Wall clock time and date at job start Mon Mar 30 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 C 1.50700 * 109.47318 * 120.00005 * 2 1 3 5 5 N 1.30106 * 124.94959 * 300.02415 * 4 2 1 6 6 C 1.35787 * 109.64359 * 179.97438 * 5 4 2 7 7 C 1.39734 * 133.60143 * 179.97438 * 6 5 4 8 8 C 1.36605 * 119.88806 * 180.02562 * 7 6 5 9 9 C 1.38776 * 120.66622 * 359.97438 * 8 7 6 10 10 C 1.37851 * 120.45485 * 0.03810 * 9 8 7 11 11 C 1.38832 * 119.68776 * 359.97438 * 10 9 8 12 12 N 1.36036 * 124.94846 * 119.99953 * 4 2 1 13 13 C 1.46503 * 126.35074 * 0.05961 * 12 4 2 14 14 C 1.50703 * 109.46743 * 269.98144 * 13 12 4 15 15 H 1.08003 * 120.00272 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99820 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99835 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47274 * 90.00432 * 18 16 14 20 20 H 1.48509 * 109.46842 * 210.00158 * 18 16 14 21 21 H 1.48495 * 109.47394 * 329.99833 * 18 16 14 22 22 H 1.09001 * 109.47060 * 300.00092 * 1 2 3 23 23 H 1.09006 * 109.47015 * 59.99745 * 1 2 3 24 24 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47252 * 240.00664 * 2 1 3 26 26 H 1.09006 * 109.47357 * 300.00045 * 3 2 1 27 27 H 1.09001 * 109.47203 * 59.99995 * 3 2 1 28 28 H 1.09001 * 109.47024 * 180.02562 * 3 2 1 29 29 H 1.08009 * 120.05649 * 0.29744 * 7 6 5 30 30 H 1.08001 * 119.66343 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.77372 * 180.02562 * 9 8 7 32 32 H 1.08000 * 120.15788 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.46904 * 29.97890 * 13 12 4 34 34 H 1.08994 * 109.47324 * 149.98344 * 13 12 4 35 35 H 0.96995 * 119.99446 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7777 -0.3511 2.4547 6 6 2.3830 -1.2077 3.3171 7 6 2.4416 -1.2907 4.7107 8 6 3.1523 -2.2956 5.3035 9 6 3.8192 -3.2394 4.5351 10 6 3.7755 -3.1771 3.1587 11 6 3.0585 -2.1627 2.5387 12 7 2.8177 -1.8211 1.2229 13 6 3.3163 -2.5241 0.0382 14 6 2.3273 -3.5857 -0.3691 15 1 1.4185 -3.7234 0.1980 16 6 2.5826 -4.3814 -1.4659 17 7 1.7193 -5.3075 -1.8216 18 14 4.1541 -4.1428 -2.4472 19 1 5.2248 -5.0042 -1.8843 20 1 3.9137 -4.5147 -3.8647 21 1 4.5730 -2.7201 -2.3729 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.9223 -0.5642 5.3183 30 1 3.1955 -2.3561 6.3809 31 1 4.3764 -4.0280 5.0188 32 1 4.2966 -3.9138 2.5654 33 1 3.4440 -1.8139 -0.7787 34 1 4.2747 -2.9894 0.2683 35 1 1.8992 -5.8675 -2.5930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006348005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:04 Heat of formation + Delta-G solvation = 37.372394 kcal Electronic energy + Delta-G solvation = -17472.950973 eV Core-core repulsion = 14856.203172 eV Total energy + Delta-G solvation = -2616.747801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04809 -38.50597 -36.12928 -35.69966 -34.27054 -31.53043 -29.77357 -29.53448 -28.04943 -24.93497 -24.73623 -22.97994 -22.02963 -20.20277 -19.30441 -18.30481 -17.89872 -16.57645 -16.42681 -15.96289 -15.41272 -15.05481 -14.95438 -14.80122 -14.46538 -14.02861 -14.02211 -13.44058 -13.04925 -12.86819 -12.70735 -12.59282 -12.45313 -12.28632 -12.19299 -11.93005 -11.87689 -11.79692 -11.09806 -10.96914 -10.84243 -9.13832 -8.92898 -8.45433 -6.57725 0.09425 0.69539 1.30749 1.31459 1.41756 1.83034 1.99077 2.21105 2.86362 2.99860 3.21500 3.57536 3.98871 4.10592 4.17652 4.19955 4.23863 4.32119 4.52947 4.58428 4.60898 4.75683 4.81077 4.91791 4.93792 4.95613 5.07340 5.16025 5.30818 5.34001 5.35314 5.62460 5.69061 5.74062 5.93521 6.08739 6.37185 6.47357 7.00635 7.07626 8.70959 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.009531 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.220567 B = 2936.930387 C = 3996.004588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.022 4.022 3 C -0.126 4.126 4 C 0.281 3.719 5 N -0.522 5.522 6 C 0.011 3.989 7 C -0.083 4.083 8 C -0.122 4.122 9 C -0.105 4.105 10 C -0.125 4.125 11 C 0.017 3.983 12 N -0.474 5.474 13 C 0.221 3.779 14 C -0.551 4.551 15 H 0.022 0.978 16 C 0.026 3.974 17 N -0.933 5.933 18 Si 0.946 3.054 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.238 1.238 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.050 9.421 6.493 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 C -0.184 4.184 4 C 0.015 3.985 5 N -0.243 5.243 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.142 4.142 9 C -0.125 4.125 10 C -0.146 4.146 11 C -0.093 4.093 12 N -0.160 5.160 13 C 0.100 3.900 14 C -0.589 4.589 15 H 0.041 0.959 16 C -0.174 4.174 17 N -0.571 5.571 18 Si 0.767 3.233 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.161 1.161 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.046 0.954 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.580 9.884 6.477 12.674 hybrid contribution 0.626 -1.434 -0.990 1.852 sum 5.206 8.449 5.487 11.340 Atomic orbital electron populations 1.21669 0.92268 1.01025 1.03581 1.19917 0.97528 0.96760 0.90057 1.21718 1.00647 0.92272 1.03758 1.24060 0.91747 0.86664 0.95984 1.70253 1.26342 1.29096 0.98621 1.19651 1.00880 0.94785 0.95537 1.20261 1.00377 1.00143 0.89475 1.21000 0.97682 0.94088 1.01475 1.21235 0.99992 1.00065 0.91179 1.20308 1.01258 0.96942 0.96063 1.19436 1.04418 1.00852 0.84582 1.45636 1.40895 1.23418 1.06020 1.19815 0.95146 0.92526 0.82554 1.21160 1.05755 1.18107 1.13850 0.95926 1.25796 1.00641 0.93507 0.97486 1.70029 1.38044 1.21433 1.27563 0.85746 0.78515 0.80840 0.78202 1.18649 1.19823 1.16144 0.91709 0.88799 0.95405 0.89797 0.88839 0.91801 0.93124 0.84140 0.81597 0.82243 0.86631 0.91939 0.93447 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.17 71.98 0.66 -3.44 16 2 C -0.02 -0.77 3.24 -11.54 -0.04 -0.81 16 3 C -0.13 -3.35 9.17 71.98 0.66 -2.69 16 4 C 0.28 11.93 6.37 137.92 0.88 12.81 16 5 N -0.52 -22.37 11.26 -179.97 -2.03 -24.40 16 6 C 0.01 0.45 7.23 39.45 0.29 0.73 16 7 C -0.08 -2.72 10.05 22.25 0.22 -2.49 16 8 C -0.12 -3.28 9.96 22.02 0.22 -3.06 16 9 C -0.11 -3.06 10.03 22.31 0.22 -2.83 16 10 C -0.12 -4.76 10.05 22.32 0.22 -4.53 16 11 C 0.02 0.77 6.88 38.86 0.27 1.03 16 12 N -0.47 -21.83 2.79 -509.63 -1.42 -23.25 16 13 C 0.22 10.32 4.60 85.63 0.39 10.71 16 14 C -0.55 -31.01 9.94 25.60 0.25 -30.76 16 15 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 16 C 0.03 1.44 5.47 84.65 0.46 1.91 16 17 N -0.93 -55.84 13.96 21.45 0.30 -55.55 16 18 Si 0.95 40.01 27.47 68.60 1.88 41.90 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 3.03 6.66 -2.39 -0.02 3.01 16 26 H 0.09 1.88 8.14 -2.38 -0.02 1.87 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.06 2.70 6.06 -2.39 -0.01 2.69 16 34 H 0.05 2.12 7.57 -2.39 -0.02 2.10 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -69.77 296.13 4.46 -65.31 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.01 Total: 19.41 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.72 Total: -23.42 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.15 Total: -103.19 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.88 Total: 41.90 kcal Total: -69.77 4.46 -65.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006348005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.682 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds