock time and date at job start Mon Mar 30 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 C 1.50700 * 109.47318 * 120.00005 * 2 1 3 5 5 N 1.30106 * 124.94959 * 300.02415 * 4 2 1 6 6 C 1.35787 * 109.64359 * 179.97438 * 5 4 2 7 7 C 1.39734 * 133.60143 * 179.97438 * 6 5 4 8 8 C 1.36605 * 119.88806 * 180.02562 * 7 6 5 9 9 C 1.38776 * 120.66622 * 359.97438 * 8 7 6 10 10 C 1.37851 * 120.45485 * 0.03810 * 9 8 7 11 11 C 1.38832 * 119.68776 * 359.97438 * 10 9 8 12 12 N 1.36036 * 124.94846 * 119.99953 * 4 2 1 13 13 C 1.46503 * 126.35074 * 0.05961 * 12 4 2 14 14 C 1.50703 * 109.46743 * 269.98144 * 13 12 4 15 15 H 1.08003 * 120.00272 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99820 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99835 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47274 * 90.00432 * 18 16 14 20 20 H 1.48509 * 109.46842 * 210.00158 * 18 16 14 21 21 H 1.48495 * 109.47394 * 329.99833 * 18 16 14 22 22 H 1.09001 * 109.47060 * 300.00092 * 1 2 3 23 23 H 1.09006 * 109.47015 * 59.99745 * 1 2 3 24 24 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47252 * 240.00664 * 2 1 3 26 26 H 1.09006 * 109.47357 * 300.00045 * 3 2 1 27 27 H 1.09001 * 109.47203 * 59.99995 * 3 2 1 28 28 H 1.09001 * 109.47024 * 180.02562 * 3 2 1 29 29 H 1.08009 * 120.05649 * 0.29744 * 7 6 5 30 30 H 1.08001 * 119.66343 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.77372 * 180.02562 * 9 8 7 32 32 H 1.08000 * 120.15788 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.46904 * 29.97890 * 13 12 4 34 34 H 1.08994 * 109.47324 * 149.98344 * 13 12 4 35 35 H 0.96995 * 119.99446 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7777 -0.3511 2.4547 6 6 2.3830 -1.2077 3.3171 7 6 2.4416 -1.2907 4.7107 8 6 3.1523 -2.2956 5.3035 9 6 3.8192 -3.2394 4.5351 10 6 3.7755 -3.1771 3.1587 11 6 3.0585 -2.1627 2.5387 12 7 2.8177 -1.8211 1.2229 13 6 3.3163 -2.5241 0.0382 14 6 2.3273 -3.5857 -0.3691 15 1 1.4185 -3.7234 0.1980 16 6 2.5826 -4.3814 -1.4659 17 7 1.7193 -5.3075 -1.8216 18 14 4.1541 -4.1428 -2.4472 19 1 5.2248 -5.0042 -1.8843 20 1 3.9137 -4.5147 -3.8647 21 1 4.5730 -2.7201 -2.3729 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.9223 -0.5642 5.3183 30 1 3.1955 -2.3561 6.3809 31 1 4.3764 -4.0280 5.0188 32 1 4.2966 -3.9138 2.5654 33 1 3.4440 -1.8139 -0.7787 34 1 4.2747 -2.9894 0.2683 35 1 1.8992 -5.8675 -2.5930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006348005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:04 Heat of formation + Delta-G solvation = 54.405101 kcal Electronic energy + Delta-G solvation = -17472.212380 eV Core-core repulsion = 14856.203172 eV Total energy + Delta-G solvation = -2616.009208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53980 -37.13039 -34.62899 -34.08380 -32.37409 -30.02632 -28.35738 -27.73913 -26.84040 -23.37068 -23.04484 -21.53887 -20.57091 -18.70137 -17.25175 -16.87826 -16.27539 -15.12613 -14.86499 -14.21669 -14.07161 -13.62682 -13.49980 -13.32745 -12.76887 -12.63127 -12.31541 -11.88640 -11.69328 -11.57378 -11.20457 -11.18280 -10.96082 -10.81511 -10.71313 -10.51821 -10.38187 -9.88765 -9.40835 -9.31162 -8.88564 -7.66293 -7.45643 -6.36701 -4.41647 1.50777 2.09978 3.06224 3.12699 3.15009 3.36918 3.52736 4.11527 4.41431 4.61611 4.91121 5.03301 5.29009 5.39382 5.45221 5.49326 5.68319 5.84624 5.91975 5.96104 5.97121 6.07968 6.15463 6.21644 6.24355 6.33135 6.35599 6.56543 6.63409 6.72646 6.96601 7.11817 7.16957 7.22610 7.44207 7.81679 8.19968 8.55933 8.67719 9.18239 10.75438 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.009531 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.220567 B = 2936.930387 C = 3996.004588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 C -0.137 4.137 4 C 0.296 3.704 5 N -0.511 5.511 6 C 0.041 3.959 7 C -0.075 4.075 8 C -0.137 4.137 9 C -0.123 4.123 10 C -0.094 4.094 11 C 0.053 3.947 12 N -0.454 5.454 13 C 0.209 3.791 14 C -0.546 4.546 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.882 5.882 18 Si 0.871 3.129 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.264 1.264 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 8.241 5.664 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 C -0.195 4.195 4 C 0.030 3.970 5 N -0.232 5.232 6 C -0.079 4.079 7 C -0.095 4.095 8 C -0.158 4.158 9 C -0.143 4.143 10 C -0.114 4.114 11 C -0.059 4.059 12 N -0.139 5.139 13 C 0.089 3.911 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.518 5.518 18 Si 0.697 3.303 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.189 1.189 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.787 8.682 5.606 10.704 hybrid contribution 1.277 -1.004 -0.923 1.868 sum 4.064 7.678 4.683 9.869 Atomic orbital electron populations 1.21714 0.92905 1.02797 1.01891 1.19705 0.96999 0.95139 0.91916 1.21777 1.00789 0.94580 1.02379 1.23361 0.91968 0.86756 0.94892 1.70286 1.26010 1.28579 0.98306 1.19091 1.00220 0.94577 0.94030 1.19828 0.99982 0.98917 0.90741 1.20461 1.00082 0.95983 0.99232 1.20718 1.01366 0.99655 0.92520 1.20043 1.00125 0.96908 0.94372 1.18912 1.02973 0.99455 0.84583 1.45610 1.39664 1.22663 1.05927 1.20064 0.96236 0.93314 0.81494 1.21138 1.06793 1.16398 1.14097 0.90098 1.24816 0.96626 0.94359 0.96513 1.69871 1.35353 1.20034 1.26550 0.86929 0.83751 0.79352 0.80278 1.19615 1.20348 1.18872 0.91871 0.92094 0.92003 0.88753 0.91953 0.91548 0.93002 0.86285 0.86267 0.86078 0.86114 0.93490 0.94256 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.17 37.16 0.34 -1.80 16 2 C -0.02 -0.30 3.24 -91.77 -0.30 -0.60 16 3 C -0.14 -1.92 9.17 37.16 0.34 -1.58 16 4 C 0.30 6.12 6.37 -154.83 -0.99 5.13 16 5 N -0.51 -10.74 11.26 -8.24 -0.09 -10.84 16 6 C 0.04 0.85 7.23 -84.70 -0.61 0.24 16 7 C -0.07 -1.29 10.05 -39.61 -0.40 -1.69 16 8 C -0.14 -2.07 9.96 -39.97 -0.40 -2.47 16 9 C -0.12 -1.94 10.03 -39.52 -0.40 -2.34 16 10 C -0.09 -1.79 10.05 -39.50 -0.40 -2.19 16 11 C 0.05 1.13 6.88 -83.98 -0.58 0.56 16 12 N -0.45 -10.13 2.79 -112.43 -0.31 -10.44 16 13 C 0.21 4.80 4.60 -5.19 -0.02 4.78 16 14 C -0.55 -14.69 9.94 -34.44 -0.34 -15.03 16 15 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 18 Si 0.87 19.52 27.47 -169.99 -4.67 14.85 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.68 6.66 -51.93 -0.35 1.34 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.05 1.03 6.06 -51.93 -0.31 0.71 16 34 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -30.08 296.13 -8.56 -38.63 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.87 Total: 2.92 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.84 Total: -14.90 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.37 Total: -45.96 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.08 -8.56 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006348005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.036 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds